data_9GI
#
_chem_comp.id 9GI
_chem_comp.name
'benzyl [(2S,3R)-3-tert-butoxy-1-{[(2S)-3-cyclohexyl-1-oxo-1-(2-{[(3S)-2-oxopyrrolidin-3-yl]methyl}-2-propanoylhydrazinyl)propan-2-yl]amino}-1-oxobutan-2-yl]carbamate (non-preferred name)'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C33 H51 N5 O7'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 629.787
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9GI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7SH7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9GI N N1 N 0 1 N N N N N N -9.719 -15.247 -18.165 -0.384 -0.275 -0.752 N 9GI 1
9GI C C1 C 0 1 N N S N N N -9.827 -17.651 -18.176 2.010 -0.881 -0.895 C 9GI 2
9GI O O1 O 0 1 N N N N N N -10.478 -16.286 -16.325 1.018 0.374 0.840 O 9GI 3
9GI C1 C2 C 0 1 N N N N N N -10.042 -16.337 -17.474 0.847 -0.216 -0.206 C1 9GI 4
9GI C10 C3 C 0 1 N N N N N N -15.043 -15.798 -14.833 -6.614 1.852 0.187 C10 9GI 5
9GI C11 C4 C 0 1 N N N N N N -9.140 -12.888 -18.356 -1.629 1.789 -0.339 C11 9GI 6
9GI C12 C5 C 0 1 N N N N N N -7.759 -12.422 -17.857 -0.403 2.506 0.230 C12 9GI 7
9GI C13 C6 C 0 1 N N R N N N -11.147 -18.370 -18.472 1.918 -2.396 -0.702 C13 9GI 8
9GI C14 C7 C 0 1 N N N N N N -12.315 -17.416 -18.727 3.109 -3.071 -1.386 C14 9GI 9
9GI C15 C8 C 0 1 N N N N N N -7.767 -18.867 -17.692 4.352 -0.242 -1.101 C15 9GI 10
9GI C16 C9 C 0 1 N N N N N N -5.709 -20.072 -16.976 6.660 0.253 -1.456 C16 9GI 11
9GI C17 C10 C 0 1 N N N N N N -11.413 -20.591 -19.412 1.029 -3.739 1.074 C17 9GI 12
9GI C18 C11 C 0 1 N N N N N N -10.692 -21.461 -20.440 -0.407 -3.286 0.804 C18 9GI 13
9GI C19 C12 C 0 1 N N N N N N -12.923 -20.673 -19.662 1.197 -4.042 2.564 C19 9GI 14
9GI C2 C13 C 0 1 N N S N N N -9.833 -13.961 -17.516 -1.530 0.292 -0.038 C2 9GI 15
9GI C20 C14 C 0 1 N N N N N N -11.076 -21.094 -18.006 1.328 -4.999 0.260 C20 9GI 16
9GI C21 C15 C 0 1 N N N N N N -6.722 -12.623 -18.950 -0.412 2.398 1.756 C21 9GI 17
9GI C22 C16 C 0 1 N N N N N N -5.426 -11.869 -18.659 0.814 3.115 2.325 C22 9GI 18
9GI C23 C17 C 0 1 N N N N N N -5.065 -12.003 -17.182 0.778 4.589 1.917 C23 9GI 19
9GI C24 C18 C 0 1 N N N N N N -5.727 -13.232 -16.559 0.787 4.696 0.391 C24 9GI 20
9GI C25 C19 C 0 1 N N N N N N -7.256 -13.134 -16.593 -0.439 3.980 -0.178 C25 9GI 21
9GI C26 C20 C 0 1 Y N N N N N -5.675 -21.203 -17.968 7.884 0.648 -0.671 C26 9GI 22
9GI C27 C21 C 0 1 Y N N N N N -5.345 -20.941 -19.298 8.170 1.985 -0.463 C27 9GI 23
9GI C28 C22 C 0 1 Y N N N N N -5.308 -21.980 -20.218 9.290 2.347 0.261 C28 9GI 24
9GI C29 C23 C 0 1 Y N N N N N -5.611 -23.277 -19.809 10.123 1.373 0.779 C29 9GI 25
9GI C3 C24 C 0 1 N N N N N N -11.300 -13.679 -17.308 -2.793 -0.396 -0.488 C3 9GI 26
