data_9KY
#
_chem_comp.id 9KY
_chem_comp.name (2S)-N,2-dicyclohexyl-2-{2-[4-(hydroxymethyl)phenyl]-1H-benzimidazol-1-yl}acetamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H35 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-05-19
_chem_comp.pdbx_modified_date 2017-06-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 445.596
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9KY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5Q0L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9KY N3 N1 N 0 1 Y N N N N N 12.930 15.710 -2.271 -1.464 -2.994 0.998 N3 9KY 1
9KY C4 C1 C 0 1 N N N N N N 12.495 19.697 -4.466 0.300 0.785 0.261 C4 9KY 2
9KY C5 C2 C 0 1 N N S N N N 13.289 18.418 -4.746 -0.783 0.172 -0.589 C5 9KY 3
9KY C6 C3 C 0 1 Y N N N N N 11.478 16.811 -3.672 -2.625 -1.152 0.553 C6 9KY 4
9KY C7 C4 C 0 1 Y N N N N N 11.604 15.816 -2.698 -2.691 -2.433 1.130 C7 9KY 5
9KY C13 C5 C 0 1 Y N N N N N 16.013 16.282 -3.624 1.413 -1.657 -0.899 C13 9KY 6
9KY C15 C6 C 0 1 Y N N N N N 16.739 18.073 -1.646 2.772 -3.681 0.425 C15 9KY 7
9KY C17 C7 C 0 1 Y N N N N N 17.728 17.495 -2.421 3.416 -2.919 -0.534 C17 9KY 8
9KY C21 C8 C 0 1 N N N N N N 19.170 17.845 -2.183 4.862 -3.189 -0.860 C21 9KY 9
9KY C22 C9 C 0 1 N N N N N N 13.003 16.621 -6.593 -1.295 2.484 -1.386 C22 9KY 10
9KY C24 C10 C 0 1 N N N N N N 12.779 21.972 -1.680 1.383 3.552 1.417 C24 9KY 11
9KY C26 C11 C 0 1 Y N N N N N 9.134 16.380 -3.843 -4.926 -0.796 1.105 C26 9KY 12
9KY C28 C12 C 0 1 N N N N N N 13.875 18.577 -8.668 -4.032 1.658 -2.025 C28 9KY 13
9KY C1 C13 C 0 1 Y N N N N N 13.591 16.612 -2.976 -0.661 -2.158 0.387 C1 9KY 14
9KY N2 N2 N 0 1 Y N N N N N 12.789 17.314 -3.842 -1.333 -1.003 0.091 N2 9KY 15
9KY O10 O1 O 0 1 N N N N N N 11.903 20.303 -5.347 0.482 0.385 1.392 O10 9KY 16
9KY N8 N3 N 0 1 N N N N N N 12.515 20.080 -3.188 1.067 1.776 -0.235 N8 9KY 17
9KY C14 C14 C 0 1 N N N N N N 11.844 21.260 -2.656 2.058 2.433 0.621 C14 9KY 18
9KY C31 C15 C 0 1 N N N N N N 12.099 23.162 -1.022 2.418 4.239 2.310 C31 9KY 19
9KY C32 C16 C 0 1 N N N N N N 10.823 22.742 -0.313 3.530 4.830 1.441 C32 9KY 20
9KY C30 C17 C 0 1 N N N N N N 9.860 22.056 -1.296 4.205 3.711 0.646 C30 9KY 21
9KY C25 C18 C 0 1 N N N N N N 10.531 20.858 -1.972 3.170 3.024 -0.248 C25 9KY 22
9KY C11 C19 C 0 1 N N N N N N 13.619 17.962 -6.197 -1.895 1.198 -0.814 C11 9KY 23
9KY C29 C20 C 0 1 N N N N N N 13.595 16.115 -7.921 -2.408 3.510 -1.611 C29 9KY 24
