data_9P2
#
_chem_comp.id 9P2
_chem_comp.name
1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H35 N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-06-19
_chem_comp.pdbx_modified_date 2018-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 573.681
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9P2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5O9H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9P2 C15 C1 C 0 1 Y N N N N N 102.111 -11.354 29.647 1.819 4.313 -1.379 C15 9P2 1
9P2 C16 C2 C 0 1 Y N N N N N 102.308 -12.603 29.052 1.522 3.847 -2.650 C16 9P2 2
9P2 C17 C3 C 0 1 Y N N N N N 103.477 -13.254 29.206 0.581 2.833 -2.813 C17 9P2 3
9P2 C18 C4 C 0 1 Y N N N N N 104.570 -12.648 30.018 -0.052 2.296 -1.705 C18 9P2 4
9P2 C20 C5 C 0 1 N N N N N N 102.003 -14.652 28.081 1.641 3.120 -4.758 C20 9P2 5
9P2 C01 C6 C 0 1 Y N N N N N 102.449 -14.099 32.942 -2.674 -1.788 -0.162 C01 9P2 6
9P2 N02 N1 N 0 1 Y N N N N N 103.606 -14.892 32.779 -3.510 -0.859 0.242 N02 9P2 7
9P2 C03 C7 C 0 1 Y N N N N N 104.697 -14.142 33.026 -2.874 -0.035 1.095 C03 9P2 8
9P2 C04 C8 C 0 1 Y N N N N N 104.238 -12.834 33.376 -1.592 -0.470 1.226 C04 9P2 9
9P2 N05 N2 N 0 1 Y N N N N N 102.844 -12.857 33.290 -1.465 -1.576 0.434 N05 9P2 10
9P2 C06 C9 C 0 1 N N N N N N 102.017 -11.757 33.584 -0.255 -2.384 0.257 C06 9P2 11
9P2 C07 C10 C 0 1 N N N N N N 101.884 -11.731 35.112 0.612 -1.770 -0.843 C07 9P2 12
9P2 C08 C11 C 0 1 N N N N N N 100.798 -10.764 35.661 1.875 -2.614 -1.028 C08 9P2 13
9P2 C09 C12 C 0 1 N N N N N N 100.709 -10.876 37.220 2.742 -2.000 -2.128 C09 9P2 14
9P2 C10 C13 C 0 1 N N N N N N 105.126 -11.573 33.743 -0.517 0.150 2.082 C10 9P2 15
9P2 N11 N3 N 0 1 N N N N N N 104.836 -10.501 32.810 0.323 1.026 1.254 N11 9P2 16
9P2 C12 C14 C 0 1 N N N N N N 105.454 -10.742 31.467 -0.442 2.180 0.764 C12 9P2 17
9P2 C13 C15 C 0 1 Y N N N N N 104.374 -11.397 30.608 0.249 2.766 -0.440 C13 9P2 18
9P2 C14 C16 C 0 1 Y N N N N N 103.189 -10.750 30.453 1.183 3.772 -0.278 C14 9P2 19
9P2 O19 O1 O 0 1 N N N N N N 103.400 -14.503 28.487 0.468 2.554 -4.145 O19 9P2 20
9P2 O21 O2 O 0 1 N N N N N N 101.413 -13.376 28.233 1.998 4.203 -3.879 O21 9P2 21
9P2 C22 C17 C 0 1 N N N N N N 105.152 -9.203 33.363 1.517 1.460 1.992 C22 9P2 22
