data_9RZ
#
_chem_comp.id 9RZ
_chem_comp.name
3-[(3~{S})-3-methoxypiperidin-1-yl]carbonyl-~{N}-methyl-~{N}-(4-morpholin-4-ylphenyl)-6-oxidanyl-1~{H}-indazole-5-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H31 N5 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-05
_chem_comp.pdbx_modified_date 2018-04-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 493.555
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9RZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5ODA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9RZ C1 C1 C 0 1 N N N N N N -0.831 34.351 22.629 1.235 -1.718 0.331 C1 9RZ 1
9RZ C7 C2 C 0 1 Y N N N N N -1.954 33.248 24.650 -0.476 -3.534 0.262 C7 9RZ 2
9RZ C9 C3 C 0 1 Y N N N N N -0.654 32.487 26.510 -2.801 -3.033 -0.055 C9 9RZ 3
9RZ C10 C4 C 0 1 Y N N N N N 0.583 32.950 25.866 -2.491 -1.658 -0.120 C10 9RZ 4
9RZ C11 C5 C 0 1 Y N N N N N 1.660 32.597 26.832 -3.790 -1.002 -0.326 C11 9RZ 5
9RZ C14 C6 C 0 1 N N N N N N 3.075 33.004 26.591 -4.038 0.445 -0.464 C14 9RZ 6
9RZ C16 C7 C 0 1 N N N N N N 5.062 33.435 25.354 -6.438 -0.020 -0.582 C16 9RZ 7
9RZ C19 C8 C 0 1 N N S N N N 4.718 30.638 24.860 -6.562 2.695 0.550 C19 9RZ 8
9RZ C20 C9 C 0 1 N N N N N N 6.043 31.326 24.571 -7.810 1.822 0.399 C20 9RZ 9
9RZ C21 C10 C 0 1 N N N N N N 6.220 32.474 25.533 -7.423 0.348 0.532 C21 9RZ 10
9RZ C24 C11 C 0 1 Y N N N N N 0.561 36.178 23.388 3.024 -0.287 -0.316 C24 9RZ 11
9RZ C27 C12 C 0 1 Y N N N N N 2.763 36.888 24.156 5.277 -0.767 0.350 C27 9RZ 12
9RZ C30 C13 C 0 1 N N N N N N -0.333 36.184 21.107 0.728 0.145 -1.155 C30 9RZ 13
9RZ C32 C14 C 0 1 N N N N N N 2.411 38.447 27.586 7.278 2.064 -0.867 C32 9RZ 14
9RZ C33 C15 C 0 1 N N N N N N 3.361 39.084 28.599 8.776 2.382 -0.861 C33 9RZ 15
9RZ C35 C16 C 0 1 N N N N N N 5.112 39.075 27.170 9.050 1.140 1.169 C35 9RZ 16
9RZ N2 N1 N 0 1 N N N N N N -0.235 35.525 22.415 1.670 -0.645 -0.359 N2 9RZ 17
9RZ O3 O1 O 0 1 N N N N N N -1.510 33.804 21.741 1.995 -2.315 1.069 O3 9RZ 18
9RZ C4 C17 C 0 1 Y N N N N N -0.710 33.689 23.973 -0.164 -2.163 0.196 C4 9RZ 19
9RZ C5 C18 C 0 1 Y N N N N N 0.551 33.524 24.603 -1.178 -1.227 0.005 C5 9RZ 20
9RZ C6 C19 C 0 1 Y N N N N N -1.883 32.650 25.894 -1.782 -3.961 0.137 C6 9RZ 21
9RZ O8 O2 O 0 1 N N N N N N -3.185 33.408 24.088 0.515 -4.443 0.443 O8 9RZ 22
9RZ N12 N2 N 0 1 Y N N N N N 1.121 32.059 27.921 -4.688 -1.962 -0.362 N12 9RZ 23
9RZ N13 N3 N 0 1 Y N N N N N -0.269 31.993 27.703 -4.159 -3.122 -0.212 N13 9RZ 24
9RZ O15 O3 O 0 1 N N N N N N 3.478 33.836 27.374 -3.102 1.220 -0.516 O15 9RZ 25
9RZ N17 N4 N 0 1 N N N N N N 3.851 32.664 25.622 -5.301 0.909 -0.534 N17 9RZ 26
9RZ C18 C20 C 0 1 N N N N N N 3.538 31.572 24.765 -5.567 2.354 -0.564 C18 9RZ 27
9RZ O22 O4 O 0 1 N N N N N N 4.371 29.680 23.880 -6.929 4.073 0.457 O22 9RZ 28
9RZ C23 C21 C 0 1 N N N N N N 5.367 28.699 23.660 -6.088 4.950 1.209 C23 9RZ 29
9RZ C25 C22 C 0 1 Y N N N N N 0.013 36.705 24.568 3.444 0.908 -0.886 C25 9RZ 30
9RZ C26 C23 C 0 1 Y N N N N N 2.215 37.425 25.340 5.699 0.422 -0.231 C26 9RZ 31