9KY C33 C21 C 0 1 N N N N N N 13.381 17.124 -9.060 -3.432 2.944 -2.596 C33 9KY 25
9KY C23 C22 C 0 1 N N N N N N 13.320 19.017 -7.270 -2.920 0.632 -1.800 C23 9KY 26
9KY C19 C23 C 0 1 Y N N N N N 10.478 15.097 -2.293 -3.894 -2.873 1.691 C19 9KY 27
9KY C27 C24 C 0 1 Y N N N N N 9.249 15.390 -2.874 -4.991 -2.060 1.674 C27 9KY 28
9KY C18 C25 C 0 1 Y N N N N N 10.255 17.114 -4.262 -3.751 -0.340 0.547 C18 9KY 29
9KY C9 C26 C 0 1 Y N N N N N 15.029 16.863 -2.834 0.758 -2.423 0.067 C9 9KY 30
9KY C12 C27 C 0 1 Y N N N N N 15.412 17.767 -1.846 1.448 -3.439 0.729 C12 9KY 31
9KY C16 C28 C 0 1 Y N N N N N 17.350 16.595 -3.415 2.737 -1.910 -1.194 C16 9KY 32
9KY O20 O2 O 0 1 N N N N N N 19.991 17.554 -3.296 4.940 -4.150 -1.915 O20 9KY 33
9KY H1 H1 H 0 1 N N N N N N 14.282 18.649 -4.333 -0.365 -0.127 -1.550 H1 9KY 34
9KY H2 H2 H 0 1 N N N N N N 15.738 15.586 -4.402 0.883 -0.872 -1.418 H2 9KY 35
9KY H3 H3 H 0 1 N N N N N N 17.012 18.775 -0.872 3.307 -4.468 0.936 H3 9KY 36
9KY H4 H4 H 0 1 N N N N N N 19.533 17.271 -1.318 5.342 -2.263 -1.176 H4 9KY 37
9KY H5 H5 H 0 1 N N N N N N 19.240 18.921 -1.965 5.368 -3.577 0.023 H5 9KY 38
9KY H6 H6 H 0 1 N N N N N N 11.916 16.744 -6.707 -0.566 2.888 -0.683 H6 9KY 39
9KY H7 H7 H 0 1 N N N N N N 13.208 15.883 -5.803 -0.805 2.266 -2.334 H7 9KY 40
9KY H8 H8 H 0 1 N N N N N N 13.089 21.261 -0.900 0.956 4.281 0.728 H8 9KY 41
9KY H9 H9 H 0 1 N N N N N N 13.665 22.325 -2.228 0.591 3.131 2.036 H9 9KY 42
9KY H10 H10 H 0 1 N N N N N N 8.168 16.588 -4.280 -5.803 -0.165 1.100 H10 9KY 43
9KY H11 H11 H 0 1 N N N N N N 14.974 18.583 -8.634 -4.523 1.876 -1.076 H11 9KY 44
9KY H12 H12 H 0 1 N N N N N N 13.528 19.290 -9.430 -4.762 1.254 -2.727 H12 9KY 45
9KY H13 H13 H 0 1 N N N N N N 13.030 19.514 -2.545 0.963 2.054 -1.158 H13 9KY 46
9KY H14 H14 H 0 1 N N N N N N 11.609 21.950 -3.480 2.484 1.704 1.310 H14 9KY 47
9KY H15 H15 H 0 1 N N N N N N 12.787 23.608 -0.289 1.937 5.036 2.877 H15 9KY 48
9KY H16 H16 H 0 1 N N N N N N 11.853 23.906 -1.794 2.844 3.509 2.999 H16 9KY 49
9KY H17 H17 H 0 1 N N N N N N 10.335 23.632 0.110 3.103 5.559 0.753 H17 9KY 50
9KY H18 H18 H 0 1 N N N N N N 11.073 22.041 0.497 4.267 5.319 2.078 H18 9KY 51
9KY H19 H19 H 0 1 N N N N N N 9.555 22.780 -2.066 4.997 4.132 0.027 H19 9KY 52
9KY H20 H20 H 0 1 N N N N N N 8.972 21.709 -0.747 4.631 2.982 1.335 H20 9KY 53