9P2 C23 C18 C 0 1 Y N N N N N 103.802 -8.524 33.793 2.503 0.323 2.066 C23 9P2 23
9P2 C24 C19 C 0 1 Y N N N N N 103.611 -8.084 35.074 3.470 0.184 1.089 C24 9P2 24
9P2 C25 C20 C 0 1 Y N N N N N 102.304 -7.448 35.451 4.378 -0.861 1.156 C25 9P2 25
9P2 O26 O3 O 0 1 N N N N N N 101.849 -6.930 36.623 5.410 -1.217 0.336 O26 9P2 26
9P2 C27 C21 C 0 1 N N N N N N 100.668 -6.225 36.311 5.717 -2.582 0.676 C27 9P2 27
9P2 O28 O4 O 0 1 N N N N N N 100.223 -6.708 35.106 5.304 -2.694 2.051 O28 9P2 28
9P2 C29 C22 C 0 1 Y N N N N N 101.298 -7.310 34.513 4.313 -1.769 2.210 C29 9P2 29
9P2 C30 C23 C 0 1 Y N N N N N 101.498 -7.776 33.171 3.340 -1.623 3.186 C30 9P2 30
9P2 C31 C24 C 0 1 Y N N N N N 102.746 -8.382 32.815 2.441 -0.575 3.116 C31 9P2 31
9P2 C32 C25 C 0 1 Y N N N N N 105.985 -14.593 32.977 -3.469 1.143 1.773 C32 9P2 32
9P2 C33 C26 C 0 1 Y N N N N N 106.464 -15.248 31.845 -4.293 2.016 1.066 C33 9P2 33
9P2 C34 C27 C 0 1 Y N N N N N 107.801 -15.726 31.822 -4.843 3.110 1.702 C34 9P2 34
9P2 C35 C28 C 0 1 Y N N N N N 108.637 -15.554 32.932 -4.577 3.342 3.039 C35 9P2 35
9P2 C36 C29 C 0 1 Y N N N N N 108.147 -14.896 34.092 -3.759 2.479 3.747 C36 9P2 36
9P2 C37 C30 C 0 1 Y N N N N N 106.834 -14.429 34.115 -3.209 1.378 3.122 C37 9P2 37
9P2 C38 C31 C 0 1 Y N N N N N 101.076 -14.591 32.744 -2.993 -2.886 -1.100 C38 9P2 38
9P2 C39 C32 C 0 1 Y N N N N N 100.160 -13.894 31.936 -4.319 -3.268 -1.308 C39 9P2 39
9P2 C40 C33 C 0 1 Y N N N N N 98.869 -14.366 31.751 -4.610 -4.292 -2.185 C40 9P2 40
9P2 C41 C34 C 0 1 Y N N N N N 98.479 -15.533 32.347 -3.590 -4.941 -2.859 C41 9P2 41
9P2 C42 C35 C 0 1 Y N N N N N 99.398 -16.242 33.149 -2.273 -4.567 -2.657 C42 9P2 42
9P2 C43 C36 C 0 1 Y N N N N N 100.691 -15.758 33.331 -1.969 -3.540 -1.787 C43 9P2 43
9P2 H1 H1 H 0 1 N N N N N N 101.174 -10.833 29.517 2.551 5.096 -1.249 H1 9P2 44
9P2 H2 H2 H 0 1 N N N N N N 105.505 -13.171 30.149 -0.782 1.510 -1.829 H2 9P2 45
9P2 H3 H3 H 0 1 N N N N N N 101.495 -15.387 28.723 2.444 2.383 -4.802 H3 9P2 46
9P2 H4 H4 H 0 1 N N N N N N 101.943 -14.978 27.032 1.410 3.496 -5.754 H4 9P2 47
9P2 H5 H5 H 0 1 N N N N N N 102.477 -10.825 33.224 0.306 -2.407 1.192 H5 9P2 48
9P2 H6 H6 H 0 1 N N N N N N 101.030 -11.884 33.116 -0.535 -3.399 -0.024 H6 9P2 49
9P2 H7 H7 H 0 1 N N N N N N 101.638 -12.748 35.450 0.051 -1.747 -1.778 H7 9P2 50