9GI C30 C25 C 0 1 Y N N N N N -5.934 -23.531 -18.485 9.837 0.037 0.572 C30 9GI 27
9GI C31 C26 C 0 1 Y N N N N N -5.975 -22.498 -17.553 8.717 -0.326 -0.154 C31 9GI 28
9GI C32 C27 C 0 1 N N N N N N -12.644 -10.702 -17.148 -4.634 -2.504 1.200 C32 9GI 29
9GI C33 C28 C 0 1 N N N N N N -11.634 -9.970 -16.284 -5.211 -3.869 1.578 C33 9GI 30
9GI C5 C29 C 0 1 N N N N N N -13.480 -11.650 -16.311 -5.476 -1.887 0.112 C5 9GI 31
9GI C6 C30 C 0 1 N N N N N N -13.850 -13.675 -15.120 -6.034 -0.026 -1.358 C6 9GI 32
9GI C7 C31 C 0 1 N N S N N N -14.090 -15.045 -15.723 -7.164 0.700 -0.624 C7 9GI 33
9GI C8 C32 C 0 1 N N N N N N -14.791 -15.074 -17.081 -8.123 1.371 -1.634 C8 9GI 34
9GI C9 C33 C 0 1 N N N N N N -15.770 -16.242 -16.977 -8.496 2.675 -0.895 C9 9GI 35
9GI N1 N2 N 0 1 N N N N N N -11.687 -13.159 -16.139 -3.981 -0.035 0.037 N1 9GI 36
9GI N2 N3 N 0 1 N N N N N N -15.882 -16.528 -15.551 -7.378 2.944 0.016 N2 9GI 37
9GI N3 N4 N 0 1 N N N N N N -9.005 -18.513 -17.356 3.264 -0.391 -0.319 N3 9GI 38
9GI N4 N5 N 0 1 N N N N N N -12.970 -12.826 -15.918 -5.155 -0.675 -0.382 N4 9GI 39
9GI O1 O2 O 0 1 N N N N N N -12.098 -13.956 -18.182 -2.741 -1.273 -1.324 O1 9GI 40
9GI O2 O3 O 0 1 N N N N N N -14.613 -11.330 -15.940 -6.442 -2.481 -0.317 O2 9GI 41
9GI O3 O4 O 0 1 N N N N N N -15.016 -15.718 -13.611 -5.629 1.797 0.893 O3 9GI 42
9GI O4 O5 O 0 1 N N N N N N -10.945 -19.241 -19.592 1.935 -2.701 0.694 O4 9GI 43
9GI O5 O6 O 0 1 N N N N N N -7.064 -19.704 -16.751 5.531 0.110 -0.554 O5 9GI 44
9GI O6 O7 O 0 1 N N N N N N -7.206 -18.540 -18.732 4.268 -0.424 -2.299 O6 9GI 45
9GI H1 H1 H 0 1 N N N N N N -9.405 -15.316 -19.112 -0.510 -0.690 -1.619 H1 9GI 46
9GI H2 H2 H 0 1 N N N N N N -9.316 -17.460 -19.131 1.983 -0.648 -1.959 H2 9GI 47
9GI H3 H3 H 0 1 N N N N N N -9.800 -12.008 -18.388 -2.532 2.193 0.120 H3 9GI 48
9GI H4 H4 H 0 1 N N N N N N -9.012 -13.288 -19.373 -1.671 1.940 -1.417 H4 9GI 49
9GI H5 H5 H 0 1 N N N N N N -7.823 -11.346 -17.638 0.503 2.042 -0.161 H5 9GI 50
9GI H6 H6 H 0 1 N N N N N N -11.400 -18.977 -17.590 0.990 -2.763 -1.142 H6 9GI 51
9GI H7 H7 H 0 1 N N N N N N -12.450 -16.759 -17.855 4.029 -2.787 -0.876 H7 9GI 52
9GI H8 H8 H 0 1 N N N N N N -12.102 -16.805 -19.617 2.988 -4.153 -1.342 H8 9GI 53
9GI H9 H9 H 0 1 N N N N N N -13.234 -17.998 -18.893 3.157 -2.753 -2.428 H9 9GI 54
9GI H10 H10 H 0 1 N N N N N N -5.251 -20.396 -16.030 6.438 1.023 -2.196 H10 9GI 55
9GI H11 H11 H 0 1 N N N N N N -5.153 -19.211 -17.377 6.843 -0.695 -1.962 H11 9GI 56
9GI H12 H12 H 0 1 N N N N N N -9.607 -21.409 -20.269 -1.102 -4.025 1.202 H12 9GI 57
9GI H13 H13 H 0 1 N N N N N N -11.029 -22.503 -20.339 -0.582 -2.325 1.288 H13 9GI 58
9GI H14 H14 H 0 1 N N N N N N -10.921 -21.098 -21.453 -0.560 -3.184 -0.270 H14 9GI 59