9KY H21 H21 H 0 1 N N N N N N 9.847 20.445 -2.727 3.651 2.227 -0.814 H21 9KY 54
9KY H22 H22 H 0 1 N N N N N N 10.744 20.092 -1.212 2.744 3.754 -0.937 H22 9KY 55
9KY H23 H23 H 0 1 N N N N N N 14.708 17.812 -6.219 -2.386 1.416 0.134 H23 9KY 56
9KY H24 H24 H 0 1 N N N N N N 13.108 15.166 -8.190 -2.898 3.728 -0.662 H24 9KY 57
9KY H25 H25 H 0 1 N N N N N N 14.674 15.949 -7.790 -1.980 4.427 -2.018 H25 9KY 58
9KY H26 H26 H 0 1 N N N N N N 12.308 17.166 -9.300 -2.941 2.726 -3.545 H26 9KY 59
9KY H27 H27 H 0 1 N N N N N N 13.941 16.785 -9.944 -4.225 3.675 -2.757 H27 9KY 60
9KY H28 H28 H 0 1 N N N N N N 13.792 19.967 -6.980 -3.347 -0.284 -1.393 H28 9KY 61
9KY H29 H29 H 0 1 N N N N N N 12.231 19.155 -7.344 -2.429 0.414 -2.749 H29 9KY 62
9KY H30 H30 H 0 1 N N N N N N 10.560 14.326 -1.541 -3.955 -3.855 2.137 H30 9KY 63
9KY H31 H31 H 0 1 N N N N N N 8.371 14.840 -2.568 -5.918 -2.404 2.109 H31 9KY 64
9KY H32 H32 H 0 1 N N N N N N 10.171 17.885 -5.014 -3.707 0.645 0.105 H32 9KY 65
9KY H33 H33 H 0 1 N N N N N N 14.658 18.234 -1.229 0.947 -4.035 1.477 H33 9KY 66
9KY H34 H34 H 0 1 N N N N N N 18.107 16.134 -4.032 3.245 -1.318 -1.941 H34 9KY 67
9KY H35 H35 H 0 1 N N N N N N 20.889 17.792 -3.098 5.844 -4.372 -2.178 H35 9KY 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9KY C33 C28 SING N N 1
9KY C33 C29 SING N N 2
9KY C28 C23 SING N N 3
9KY C29 C22 SING N N 4
9KY C23 C11 SING N N 5
9KY C22 C11 SING N N 6
9KY C11 C5 SING N N 7
9KY O10 C4 DOUB N N 8
9KY C5 C4 SING N N 9
9KY C5 N2 SING N N 10
9KY C4 N8 SING N N 11
9KY C18 C26 DOUB Y N 12
9KY C18 C6 SING Y N 13
9KY C26 C27 SING Y N 14
9KY N2 C6 SING Y N 15
9KY N2 C1 SING Y N 16
9KY C6 C7 DOUB Y N 17
9KY C13 C16 DOUB Y N 18
9KY C13 C9 SING Y N 19
9KY C16 C17 SING Y N 20
9KY O20 C21 SING N N 21
9KY N8 C14 SING N N 22
9KY C1 C9 SING N N 23
9KY C1 N3 DOUB Y N 24
9KY C27 C19 DOUB Y N 25
9KY C9 C12 DOUB Y N 26
9KY C7 C19 SING Y N 27
9KY C7 N3 SING Y N 28
9KY C14 C25 SING N N 29
9KY C14 C24 SING N N 30
9KY C17 C21 SING N N 31
9KY C17 C15 DOUB Y N 32
9KY C25 C30 SING N N 33
9KY C12 C15 SING Y N 34
9KY C24 C31 SING N N 35
9KY C30 C32 SING N N 36
9KY C31 C32 SING N N 37
9KY C5 H1 SING N N 38
9KY C13 H2 SING N N 39
9KY C15 H3 SING N N 40
9KY C21 H4 SING N N 41
9KY C21 H5 SING N N 42
9KY C22 H6 SING N N 43
9KY C22 H7 SING N N 44
9KY C24 H8 SING N N 45
9KY C24 H9 SING N N 46
9KY C26 H10 SING N N 47
9KY C28 H11 SING N N 48
9KY C28 H12 SING N N 49