9P2 H8 H8 H 0 1 N N N N N N 102.854 -11.429 35.534 0.891 -0.754 -0.562 H8 9P2 51
9P2 H9 H9 H 0 1 N N N N N N 101.059 -9.731 35.386 2.436 -2.637 -0.093 H9 9P2 52
9P2 H10 H10 H 0 1 N N N N N N 99.824 -11.026 35.222 1.596 -3.629 -1.309 H10 9P2 53
9P2 H11 H11 H 0 1 N N N N N N 99.937 -10.187 37.594 2.181 -1.977 -3.062 H11 9P2 54
9P2 H12 H12 H 0 1 N N N N N N 100.446 -11.907 37.499 3.022 -0.984 -1.847 H12 9P2 55
9P2 H13 H13 H 0 1 N N N N N N 101.681 -10.613 37.662 3.642 -2.601 -2.259 H13 9P2 56
9P2 H14 H14 H 0 1 N N N N N N 106.191 -11.841 33.677 -0.979 0.735 2.877 H14 9P2 57
9P2 H15 H15 H 0 1 N N N N N N 104.893 -11.244 34.766 0.098 -0.637 2.519 H15 9P2 58
9P2 H17 H17 H 0 1 N N N N N N 106.322 -11.411 31.562 -1.446 1.859 0.486 H17 9P2 59
9P2 H18 H18 H 0 1 N N N N N N 105.772 -9.790 31.018 -0.506 2.933 1.549 H18 9P2 60
9P2 H19 H19 H 0 1 N N N N N N 103.036 -9.789 30.922 1.419 4.134 0.712 H19 9P2 61
9P2 H20 H20 H 0 1 N N N N N N 105.808 -9.319 34.238 1.974 2.305 1.477 H20 9P2 62
9P2 H21 H21 H 0 1 N N N N N N 105.657 -8.586 32.605 1.231 1.761 3.000 H21 9P2 63
9P2 H22 H22 H 0 1 N N N N N N 104.395 -8.193 35.809 3.518 0.889 0.273 H22 9P2 64
9P2 H23 H23 H 0 1 N N N N N N 100.880 -5.148 36.232 5.149 -3.270 0.048 H23 9P2 65
9P2 H24 H24 H 0 1 N N N N N N 99.910 -6.394 37.090 6.786 -2.770 0.578 H24 9P2 66
9P2 H25 H25 H 0 1 N N N N N N 100.714 -7.671 32.435 3.287 -2.326 4.004 H25 9P2 67
9P2 H26 H26 H 0 1 N N N N N N 102.900 -8.736 31.806 1.684 -0.463 3.877 H26 9P2 68
9P2 H27 H27 H 0 1 N N N N N N 105.822 -15.392 30.989 -4.501 1.837 0.021 H27 9P2 69
9P2 H28 H28 H 0 1 N N N N N N 108.176 -16.226 30.941 -5.482 3.787 1.154 H28 9P2 70
9P2 H29 H29 H 0 1 N N N N N N 109.652 -15.921 32.906 -5.009 4.200 3.533 H29 9P2 71
9P2 H30 H30 H 0 1 N N N N N N 108.788 -14.759 34.950 -3.555 2.665 4.791 H30 9P2 72
9P2 H31 H31 H 0 1 N N N N N N 106.455 -13.939 35.000 -2.575 0.703 3.677 H31 9P2 73
9P2 H32 H32 H 0 1 N N N N N N 100.466 -12.978 31.453 -5.116 -2.763 -0.782 H32 9P2 74
9P2 H33 H33 H 0 1 N N N N N N 98.173 -13.813 31.137 -5.635 -4.589 -2.346 H33 9P2 75
9P2 H34 H34 H 0 1 N N N N N N 97.476 -15.909 32.205 -3.822 -5.742 -3.544 H34 9P2 76
9P2 H35 H35 H 0 1 N N N N N N 99.097 -17.164 33.624 -1.481 -5.077 -3.186 H35 9P2 77