9GI H15 H15 H 0 1 N N N N N N -13.451 -20.049 -18.926 2.220 -4.364 2.756 H15 9GI 60
9GI H16 H16 H 0 1 N N N N N N -13.147 -20.312 -20.677 0.984 -3.144 3.144 H16 9GI 61
9GI H17 H17 H 0 1 N N N N N N -13.255 -21.717 -19.563 0.506 -4.833 2.854 H17 9GI 62
9GI H18 H18 H 0 1 N N N N N N -9.341 -14.002 -16.533 -1.400 0.145 1.035 H18 9GI 63
9GI H19 H19 H 0 1 N N N N N N -11.592 -20.472 -17.260 1.115 -4.812 -0.792 H19 9GI 64
9GI H20 H20 H 0 1 N N N N N N -11.404 -22.139 -17.902 2.378 -5.267 0.376 H20 9GI 65
9GI H21 H21 H 0 1 N N N N N N -9.989 -21.033 -17.846 0.703 -5.818 0.617 H21 9GI 66
9GI H22 H22 H 0 1 N N N N N N -7.136 -12.261 -19.903 -1.318 2.862 2.148 H22 9GI 67
9GI H23 H23 H 0 1 N N N N N N -6.497 -13.697 -19.032 -0.386 1.348 2.047 H23 9GI 68
9GI H24 H24 H 0 1 N N N N N N -4.615 -12.289 -19.272 0.808 3.039 3.412 H24 9GI 69
9GI H25 H25 H 0 1 N N N N N N -5.560 -10.806 -18.906 1.720 2.652 1.934 H25 9GI 70
9GI H26 H26 H 0 1 N N N N N N -3.973 -12.097 -17.087 -0.128 5.053 2.309 H26 9GI 71
9GI H27 H27 H 0 1 N N N N N N -5.404 -11.103 -16.647 1.652 5.100 2.323 H27 9GI 72
9GI H28 H28 H 0 1 N N N N N N -5.415 -14.126 -17.118 0.761 5.747 0.100 H28 9GI 73
9GI H29 H29 H 0 1 N N N N N N -5.399 -13.321 -15.513 1.693 4.233 -0.000 H29 9GI 74
9GI H30 H30 H 0 1 N N N N N N -7.596 -12.572 -15.710 -0.433 4.056 -1.265 H30 9GI 75
9GI H31 H31 H 0 1 N N N N N N -7.678 -14.150 -16.566 -1.345 4.443 0.214 H31 9GI 76
9GI H32 H32 H 0 1 N N N N N N -5.119 -19.932 -19.611 7.519 2.746 -0.868 H32 9GI 77
9GI H33 H33 H 0 1 N N N N N N -5.045 -21.784 -21.247 9.514 3.391 0.423 H33 9GI 78
9GI H34 H34 H 0 1 N N N N N N -5.594 -24.086 -20.525 10.999 1.656 1.344 H34 9GI 79
9GI H35 H35 H 0 1 N N N N N N -6.156 -24.541 -18.173 10.488 -0.724 0.976 H35 9GI 80
9GI H36 H36 H 0 1 N N N N N N -6.235 -22.698 -16.524 8.491 -1.370 -0.312 H36 9GI 81
9GI H37 H37 H 0 1 N N N N N N -12.110 -11.277 -17.919 -4.637 -1.853 2.074 H37 9GI 82
9GI H38 H38 H 0 1 N N N N N N -13.306 -9.968 -17.631 -3.612 -2.628 0.842 H38 9GI 83
9GI H39 H39 H 0 1 N N N N N N -11.040 -9.289 -16.911 -4.602 -4.316 2.364 H39 9GI 84
9GI H40 H40 H 0 1 N N N N N N -12.163 -9.391 -15.513 -6.233 -3.746 1.936 H40 9GI 85
9GI H41 H41 H 0 1 N Y N N N N -10.967 -10.700 -15.801 -5.209 -4.520 0.703 H41 9GI 86
9GI H42 H42 H 0 1 N N N N N N -13.397 -13.808 -14.127 -6.458 -0.779 -2.023 H42 9GI 87
9GI H43 H43 H 0 1 N N N N N N -14.820 -13.167 -15.015 -5.460 0.693 -1.942 H43 9GI 88
9GI H44 H44 H 0 1 N N N N N N -13.137 -15.590 -15.792 -7.707 0.007 0.018 H44 9GI 89
9GI H45 H45 H 0 1 N N N N N N -14.066 -15.245 -17.890 -7.608 1.587 -2.571 H45 9GI 90
9GI H46 H46 H 0 1 N N N N N N -15.328 -14.131 -17.262 -9.005 0.755 -1.808 H46 9GI 91
9GI H47 H47 H 0 1 N N N N N N -16.750 -15.961 -17.391 -8.611 3.493 -1.607 H47 9GI 92