9KY N8 H13 SING N N 50
9KY C14 H14 SING N N 51
9KY C31 H15 SING N N 52
9KY C31 H16 SING N N 53
9KY C32 H17 SING N N 54
9KY C32 H18 SING N N 55
9KY C30 H19 SING N N 56
9KY C30 H20 SING N N 57
9KY C25 H21 SING N N 58
9KY C25 H22 SING N N 59
9KY C11 H23 SING N N 60
9KY C29 H24 SING N N 61
9KY C29 H25 SING N N 62
9KY C33 H26 SING N N 63
9KY C33 H27 SING N N 64
9KY C23 H28 SING N N 65
9KY C23 H29 SING N N 66
9KY C19 H30 SING N N 67
9KY C27 H31 SING N N 68
9KY C18 H32 SING N N 69
9KY C12 H33 SING N N 70
9KY C16 H34 SING N N 71
9KY O20 H35 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9KY SMILES ACDLabs 12.01 n3c5c(n(C(C(NC1CCCCC1)=O)C2CCCCC2)c3c4ccc(cc4)CO)cccc5
9KY InChI InChI 1.03 InChI=1S/C28H35N3O2/c32-19-20-15-17-22(18-16-20)27-30-24-13-7-8-14-25(24)31(27)26(21-9-3-1-4-10-21)28(33)29-23-11-5-2-6-12-23/h7-8,13-18,21,23,26,32H,1-6,9-12,19H2,(H,29,33)/t26-/m0/s1
9KY InChIKey InChI 1.03 VNQAIQZVCULCDE-SANMLTNESA-N
9KY SMILES_CANONICAL CACTVS 3.385 OCc1ccc(cc1)c2nc3ccccc3n2[C@@H](C4CCCCC4)C(=O)NC5CCCCC5
9KY SMILES CACTVS 3.385 OCc1ccc(cc1)c2nc3ccccc3n2[CH](C4CCCCC4)C(=O)NC5CCCCC5
9KY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc2c(c1)nc(n2[C@@H](C3CCCCC3)C(=O)NC4CCCCC4)c5ccc(cc5)CO
9KY SMILES "OpenEye OEToolkits" 2.0.6 c1ccc2c(c1)nc(n2C(C3CCCCC3)C(=O)NC4CCCCC4)c5ccc(cc5)CO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9KY "SYSTEMATIC NAME" ACDLabs 12.01 (2S)-N,2-dicyclohexyl-2-{2-[4-(hydroxymethyl)phenyl]-1H-benzimidazol-1-yl}acetamide
9KY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (2~{S})-~{N},2-dicyclohexyl-2-[2-[4-(hydroxymethyl)phenyl]benzimidazol-1-yl]ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9KY 'Create component' 2017-05-19 RCSB
9KY 'Initial release' 2017-07-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9KY N3 N 7.018 -1.931 1
9KY C4 C 8.951 2.219 2
9KY C5 C 7.483 1.909 3
9KY C6 C 5.598 0.026 4
9KY C7 C 5.598 -1.474 5
9KY C13 C 9.192 -2.974 6
9KY C15 C 11.790 -1.474 7
9KY C17 C 11.790 -2.974 8
9KY C21 C 13.089 -3.724 9
9KY C22 C 5.014 2.716 10
9KY C24 C 11.351 5.380 11
9KY C26 C 3.000 0.026 12
9KY C28 C 5.946 5.568 13
9KY C1 C 7.893 -0.724 14
9KY N2 N 7.018 0.483 15
9KY O10 O 9.953 1.102 16
9KY N8 N 9.417 3.644 17
9KY C14 C 10.885 3.954 18
9KY C31 C 12.819 5.689 19
9KY C32 C 13.820 4.572 20
9KY C30 C 13.354 3.146 21
9KY C25 C 11.887 2.837 22
9KY C11 C 6.482 3.026 23
9KY C29 C 4.012 3.833 24
9KY C33 C 4.478 5.258 25