9P2 H36 H36 H 0 1 N N N N N N 101.391 -16.310 33.940 -0.942 -3.246 -1.634 H36 9P2 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9P2 C20 O21 SING N N 1
9P2 C20 O19 SING N N 2
9P2 O21 C16 SING N N 3
9P2 O19 C17 SING N N 4
9P2 C16 C17 DOUB Y N 5
9P2 C16 C15 SING Y N 6
9P2 C17 C18 SING Y N 7
9P2 C15 C14 DOUB Y N 8
9P2 C18 C13 DOUB Y N 9
9P2 C14 C13 SING Y N 10
9P2 C13 C12 SING N N 11
9P2 C12 N11 SING N N 12
9P2 C40 C39 DOUB Y N 13
9P2 C40 C41 SING Y N 14
9P2 C34 C33 DOUB Y N 15
9P2 C34 C35 SING Y N 16
9P2 C33 C32 SING Y N 17
9P2 C39 C38 SING Y N 18
9P2 C41 C42 DOUB Y N 19
9P2 C38 C01 SING N N 20
9P2 C38 C43 DOUB Y N 21
9P2 N02 C01 DOUB Y N 22
9P2 N02 C03 SING Y N 23
9P2 N11 C22 SING N N 24
9P2 N11 C10 SING N N 25
9P2 C31 C30 DOUB Y N 26
9P2 C31 C23 SING Y N 27
9P2 C35 C36 DOUB Y N 28
9P2 C01 N05 SING Y N 29
9P2 C32 C03 SING N N 30
9P2 C32 C37 DOUB Y N 31
9P2 C03 C04 DOUB Y N 32
9P2 C42 C43 SING Y N 33
9P2 C30 C29 SING Y N 34
9P2 N05 C04 SING Y N 35
9P2 N05 C06 SING N N 36
9P2 C22 C23 SING N N 37
9P2 C04 C10 SING N N 38
9P2 C06 C07 SING N N 39
9P2 C23 C24 DOUB Y N 40
9P2 C36 C37 SING Y N 41
9P2 C29 O28 SING N N 42
9P2 C29 C25 DOUB Y N 43
9P2 C24 C25 SING Y N 44
9P2 O28 C27 SING N N 45
9P2 C07 C08 SING N N 46
9P2 C25 O26 SING N N 47
9P2 C08 C09 SING N N 48
9P2 C27 O26 SING N N 49
9P2 C15 H1 SING N N 50
9P2 C18 H2 SING N N 51
9P2 C20 H3 SING N N 52
9P2 C20 H4 SING N N 53
9P2 C06 H5 SING N N 54
9P2 C06 H6 SING N N 55
9P2 C07 H7 SING N N 56
9P2 C07 H8 SING N N 57
9P2 C08 H9 SING N N 58
9P2 C08 H10 SING N N 59
9P2 C09 H11 SING N N 60
9P2 C09 H12 SING N N 61
9P2 C09 H13 SING N N 62
9P2 C10 H14 SING N N 63
9P2 C10 H15 SING N N 64
9P2 C12 H17 SING N N 65
9P2 C12 H18 SING N N 66
9P2 C14 H19 SING N N 67
9P2 C22 H20 SING N N 68
9P2 C22 H21 SING N N 69
9P2 C24 H22 SING N N 70
9P2 C27 H23 SING N N 71
9P2 C27 H24 SING N N 72
9P2 C30 H25 SING N N 73
9P2 C31 H26 SING N N 74
9P2 C33 H27 SING N N 75
9P2 C34 H28 SING N N 76
9P2 C35 H29 SING N N 77
9P2 C36 H30 SING N N 78
9P2 C37 H31 SING N N 79
9P2 C39 H32 SING N N 80
9P2 C40 H33 SING N N 81
9P2 C41 H34 SING N N 82
9P2 C42 H35 SING N N 83
9P2 C43 H36 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9P2 InChI InChI 1.03 InChI=1S/C36H35N3O4/c1-2-3-18-39-30(35(28-10-6-4-7-11-28)37-36(39)29-12-8-5-9-13-29)23-38(21-26-14-16-31-33(19-26)42-24-40-31)22-27-15-17-32-34(20-27)43-25-41-32/h4-17,19-20H,2-3,18,21-25H2,1H3