9GI H48 H48 H 0 1 N N N N N N -15.382 -17.119 -17.516 -9.416 2.537 -0.328 H48 9GI 93
9GI H49 H49 H 0 1 N N N N N N -11.010 -13.015 -15.417 -4.023 0.666 0.705 H49 9GI 94
9GI H50 H50 H 0 1 N N N N N N -16.517 -17.196 -15.162 -7.209 3.802 0.437 H50 9GI 95
9GI H51 H51 H 0 1 N N N N N N -9.384 -18.859 -16.498 3.312 -0.174 0.626 H51 9GI 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9GI C18 C17 SING N N 1
9GI C28 C29 DOUB Y N 2
9GI C28 C27 SING Y N 3
9GI C29 C30 SING Y N 4
9GI C19 C17 SING N N 5
9GI O4 C17 SING N N 6
9GI O4 C13 SING N N 7
9GI C17 C20 SING N N 8
9GI C27 C26 DOUB Y N 9
9GI C21 C22 SING N N 10
9GI C21 C12 SING N N 11
9GI O6 C15 DOUB N N 12
9GI C14 C13 SING N N 13
9GI C22 C23 SING N N 14
9GI C30 C31 DOUB Y N 15
9GI C13 C SING N N 16
9GI C11 C12 SING N N 17
9GI C11 C2 SING N N 18
9GI O1 C3 DOUB N N 19
9GI C C1 SING N N 20
9GI C N3 SING N N 21
9GI N C2 SING N N 22
9GI N C1 SING N N 23
9GI C26 C31 SING Y N 24
9GI C26 C16 SING N N 25
9GI C12 C25 SING N N 26
9GI C15 N3 SING N N 27
9GI C15 O5 SING N N 28
9GI C2 C3 SING N N 29
9GI C1 O DOUB N N 30
9GI C3 N1 SING N N 31
9GI C23 C24 SING N N 32
9GI C32 C5 SING N N 33
9GI C32 C33 SING N N 34
9GI C8 C9 SING N N 35
9GI C8 C7 SING N N 36
9GI C9 N2 SING N N 37
9GI C16 O5 SING N N 38
9GI C25 C24 SING N N 39
9GI C5 O2 DOUB N N 40
9GI C5 N4 SING N N 41
9GI N1 N4 SING N N 42
9GI N4 C6 SING N N 43
9GI C7 C6 SING N N 44
9GI C7 C10 SING N N 45
9GI N2 C10 SING N N 46
9GI C10 O3 DOUB N N 47
9GI N H1 SING N N 48
9GI C H2 SING N N 49
9GI C11 H3 SING N N 50
9GI C11 H4 SING N N 51
9GI C12 H5 SING N N 52
9GI C13 H6 SING N N 53
9GI C14 H7 SING N N 54
9GI C14 H8 SING N N 55
9GI C14 H9 SING N N 56
9GI C16 H10 SING N N 57
9GI C16 H11 SING N N 58
9GI C18 H12 SING N N 59
9GI C18 H13 SING N N 60
9GI C18 H14 SING N N 61
9GI C19 H15 SING N N 62
9GI C19 H16 SING N N 63
9GI C19 H17 SING N N 64
9GI C2 H18 SING N N 65
9GI C20 H19 SING N N 66
9GI C20 H20 SING N N 67
9GI C20 H21 SING N N 68
9GI C21 H22 SING N N 69
9GI C21 H23 SING N N 70
9GI C22 H24 SING N N 71
9GI C22 H25 SING N N 72
9GI C23 H26 SING N N 73
9GI C23 H27 SING N N 74
9GI C24 H28 SING N N 75
9GI C24 H29 SING N N 76
9GI C25 H30 SING N N 77
9GI C25 H31 SING N N 78
9GI C27 H32 SING N N 79
9GI C28 H33 SING N N 80
9GI C29 H34 SING N N 81
9GI C30 H35 SING N N 82
9GI C31 H36 SING N N 83
9GI C32 H37 SING N N 84
9GI C32 H38 SING N N 85
9GI C33 H39 SING N N 86
9GI C33 H40 SING N N 87
9GI C33 H41 SING N N 88
9GI C6 H42 SING N N 89
9GI C6 H43 SING N N 90
9GI C7 H44 SING N N 91
9GI C8 H45 SING N N 92
9GI C8 H46 SING N N 93
9GI C9 H47 SING N N 94
9GI C9 H48 SING N N 95
9GI N1 H49 SING N N 96
9GI N2 H50 SING N N 97
9GI N3 H51 SING N N 98