9KY C23 C 6.948 4.451 26
9KY C19 C 4.299 -2.224 27
9KY C27 C 3.000 -1.474 28
9KY C18 C 4.299 0.776 29
9KY C9 C 9.192 -1.474 30
9KY C12 C 10.491 -0.724 31
9KY C16 C 10.491 -3.724 32
9KY O20 O 13.089 -5.224 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9KY C33 C28 SINGLE NONE 1
9KY C33 C29 SINGLE NONE 2
9KY C28 C23 SINGLE NONE 3
9KY C29 C22 SINGLE NONE 4
9KY C23 C11 SINGLE NONE 5
9KY C22 C11 SINGLE NONE 6
9KY C5 C11 SINGLE BEGINWEDGE 7
9KY O10 C4 DOUBLE NONE 8
9KY C5 C4 SINGLE NONE 9
9KY C5 N2 SINGLE NONE 10
9KY C4 N8 SINGLE NONE 11
9KY C18 C26 DOUBLE NONE 12
9KY C18 C6 SINGLE NONE 13
9KY C26 C27 SINGLE NONE 14
9KY N2 C6 SINGLE NONE 15
9KY N2 C1 SINGLE NONE 16
9KY C6 C7 DOUBLE NONE 17
9KY C13 C16 DOUBLE NONE 18
9KY C13 C9 SINGLE NONE 19
9KY C16 C17 SINGLE NONE 20
9KY O20 C21 SINGLE NONE 21
9KY N8 C14 SINGLE NONE 22
9KY C1 C9 SINGLE NONE 23
9KY C1 N3 DOUBLE NONE 24
9KY C27 C19 DOUBLE NONE 25
9KY C9 C12 DOUBLE NONE 26
9KY C7 C19 SINGLE NONE 27
9KY C7 N3 SINGLE NONE 28
9KY C14 C25 SINGLE NONE 29
9KY C14 C24 SINGLE NONE 30
9KY C17 C21 SINGLE NONE 31
9KY C17 C15 DOUBLE NONE 32
9KY C25 C30 SINGLE NONE 33
9KY C12 C15 SINGLE NONE 34
9KY C24 C31 SINGLE NONE 35
9KY C30 C32 SINGLE NONE 36
9KY C31 C32 SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9KY MurckoScaffold S1 scaffold 'O=C(NC1CCCCC1)[C@H](C1CCCCC1)n1c(-c2ccccc2)nc2ccccc21' InChI=1S/C27H33N3O/c31-27(28-22-16-8-3-9-17-22)25(20-12-4-1-5-13-20)30-24-19-11-10-18-23(24)29-26(30)21-14-6-2-7-15-21/h2,6-7,10-11,14-15,18-20,22,25H,1,3-5,8-9,12-13,16-17H2,(H,28,31)/t25-/m0/s1 LUTMMGPBXMXVGO-VWLOTQADSA-N
9KY amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9KY benzimidazole F2 fragment 'c1ccc2[nH]cnc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)8-5-9-7/h1-5H,(H,8,9) HYZJCKYKOHLVJF-UHFFFAOYSA-N
9KY cyclohexane F3 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
9KY imidazole F4 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
9KY peptide F5 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
9KY phenyl F6 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9KY Z2856434901 F7 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9KY N3 S1 1
9KY C4 S1 1
9KY C5 S1 1
9KY C6 S1 1
9KY C7 S1 1
9KY C13 S1 1
9KY C15 S1 1
9KY C17 S1 1
9KY C22 S1 1
9KY C24 S1 1
9KY C26 S1 1
9KY C28 S1 1
9KY C1 S1 1
9KY N2 S1 1
9KY O10 S1 1
9KY N8 S1 1
9KY C14 S1 1
9KY C31 S1 1
9KY C32 S1 1