9P2 InChIKey InChI 1.03 ITACCRHKSPSKKL-UHFFFAOYSA-N
9P2 SMILES_CANONICAL CACTVS 3.385 CCCCn1c(CN(Cc2ccc3OCOc3c2)Cc4ccc5OCOc5c4)c(nc1c6ccccc6)c7ccccc7
9P2 SMILES CACTVS 3.385 CCCCn1c(CN(Cc2ccc3OCOc3c2)Cc4ccc5OCOc5c4)c(nc1c6ccccc6)c7ccccc7
9P2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCCn1c(c(nc1c2ccccc2)c3ccccc3)CN(Cc4ccc5c(c4)OCO5)Cc6ccc7c(c6)OCO7
9P2 SMILES "OpenEye OEToolkits" 2.0.6 CCCCn1c(c(nc1c2ccccc2)c3ccccc3)CN(Cc4ccc5c(c4)OCO5)Cc6ccc7c(c6)OCO7
#
_pdbx_chem_comp_identifier.comp_id 9P2
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9P2 'Create component' 2017-06-19 EBI
9P2 'Initial release' 2018-01-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9P2 C15 C 15.046 -2.073 1
9P2 C16 C 16.345 -1.323 2
9P2 C17 C 16.345 0.177 3
9P2 C18 C 15.046 0.927 4
9P2 C20 C 18.639 -0.573 5
9P2 C01 C 7.475 -2.578 6
9P2 N02 N 8.225 -3.877 7
9P2 C03 C 9.693 -3.565 8
9P2 C04 C 9.849 -2.073 9
9P2 N05 N 8.479 -1.463 10
9P2 C06 C 8.167 0.004 11
9P2 C07 C 6.740 0.468 12
9P2 C08 C 6.429 1.935 13
9P2 C09 C 5.002 2.399 14
9P2 C10 C 11.149 -1.323 15
9P2 N11 N 11.149 0.177 16
9P2 C12 C 12.447 0.927 17
9P2 C13 C 13.746 0.177 18
9P2 C14 C 13.746 -1.323 19
9P2 O19 O 17.764 0.634 20
9P2 O21 O 17.764 -1.780 21
9P2 C22 C 9.849 0.927 22
9P2 C23 C 9.849 2.427 23
9P2 C24 C 8.550 3.177 24
9P2 C25 C 8.550 4.677 25
9P2 O26 O 7.445 5.678 26
9P2 C27 C 8.053 7.039 27
9P2 O28 O 9.536 6.885 28
9P2 C29 C 9.849 5.427 29
9P2 C30 C 11.149 4.677 30
9P2 C31 C 11.149 3.177 31
9P2 C32 C 10.807 -4.568 32
9P2 C33 C 12.234 -4.105 33
9P2 C34 C 13.349 -5.109 34
9P2 C35 C 13.037 -6.576 35
9P2 C36 C 11.610 -7.039 36
9P2 C37 C 10.495 -6.036 37
9P2 C38 C 5.984 -2.421 38
9P2 C39 C 5.102 -3.634 39
9P2 C40 C 3.610 -3.477 40
9P2 C41 C 3.000 -2.107 41
9P2 C42 C 3.882 -0.894 42
9P2 C43 C 5.373 -1.050 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9P2 C20 O21 SINGLE NONE 1
9P2 C20 O19 SINGLE NONE 2
9P2 O21 C16 SINGLE NONE 3
9P2 O19 C17 SINGLE NONE 4
9P2 C16 C17 SINGLE NONE 5
9P2 C16 C15 DOUBLE NONE 6
9P2 C17 C18 DOUBLE NONE 7
9P2 C15 C14 SINGLE NONE 8
9P2 C18 C13 SINGLE NONE 9
9P2 C14 C13 DOUBLE NONE 10
9P2 C13 C12 SINGLE NONE 11
9P2 C12 N11 SINGLE NONE 12
9P2 C40 C39 DOUBLE NONE 13
9P2 C40 C41 SINGLE NONE 14