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9GI SMILES ACDLabs 12.01 'CC(C)(C)OC(C)C(NC(=O)OCc1ccccc1)C(=O)NC(CC1CCCCC1)C(=O)NN(CC1CCNC1=O)C(=O)CC'
9GI InChI InChI 1.03 'InChI=1S/C33H51N5O7/c1-6-27(39)38(20-25-17-18-34-29(25)40)37-30(41)26(19-23-13-9-7-10-14-23)35-31(42)28(22(2)45-33(3,4)5)36-32(43)44-21-24-15-11-8-12-16-24/h8,11-12,15-16,22-23,25-26,28H,6-7,9-10,13-14,17-21H2,1-5H3,(H,34,40)(H,35,42)(H,36,43)(H,37,41)/t22-,25+,26+,28+/m1/s1'
9GI InChIKey InChI 1.03 BVMIPNYBILKDCO-NGXSIQFZSA-N
9GI SMILES_CANONICAL CACTVS 3.385 'CCC(=O)N(C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)[C@@H](NC(=O)OCc3ccccc3)[C@@H](C)OC(C)(C)C'
9GI SMILES CACTVS 3.385 'CCC(=O)N(C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)[CH](NC(=O)OCc3ccccc3)[CH](C)OC(C)(C)C'
9GI SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CCC(=O)N(C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)[C@H]([C@@H](C)OC(C)(C)C)NC(=O)OCc3ccccc3'
9GI SMILES 'OpenEye OEToolkits' 2.0.7 'CCC(=O)N(CC1CCNC1=O)NC(=O)C(CC2CCCCC2)NC(=O)C(C(C)OC(C)(C)C)NC(=O)OCc3ccccc3'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9GI 'SYSTEMATIC NAME' ACDLabs 12.01 'benzyl [(2S,3R)-3-tert-butoxy-1-{[(2S)-3-cyclohexyl-1-oxo-1-(2-{[(3S)-2-oxopyrrolidin-3-yl]methyl}-2-propanoylhydrazinyl)propan-2-yl]amino}-1-oxobutan-2-yl]carbamate (non-preferred name)'
9GI 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[2-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-2-propanoyl-hydrazinyl]propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9GI 'Create component' 2021-10-13 RCSB
9GI 'Initial release' 2023-04-12 RCSB
9GI 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 9GI
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C33
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9GI N N 10.794 -1.500 1
9GI C C 9.495 0.750 2
9GI O O 8.196 -1.500 3
9GI C1 C 9.495 -0.750 4
9GI C10 C 18.660 -3.140 5
9GI C11 C 9.495 -3.750 6
9GI C12 C 9.495 -5.250 7
9GI C13 C 10.794 1.500 8
9GI C14 C 12.093 0.750 9
9GI C15 C 8.196 3.000 10
9GI C16 C 6.897 5.250 11
9GI C17 C 12.093 3.750 12
9GI C18 C 13.392 4.500 13
9GI C19 C 11.343 5.049 14
9GI C2 C 10.794 -3.000 15
9GI C20 C 12.843 2.451 16
9GI C21 C 8.196 -6.000 17
9GI C22 C 8.196 -7.500 18
9GI C23 C 9.495 -8.250 19
9GI C24 C 10.794 -7.500 20
9GI C25 C 10.794 -6.000 21
9GI C26 C 5.598 6.000 22
9GI C27 C 5.598 7.500 23
9GI C28 C 4.299 8.250 24
9GI C29 C 3.000 7.500 25
9GI C3 C 12.093 -3.750 26
9GI C30 C 3.000 6.000 27
9GI C31 C 4.299 5.250 28
9GI C32 C 15.990 -6.000 29
9GI C33 C 15.990 -7.500 30
9GI C5 C 14.691 -5.250 31
9GI C6 C 15.990 -3.000 32
9GI C7 C 17.290 -3.750 33
9GI C8 C 17.446 -5.242 34
9GI C9 C 18.913 -5.554 35
9GI N1 N 13.392 -3.000 36