9KY C30 S1 1
9KY C25 S1 1
9KY C11 S1 1
9KY C29 S1 1
9KY C33 S1 1
9KY C23 S1 1
9KY C19 S1 1
9KY C27 S1 1
9KY C18 S1 1
9KY C9 S1 1
9KY C12 S1 1
9KY C16 S1 1
9KY N8 F1 1
9KY C4 F1 1
9KY O10 F1 1
9KY C5 F1 1
9KY C6 F2 1
9KY N2 F2 1
9KY C1 F2 1
9KY N3 F2 1
9KY C7 F2 1
9KY C19 F2 1
9KY C27 F2 1
9KY C26 F2 1
9KY C18 F2 1
9KY C22 F3 1
9KY C29 F3 1
9KY C33 F3 1
9KY C28 F3 1
9KY C23 F3 1
9KY C11 F3 1
9KY C24 F3 2
9KY C14 F3 2
9KY C25 F3 2
9KY C30 F3 2
9KY C32 F3 2
9KY C31 F3 2
9KY C6 F4 1
9KY C7 F4 1
9KY N3 F4 1
9KY C1 F4 1
9KY N2 F4 1
9KY O10 F5 1
9KY C4 F5 1
9KY C5 F5 1
9KY N2 F5 1
9KY C6 F6 1
9KY C18 F6 1
9KY C26 F6 1
9KY C27 F6 1
9KY C19 F6 1
9KY C7 F6 1
9KY C13 F6 2
9KY C16 F6 2
9KY C17 F6 2
9KY C15 F6 2
9KY C12 F6 2
9KY C9 F6 2
9KY C14 F7 1
9KY N8 F7 1
9KY C4 F7 1
9KY C5 F7 1
9KY C11 F7 1
9KY C23 F7 1
9KY C28 F7 1
9KY C33 F7 1
9KY C29 F7 1
9KY C22 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9KY
_pdbe_chem_comp_rdkit_properties.exactmw 445.273
_pdbe_chem_comp_rdkit_properties.amw 445.607
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 245.096
_pdbe_chem_comp_rdkit_properties.tpsa 67.150
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.903
_pdbe_chem_comp_rdkit_properties.CrippenMR 127.926
_pdbe_chem_comp_rdkit_properties.chi0v 16.158
_pdbe_chem_comp_rdkit_properties.chi1v 8.973
_pdbe_chem_comp_rdkit_properties.chi2v 4.116
_pdbe_chem_comp_rdkit_properties.chi3v 4.116
_pdbe_chem_comp_rdkit_properties.chi4v 2.801
_pdbe_chem_comp_rdkit_properties.chi0n 51.158
_pdbe_chem_comp_rdkit_properties.chi1n 26.329
_pdbe_chem_comp_rdkit_properties.chi2n 4.116
_pdbe_chem_comp_rdkit_properties.chi3n 4.116
_pdbe_chem_comp_rdkit_properties.chi4n 2.801
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.660
_pdbe_chem_comp_rdkit_properties.kappa1 5.432
_pdbe_chem_comp_rdkit_properties.kappa2 10.084
_pdbe_chem_comp_rdkit_properties.kappa3 4.696
_pdbe_chem_comp_rdkit_properties.Phi 1.660
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9KY UniChem PDBe 9KY
9KY UniChem SureChEMBL SCHEMBL4756079
9KY UniChem 'PubChem TPHARMA' 56457642
9KY UniChem PubChem 25133131
9KY UniChem BindingDb 225919
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9KY N3 2.837 -0.228 2.023 ETKDGv3 1
9KY C4 -0.965 0.697 0.941 ETKDGv3 2
9KY C5 0.095 1.690 0.506 ETKDGv3 3
9KY C6 2.060 1.878 2.133 ETKDGv3 4
9KY C7 2.859 1.011 2.710 ETKDGv3 5
9KY C13 1.354 -2.447 0.513 ETKDGv3 6