9P2 C34 C33 DOUBLE NONE 15
9P2 C34 C35 SINGLE NONE 16
9P2 C33 C32 SINGLE NONE 17
9P2 C39 C38 SINGLE NONE 18
9P2 C41 C42 DOUBLE NONE 19
9P2 C38 C01 SINGLE NONE 20
9P2 C38 C43 DOUBLE NONE 21
9P2 N02 C01 DOUBLE NONE 22
9P2 N02 C03 SINGLE NONE 23
9P2 N11 C22 SINGLE NONE 24
9P2 N11 C10 SINGLE NONE 25
9P2 C31 C30 DOUBLE NONE 26
9P2 C31 C23 SINGLE NONE 27
9P2 C35 C36 DOUBLE NONE 28
9P2 C01 N05 SINGLE NONE 29
9P2 C32 C03 SINGLE NONE 30
9P2 C32 C37 DOUBLE NONE 31
9P2 C03 C04 DOUBLE NONE 32
9P2 C42 C43 SINGLE NONE 33
9P2 C30 C29 SINGLE NONE 34
9P2 N05 C04 SINGLE NONE 35
9P2 N05 C06 SINGLE NONE 36
9P2 C22 C23 SINGLE NONE 37
9P2 C04 C10 SINGLE NONE 38
9P2 C06 C07 SINGLE NONE 39
9P2 C23 C24 DOUBLE NONE 40
9P2 C36 C37 SINGLE NONE 41
9P2 C29 O28 SINGLE NONE 42
9P2 C29 C25 DOUBLE NONE 43
9P2 C24 C25 SINGLE NONE 44
9P2 O28 C27 SINGLE NONE 45
9P2 C07 C08 SINGLE NONE 46
9P2 C25 O26 SINGLE NONE 47
9P2 C08 C09 SINGLE NONE 48
9P2 C27 O26 SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9P2 MurckoScaffold S1 scaffold 'c1ccc(-c2nc(-c3ccccc3)c(CN(Cc3ccc4c(c3)OCO4)Cc3ccc4c(c3)OCO4)[nH]2)cc1' InChI=1S/C32H27N3O4/c1-3-7-24(8-4-1)31-26(33-32(34-31)25-9-5-2-6-10-25)19-35(17-22-11-13-27-29(15-22)38-20-36-27)18-23-12-14-28-30(16-23)39-21-37-28/h1-16H,17-21H2,(H,33,34) ASKBJWSLUVKKPV-UHFFFAOYSA-N
9P2 imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
9P2 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9P2 C15 S1 1
9P2 C16 S1 1
9P2 C17 S1 1
9P2 C18 S1 1
9P2 C20 S1 1
9P2 C01 S1 1
9P2 N02 S1 1
9P2 C03 S1 1
9P2 C04 S1 1
9P2 N05 S1 1
9P2 C10 S1 1
9P2 N11 S1 1
9P2 C12 S1 1
9P2 C13 S1 1
9P2 C14 S1 1
9P2 O19 S1 1
9P2 O21 S1 1
9P2 C22 S1 1
9P2 C23 S1 1
9P2 C24 S1 1
9P2 C25 S1 1
9P2 O26 S1 1
9P2 C27 S1 1
9P2 O28 S1 1
9P2 C29 S1 1
9P2 C30 S1 1
9P2 C31 S1 1
9P2 C32 S1 1
9P2 C33 S1 1
9P2 C34 S1 1
9P2 C35 S1 1
9P2 C36 S1 1
9P2 C37 S1 1
9P2 C38 S1 1
9P2 C39 S1 1
9P2 C40 S1 1
9P2 C41 S1 1
9P2 C42 S1 1
9P2 C43 S1 1
9P2 C03 F1 1
9P2 C04 F1 1
9P2 N05 F1 1
9P2 C01 F1 1
9P2 N02 F1 1
9P2 C15 F2 1
9P2 C16 F2 1
9P2 C17 F2 1
9P2 C18 F2 1
9P2 C13 F2 1
9P2 C14 F2 1
9P2 C23 F2 2
9P2 C31 F2 2
9P2 C30 F2 2
9P2 C29 F2 2
9P2 C25 F2 2
9P2 C24 F2 2
9P2 C32 F2 3
9P2 C33 F2 3
9P2 C34 F2 3
9P2 C35 F2 3
9P2 C36 F2 3
9P2 C37 F2 3
9P2 C38 F2 4
9P2 C39 F2 4
9P2 C40 F2 4
9P2 C41 F2 4
9P2 C42 F2 4