9GI N2 N 19.663 -4.255 37
9GI N3 N 8.196 1.500 38
9GI N4 N 14.691 -3.750 39
9GI O1 O 12.093 -5.250 40
9GI O2 O 13.392 -6.000 41
9GI O3 O 18.972 -1.673 42
9GI O4 O 10.794 3.000 43
9GI O5 O 6.897 3.750 44
9GI O6 O 9.495 3.750 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9GI C18 C17 SINGLE NONE 1
9GI C28 C29 SINGLE NONE 2
9GI C28 C27 DOUBLE NONE 3
9GI C29 C30 DOUBLE NONE 4
9GI C19 C17 SINGLE NONE 5
9GI O4 C17 SINGLE NONE 6
9GI O4 C13 SINGLE NONE 7
9GI C17 C20 SINGLE NONE 8
9GI C27 C26 SINGLE NONE 9
9GI C21 C22 SINGLE NONE 10
9GI C21 C12 SINGLE NONE 11
9GI O6 C15 DOUBLE NONE 12
9GI C13 C14 SINGLE BEGINDASH 13
9GI C22 C23 SINGLE NONE 14
9GI C30 C31 SINGLE NONE 15
9GI C13 C SINGLE NONE 16
9GI C11 C12 SINGLE NONE 17
9GI C2 C11 SINGLE BEGINDASH 18
9GI O1 C3 DOUBLE NONE 19
9GI C C1 SINGLE NONE 20
9GI C N3 SINGLE BEGINWEDGE 21
9GI N C2 SINGLE NONE 22
9GI N C1 SINGLE NONE 23
9GI C26 C31 DOUBLE NONE 24
9GI C26 C16 SINGLE NONE 25
9GI C12 C25 SINGLE NONE 26
9GI C15 N3 SINGLE NONE 27
9GI C15 O5 SINGLE NONE 28
9GI C2 C3 SINGLE NONE 29
9GI C1 O DOUBLE NONE 30
9GI C3 N1 SINGLE NONE 31
9GI C23 C24 SINGLE NONE 32
9GI C32 C5 SINGLE NONE 33
9GI C32 C33 SINGLE NONE 34
9GI C8 C9 SINGLE NONE 35
9GI C8 C7 SINGLE NONE 36
9GI C9 N2 SINGLE NONE 37
9GI C16 O5 SINGLE NONE 38
9GI C25 C24 SINGLE NONE 39
9GI C5 O2 DOUBLE NONE 40
9GI C5 N4 SINGLE NONE 41
9GI N1 N4 SINGLE NONE 42
9GI N4 C6 SINGLE NONE 43
9GI C7 C6 SINGLE BEGINWEDGE 44
9GI C7 C10 SINGLE NONE 45
9GI N2 C10 SINGLE NONE 46
9GI C10 O3 DOUBLE NONE 47
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9GI MurckoScaffold S1 scaffold 'O=C(CNC(=O)OCc1ccccc1)N[C@@H](CC1CCCCC1)C(=O)NNC[C@@H]1CCNC1=O' InChI=1S/C24H35N5O5/c30-21(15-26-24(33)34-16-18-9-5-2-6-10-18)28-20(13-17-7-3-1-4-8-17)23(32)29-27-14-19-11-12-25-22(19)31/h2,5-6,9-10,17,19-20,27H,1,3-4,7-8,11-16H2,(H,25,31)(H,26,33)(H,28,30)(H,29,32)/t19-,20-/m0/s1 OLLPYNYCWQBQOR-PMACEKPBSA-N
9GI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9GI cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
9GI peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
9GI phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9GI Z2856434901 F5 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9GI N S1 1
9GI C S1 1
9GI O S1 1
9GI C1 S1 1
9GI C10 S1 1
9GI C11 S1 1
9GI C12 S1 1
9GI C15 S1 1
9GI C16 S1 1
9GI C2 S1 1
9GI C21 S1 1
9GI C22 S1 1
9GI C23 S1 1
9GI C24 S1 1
9GI C25 S1 1
9GI C26 S1 1
9GI C27 S1 1
9GI C28 S1 1
9GI C29 S1 1
9GI C3 S1 1
9GI C30 S1 1
9GI C31 S1 1
9GI C6 S1 1
9GI C7 S1 1
9GI C8 S1 1
9GI C9 S1 1
9GI N1 S1 1
9GI N2 S1 1
9GI N3 S1 1
9GI N4 S1 1
9GI O1 S1 1
9GI O3 S1 1
9GI O5 S1 1
9GI O6 S1 1
9GI N F1 1
9GI C1 F1 1
9GI O F1 1
9GI C F1 1
9GI N1 F1 2
9GI C3 F1 2
9GI O1 F1 2