9KY C15 1.761 -1.974 -2.232 ETKDGv3 7
9KY C17 1.330 -3.179 -1.821 ETKDGv3 8
9KY C21 1.097 -4.289 -2.807 ETKDGv3 9
9KY C22 1.236 3.033 -1.396 ETKDGv3 10
9KY C24 -3.206 -1.742 -0.931 ETKDGv3 11
9KY C26 2.631 3.594 3.745 ETKDGv3 12
9KY C28 -1.638 3.915 -0.991 ETKDGv3 13
9KY C1 2.007 -0.041 1.041 ETKDGv3 14
9KY N2 1.424 1.283 1.005 ETKDGv3 15
9KY O10 -1.455 0.813 2.098 ETKDGv3 16
9KY N8 -1.409 -0.373 0.088 ETKDGv3 17
9KY C14 -2.632 -1.132 0.373 ETKDGv3 18
9KY C31 -2.615 -3.127 -1.215 ETKDGv3 19
9KY C32 -2.917 -4.129 -0.082 ETKDGv3 20
9KY C30 -3.197 -3.457 1.276 ETKDGv3 21
9KY C25 -2.348 -2.196 1.463 ETKDGv3 22
9KY C11 0.107 2.019 -1.021 ETKDGv3 23
9KY C29 0.727 4.432 -1.788 ETKDGv3 24
9KY C33 -0.432 4.871 -0.892 ETKDGv3 25
9KY C23 -1.272 2.517 -1.524 ETKDGv3 26
9KY C19 3.645 1.356 3.905 ETKDGv3 27
9KY C27 3.530 2.601 4.402 ETKDGv3 28
9KY C18 1.922 3.254 2.653 ETKDGv3 29
9KY C9 1.761 -1.100 0.052 ETKDGv3 30
9KY C12 2.000 -0.894 -1.253 ETKDGv3 31
9KY C16 1.145 -3.429 -0.371 ETKDGv3 32
9KY O20 2.302 -4.948 -3.085 ETKDGv3 33
9KY H1 -0.177 2.641 1.007 ETKDGv3 34
9KY H2 1.216 -2.639 1.570 ETKDGv3 35
9KY H3 1.936 -1.779 -3.283 ETKDGv3 36
9KY H4 0.343 -5.008 -2.413 ETKDGv3 37
9KY H5 0.686 -3.877 -3.753 ETKDGv3 38
9KY H6 1.817 2.629 -2.254 ETKDGv3 39
9KY H7 1.963 3.154 -0.566 ETKDGv3 40
9KY H8 -4.310 -1.840 -0.838 ETKDGv3 41
9KY H9 -3.015 -1.067 -1.793 ETKDGv3 42
9KY H10 2.556 4.596 4.148 ETKDGv3 43
9KY H11 -2.107 3.818 0.012 ETKDGv3 44
9KY H12 -2.403 4.358 -1.666 ETKDGv3 45
9KY H13 -0.885 -0.583 -0.788 ETKDGv3 46
9KY H14 -3.405 -0.429 0.757 ETKDGv3 47
9KY H15 -1.517 -3.026 -1.340 ETKDGv3 48
9KY H16 -3.023 -3.515 -2.173 ETKDGv3 49
9KY H17 -3.799 -4.746 -0.359 ETKDGv3 50
9KY H18 -2.051 -4.820 0.022 ETKDGv3 51
9KY H19 -2.982 -4.176 2.096 ETKDGv3 52
9KY H20 -4.273 -3.184 1.343 ETKDGv3 53
9KY H21 -2.550 -1.763 2.466 ETKDGv3 54
9KY H22 -1.279 -2.494 1.441 ETKDGv3 55
9KY H23 0.316 1.089 -1.578 ETKDGv3 56
9KY H24 1.559 5.165 -1.705 ETKDGv3 57
9KY H25 0.391 4.427 -2.848 ETKDGv3 58
9KY H26 -0.749 5.897 -1.177 ETKDGv3 59
9KY H27 -0.076 4.918 0.161 ETKDGv3 60
9KY H28 -2.080 1.802 -1.263 ETKDGv3 61
9KY H29 -1.245 2.556 -2.635 ETKDGv3 62
9KY H30 4.297 0.628 4.370 ETKDGv3 63
9KY H31 4.095 2.887 5.279 ETKDGv3 64
9KY H32 1.285 3.980 2.168 ETKDGv3 65
9KY H33 2.383 0.056 -1.601 ETKDGv3 66
9KY H34 0.837 -4.407 -0.023 ETKDGv3 67
9KY H35 2.500 -5.520 -2.298 ETKDGv3 68
#