9P2 C43 F2 4
#
_pdbe_chem_comp_rdkit_properties.comp_id 9P2
_pdbe_chem_comp_rdkit_properties.exactmw 573.263
_pdbe_chem_comp_rdkit_properties.amw 573.693
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 78
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 300.959
_pdbe_chem_comp_rdkit_properties.tpsa 57.980
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.903
_pdbe_chem_comp_rdkit_properties.CrippenMR 160.206
_pdbe_chem_comp_rdkit_properties.chi0v 20.975
_pdbe_chem_comp_rdkit_properties.chi1v 11.672
_pdbe_chem_comp_rdkit_properties.chi2v 5.299
_pdbe_chem_comp_rdkit_properties.chi3v 5.299
_pdbe_chem_comp_rdkit_properties.chi4v 3.565
_pdbe_chem_comp_rdkit_properties.chi0n 55.975
_pdbe_chem_comp_rdkit_properties.chi1n 29.172
_pdbe_chem_comp_rdkit_properties.chi2n 5.299
_pdbe_chem_comp_rdkit_properties.chi3n 5.299
_pdbe_chem_comp_rdkit_properties.chi4n 3.565
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.750
_pdbe_chem_comp_rdkit_properties.kappa1 8.451
_pdbe_chem_comp_rdkit_properties.kappa2 12.235
_pdbe_chem_comp_rdkit_properties.kappa3 5.811
_pdbe_chem_comp_rdkit_properties.Phi 2.405
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9P2 UniChem ChEMBL CHEMBL4303272
9P2 UniChem PDBe 9P2
9P2 UniChem 'Guide to Pharmacology' 9746
9P2 UniChem ZINC ZINC000043202267
9P2 UniChem fdasrs H94WRL71FP
9P2 UniChem SureChEMBL SCHEMBL4767016
9P2 UniChem MedChemExpress HY-110060
9P2 UniChem 'Probes And Drugs' PD038594
9P2 UniChem PubChem 10210160
9P2 UniChem 'PubChem TPHARMA' 15208285
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9P2 C15 3.908 -1.266 2.593 ETKDGv3 1
9P2 C16 4.111 -2.567 2.388 ETKDGv3 2
9P2 C17 3.880 -3.187 1.129 ETKDGv3 3
9P2 C18 3.451 -2.511 0.064 ETKDGv3 4
9P2 C20 4.575 -4.798 2.600 ETKDGv3 5
9P2 C01 -2.990 0.189 -0.253 ETKDGv3 6
9P2 N02 -2.586 -0.339 0.856 ETKDGv3 7
9P2 C03 -1.289 -0.855 0.583 ETKDGv3 8
9P2 C04 -0.958 -0.617 -0.684 ETKDGv3 9
9P2 N05 -2.033 0.081 -1.315 ETKDGv3 10
9P2 C06 -2.350 -0.000 -2.744 ETKDGv3 11
9P2 C07 -2.806 -1.419 -3.112 ETKDGv3 12
9P2 C08 -3.258 -1.532 -4.575 ETKDGv3 13
9P2 C09 -2.095 -1.433 -5.562 ETKDGv3 14
9P2 C10 0.411 -0.795 -1.293 ETKDGv3 15
9P2 N11 1.351 0.198 -0.731 ETKDGv3 16
9P2 C12 2.755 -0.219 -0.937 ETKDGv3 17
9P2 C13 3.217 -1.044 0.229 ETKDGv3 18