9GI C2 F1 2
9GI N2 F1 3
9GI C10 F1 3
9GI O3 F1 3
9GI C7 F1 3
9GI N4 F1 4
9GI C5 F1 4
9GI O2 F1 4
9GI C32 F1 4
9GI C12 F2 1
9GI C21 F2 1
9GI C22 F2 1
9GI C23 F2 1
9GI C24 F2 1
9GI C25 F2 1
9GI O F3 1
9GI C1 F3 1
9GI C F3 1
9GI N3 F3 1
9GI O1 F3 2
9GI C3 F3 2
9GI C2 F3 2
9GI N F3 2
9GI C26 F4 1
9GI C27 F4 1
9GI C28 F4 1
9GI C29 F4 1
9GI C30 F4 1
9GI C31 F4 1
9GI C1 F5 1
9GI N F5 1
9GI C2 F5 1
9GI C11 F5 1
9GI C12 F5 1
9GI C21 F5 1
9GI C22 F5 1
9GI C23 F5 1
9GI C24 F5 1
9GI C25 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9GI
_pdbe_chem_comp_rdkit_properties.exactmw 629.379
_pdbe_chem_comp_rdkit_properties.amw 629.799
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 96
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 338.123
_pdbe_chem_comp_rdkit_properties.tpsa 155.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.291
_pdbe_chem_comp_rdkit_properties.CrippenMR 167.971
_pdbe_chem_comp_rdkit_properties.chi0v 21.594
_pdbe_chem_comp_rdkit_properties.chi1v 11.050
_pdbe_chem_comp_rdkit_properties.chi2v 4.036
_pdbe_chem_comp_rdkit_properties.chi3v 4.036
_pdbe_chem_comp_rdkit_properties.chi4v 2.360
_pdbe_chem_comp_rdkit_properties.chi0n 72.594
_pdbe_chem_comp_rdkit_properties.chi1n 36.338
_pdbe_chem_comp_rdkit_properties.chi2n 4.036
_pdbe_chem_comp_rdkit_properties.chi3n 4.036
_pdbe_chem_comp_rdkit_properties.chi4n 2.360
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.670
_pdbe_chem_comp_rdkit_properties.kappa1 7.555
_pdbe_chem_comp_rdkit_properties.kappa2 17.140
_pdbe_chem_comp_rdkit_properties.kappa3 11.979
_pdbe_chem_comp_rdkit_properties.Phi 2.878
#
_pdbe_chem_comp_external_mappings.comp_id 9GI
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 167713196
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9GI N -0.017 0.304 -0.025 ETKDGv3 1
9GI C -1.033 -0.471 -2.246 ETKDGv3 2
9GI O 0.325 1.498 -1.998 ETKDGv3 3
9GI C1 -0.244 0.529 -1.427 ETKDGv3 4
9GI C10 4.885 -3.456 -0.503 ETKDGv3 5
9GI C11 0.497 0.997 2.288 ETKDGv3 6
9GI C12 1.307 1.906 3.246 ETKDGv3 7
9GI C13 -1.639 0.113 -3.558 ETKDGv3 8
9GI C14 -2.073 -1.047 -4.469 ETKDGv3 9
9GI C15 -3.055 -0.461 -0.647 ETKDGv3 10
9GI C16 -5.040 -0.620 0.821 ETKDGv3 11
9GI C17 -2.873 2.167 -3.926 ETKDGv3 12
9GI C18 -4.232 2.761 -3.515 ETKDGv3 13
9GI C19 -2.868 2.030 -5.466 ETKDGv3 14
9GI C2 0.791 1.218 0.786 ETKDGv3 15
9GI C20 -1.775 3.151 -3.468 ETKDGv3 16
9GI C21 0.932 3.397 3.083 ETKDGv3 17
9GI C22 1.691 4.277 4.084 ETKDGv3 18
9GI C23 1.450 3.814 5.524 ETKDGv3 19
9GI C24 1.838 2.342 5.694 ETKDGv3 20
9GI C25 1.071 1.457 4.704 ETKDGv3 21
9GI C26 -5.925 -1.697 1.376 ETKDGv3 22
9GI C27 -7.143 -2.108 0.635 ETKDGv3 23
9GI C28 -7.915 -3.098 1.103 ETKDGv3 24
9GI C29 -7.552 -3.790 2.356 ETKDGv3 25
9GI C3 2.247 1.006 0.468 ETKDGv3 26
9GI C30 -6.447 -3.433 3.022 ETKDGv3 27
9GI C31 -5.589 -2.345 2.506 ETKDGv3 28
9GI C32 3.447 0.062 -2.369 ETKDGv3 29
9GI C33 3.897 -0.449 -3.736 ETKDGv3 30
9GI C5 4.490 -0.171 -1.306 ETKDGv3 31
9GI C6 5.030 -1.358 0.861 ETKDGv3 32
9GI C7 4.678 -2.859 0.839 ETKDGv3 33
9GI C8 5.654 -3.677 1.715 ETKDGv3 34
9GI C9 6.596 -4.430 0.756 ETKDGv3 35
9GI N1 2.817 -0.309 0.515 ETKDGv3 36
9GI N2 5.981 -4.341 -0.552 ETKDGv3 37
9GI N3 -2.068 -1.138 -1.440 ETKDGv3 38
9GI N4 4.111 -0.576 0.026 ETKDGv3 39
9GI O1 2.969 1.998 0.178 ETKDGv3 40
9GI O2 5.706 0.022 -1.580 ETKDGv3 41
9GI O3 4.142 -3.240 -1.497 ETKDGv3 42
9GI O4 -2.778 0.910 -3.254 ETKDGv3 43
9GI O5 -4.033 -1.213 0.008 ETKDGv3 44
9GI O6 -3.033 0.795 -0.526 ETKDGv3 45
9GI H1 -0.361 -0.584 0.406 ETKDGv3 46
9GI H2 -0.286 -1.242 -2.541 ETKDGv3 47
9GI H3 0.708 -0.066 2.539 ETKDGv3 48
9GI H4 -0.590 1.159 2.463 ETKDGv3 49
9GI H5 2.391 1.785 3.027 ETKDGv3 50
9GI H6 -0.839 0.665 -4.095 ETKDGv3 51
9GI H7 -1.217 -1.726 -4.669 ETKDGv3 52
9GI H8 -2.432 -0.673 -5.448 ETKDGv3 53
9GI H9 -2.893 -1.628 -3.997 ETKDGv3 54
9GI H10 -5.643 0.089 0.213 ETKDGv3 55
9GI H11 -4.566 -0.047 1.649 ETKDGv3 56
9GI H12 -4.279 2.891 -2.412 ETKDGv3 57
9GI H13 -4.404 3.750 -3.994 ETKDGv3 58
9GI H14 -5.057 2.078 -3.814 ETKDGv3 59
9GI H15 -3.071 3.013 -5.943 ETKDGv3 60
9GI H16 -1.885 1.683 -5.845 ETKDGv3 61
9GI H17 -3.656 1.320 -5.794 ETKDGv3 62
9GI H18 0.499 2.258 0.523 ETKDGv3 63
9GI H19 -1.716 3.171 -2.359 ETKDGv3 64
9GI H20 -0.783 2.882 -3.883 ETKDGv3 65
9GI H21 -2.000 4.180 -3.822 ETKDGv3 66
9GI H22 1.192 3.749 2.063 ETKDGv3 67
9GI H23 -0.163 3.533 3.228 ETKDGv3 68
9GI H24 1.352 5.330 3.977 ETKDGv3 69
9GI H25 2.780 4.244 3.859 ETKDGv3 70
9GI H26 2.057 4.436 6.217 ETKDGv3 71
9GI H27 0.378 3.952 5.788 ETKDGv3 72
9GI H28 1.605 2.019 6.731 ETKDGv3 73
9GI H29 2.932 2.221 5.535 ETKDGv3 74
9GI H30 1.413 0.406 4.832 ETKDGv3 75
9GI H31 -0.015 1.495 4.944 ETKDGv3 76
9GI H32 -7.413 -1.609 -0.288 ETKDGv3 77
9GI H33 -8.804 -3.395 0.562 ETKDGv3 78
9GI H34 -8.179 -4.588 2.732 ETKDGv3 79
9GI H35 -6.176 -3.943 3.938 ETKDGv3 80
9GI H36 -4.690 -2.081 3.049 ETKDGv3 81
9GI H37 3.234 1.150 -2.439 ETKDGv3 82
9GI H38 2.509 -0.465 -2.097 ETKDGv3 83
9GI H39 4.137 -1.532 -3.684 ETKDGv3 84
9GI H40 3.079 -0.302 -4.473 ETKDGv3 85
9GI H41 4.790 0.111 -4.086 ETKDGv3 86
9GI H42 4.957 -0.988 1.907 ETKDGv3 87
9GI H43 6.084 -1.208 0.541 ETKDGv3 88
9GI H44 3.632 -3.023 1.176 ETKDGv3 89
9GI H45 6.235 -3.044 2.422 ETKDGv3 90
9GI H46 5.076 -4.416 2.312 ETKDGv3 91
9GI H47 7.593 -3.942 0.729 ETKDGv3 92
9GI H48 6.704 -5.494 1.056 ETKDGv3 93
9GI H49 2.307 -1.056 1.037 ETKDGv3 94
9GI H50 6.339 -4.805 -1.416 ETKDGv3 95
9GI H51 -2.086 -2.183 -1.441 ETKDGv3 96
#