9P2 C14 3.425 -0.460 1.438 ETKDGv3 19
9P2 O19 4.160 -4.534 1.248 ETKDGv3 20
9P2 O21 4.534 -3.531 3.280 ETKDGv3 21
9P2 C22 1.110 1.552 -1.275 ETKDGv3 22
9P2 C23 1.467 2.571 -0.230 ETKDGv3 23
9P2 C24 2.564 3.349 -0.359 ETKDGv3 24
9P2 C25 2.888 4.280 0.732 ETKDGv3 25
9P2 O26 3.950 5.161 0.815 ETKDGv3 26
9P2 C27 3.847 5.849 2.066 ETKDGv3 27
9P2 O28 2.673 5.304 2.675 ETKDGv3 28
9P2 C29 2.150 4.362 1.808 ETKDGv3 29
9P2 C30 0.951 3.530 1.987 ETKDGv3 30
9P2 C31 0.625 2.672 1.006 ETKDGv3 31
9P2 C32 -0.448 -1.474 1.622 ETKDGv3 32
9P2 C33 -0.235 -0.761 2.904 ETKDGv3 33
9P2 C34 0.456 -1.343 3.892 ETKDGv3 34
9P2 C35 0.995 -2.706 3.714 ETKDGv3 35
9P2 C36 0.801 -3.358 2.561 ETKDGv3 36
9P2 C37 0.045 -2.716 1.466 ETKDGv3 37
9P2 C38 -4.294 0.869 -0.362 ETKDGv3 38
9P2 C39 -5.477 0.305 0.335 ETKDGv3 39
9P2 C40 -6.661 0.928 0.267 ETKDGv3 40
9P2 C41 -6.792 2.187 -0.494 ETKDGv3 41
9P2 C42 -5.726 2.710 -1.110 ETKDGv3 42
9P2 C43 -4.417 2.028 -1.034 ETKDGv3 43
9P2 H1 4.077 -0.817 3.562 ETKDGv3 44
9P2 H2 3.277 -3.012 -0.879 ETKDGv3 45
9P2 H3 5.608 -5.203 2.610 ETKDGv3 46
9P2 H4 3.872 -5.510 3.081 ETKDGv3 47
9P2 H5 -1.456 0.287 -3.334 ETKDGv3 48
9P2 H6 -3.151 0.722 -3.001 ETKDGv3 49
9P2 H7 -3.664 -1.695 -2.461 ETKDGv3 50
9P2 H8 -1.986 -2.143 -2.914 ETKDGv3 51
9P2 H9 -3.749 -2.520 -4.715 ETKDGv3 52
9P2 H10 -4.011 -0.747 -4.806 ETKDGv3 53
9P2 H11 -1.309 -2.177 -5.311 ETKDGv3 54
9P2 H12 -2.463 -1.640 -6.588 ETKDGv3 55
9P2 H13 -1.657 -0.414 -5.552 ETKDGv3 56
9P2 H14 0.757 -1.827 -1.075 ETKDGv3 57
9P2 H15 0.369 -0.709 -2.400 ETKDGv3 58
9P2 H17 3.437 0.658 -1.008 ETKDGv3 59
9P2 H18 2.877 -0.778 -1.893 ETKDGv3 60
9P2 H19 3.251 0.600 1.575 ETKDGv3 61
9P2 H20 1.673 1.715 -2.224 ETKDGv3 62
9P2 H21 0.040 1.711 -1.526 ETKDGv3 63
9P2 H22 3.205 3.288 -1.230 ETKDGv3 64
9P2 H23 4.739 5.640 2.694 ETKDGv3 65
9P2 H24 3.723 6.939 1.897 ETKDGv3 66
9P2 H25 0.350 3.607 2.884 ETKDGv3 67
9P2 H26 -0.252 2.045 1.113 ETKDGv3 68
9P2 H27 -0.632 0.237 3.042 ETKDGv3 69
9P2 H28 0.617 -0.818 4.824 ETKDGv3 70
9P2 H29 1.553 -3.174 4.515 ETKDGv3 71
9P2 H30 1.197 -4.356 2.428 ETKDGv3 72
9P2 H31 -0.141 -3.277 0.559 ETKDGv3 73
9P2 H32 -5.390 -0.618 0.893 ETKDGv3 74
9P2 H33 -7.523 0.512 0.771 ETKDGv3 75
9P2 H34 -7.750 2.687 -0.547 ETKDGv3 76
9P2 H35 -5.818 3.637 -1.663 ETKDGv3 77
9P2 H36 -3.558 2.491 -1.506 ETKDGv3 78
#