9RZ C28 C24 C 0 1 Y N N N N N 0.822 37.311 25.536 4.778 1.261 -0.844 C28 9RZ 32
9RZ C29 C25 C 0 1 Y N N N N N 1.943 36.280 23.183 3.944 -1.123 0.302 C29 9RZ 33
9RZ N31 N5 N 0 1 N N N N N N 3.045 38.045 26.331 7.053 0.775 -0.198 N31 9RZ 34
9RZ O34 O5 O 0 1 N N N N N N 4.675 38.614 28.428 9.252 2.381 0.488 O34 9RZ 35
9RZ C36 C26 C 0 1 N N N N N N 4.474 38.208 26.090 7.555 0.809 1.183 C36 9RZ 36
9RZ H1 H1 H 0 1 N N N N N N 5.147 34.271 26.063 -6.083 -1.040 -0.434 H1 9RZ 37
9RZ H2 H2 H 0 1 N N N N N N 5.046 33.826 24.326 -6.935 0.060 -1.549 H2 9RZ 38
9RZ H3 H3 H 0 1 N N N N N N 4.751 30.184 25.861 -6.101 2.506 1.520 H3 9RZ 39
9RZ H4 H4 H 0 1 N N N N N N 6.867 30.608 24.698 -8.530 2.080 1.176 H4 9RZ 40
9RZ H5 H5 H 0 1 N N N N N N 6.044 31.706 23.539 -8.257 1.994 -0.580 H5 9RZ 41
9RZ H7 H6 H 0 1 N N N N N N 6.231 32.095 26.565 -8.316 -0.272 0.448 H7 9RZ 42
9RZ H6 H7 H 0 1 N N N N N N 7.168 32.992 25.323 -6.954 0.181 1.502 H6 9RZ 43
9RZ H8 H8 H 0 1 N N N N N N 3.829 36.944 23.992 5.994 -1.420 0.826 H8 9RZ 44
9RZ H10 H9 H 0 1 N N N N N N 0.221 37.134 21.132 0.383 0.998 -0.569 H10 9RZ 45
9RZ H11 H10 H 0 1 N N N N N N 0.096 35.530 20.334 1.224 0.502 -2.058 H11 9RZ 46
9RZ H9 H11 H 0 1 N N N N N N -1.390 36.382 20.875 -0.125 -0.475 -1.431 H9 9RZ 47
9RZ H13 H12 H 0 1 N N N N N N 1.619 39.174 27.354 6.737 2.848 -0.337 H13 9RZ 48
9RZ H12 H13 H 0 1 N N N N N N 1.965 37.554 28.047 6.922 2.008 -1.896 H12 9RZ 49
9RZ H14 H14 H 0 1 N N N N N N 3.350 40.176 28.464 9.310 1.626 -1.436 H14 9RZ 50
9RZ H15 H15 H 0 1 N N N N N N 3.021 38.836 29.615 8.941 3.363 -1.305 H15 9RZ 51
9RZ H17 H16 H 0 1 N N N N N N 6.208 39.000 27.107 9.592 0.348 0.652 H17 9RZ 52
9RZ H16 H17 H 0 1 N N N N N N 4.808 40.123 27.032 9.415 1.223 2.193 H16 9RZ 53
9RZ H18 H18 H 0 1 N N N N N N 1.461 33.837 24.113 -0.943 -0.174 -0.046 H18 9RZ 54
9RZ H19 H19 H 0 1 N N N N N N -2.784 32.311 26.384 -2.013 -5.015 0.188 H19 9RZ 55
9RZ H20 H20 H 0 1 N N N N N N -3.089 33.587 23.160 0.906 -4.768 -0.380 H20 9RZ 56
9RZ HN13 H21 H 0 0 N N N N N N -0.910 31.615 28.371 -4.657 -3.954 -0.209 HN13 9RZ 57
9RZ H23 H22 H 0 1 N N N N N N 3.405 31.921 23.730 -5.993 2.627 -1.530 H23 9RZ 58
9RZ H22 H23 H 0 1 N N N N N N 2.620 31.068 25.103 -4.638 2.900 -0.404 H22 9RZ 59
9RZ H25 H24 H 0 1 N N N N N N 5.024 27.994 22.888 -6.432 5.977 1.086 H25 9RZ 60
9RZ H26 H25 H 0 1 N N N N N N 6.294 29.187 23.325 -6.128 4.677 2.263 H26 9RZ 61
9RZ H24 H26 H 0 1 N N N N N N 5.557 28.153 24.596 -5.062 4.866 0.850 H24 9RZ 62
9RZ H27 H27 H 0 1 N N N N N N -1.053 36.642 24.732 2.727 1.561 -1.362 H27 9RZ 63
9RZ H28 H28 H 0 1 N N N N N N 0.376 37.695 26.442 5.105 2.190 -1.288 H28 9RZ 64
9RZ H29 H29 H 0 1 N N N N N N 2.382 35.891 22.276 3.617 -2.052 0.745 H29 9RZ 65
9RZ H30 H30 H 0 1 N N N N N N 4.955 37.219 26.092 7.401 -0.163 1.651 H30 9RZ 66
9RZ H31 H31 H 0 1 N N N N N N 4.622 38.686 25.110 7.019 1.574 1.746 H31 9RZ 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9RZ C30 N2 SING N N 1
9RZ O3 C1 DOUB N N 2
9RZ N2 C1 SING N N 3
9RZ N2 C24 SING N N 4
9RZ C1 C4 SING N N 5
9RZ C29 C24 DOUB Y N 6
9RZ C29 C27 SING Y N 7
9RZ C24 C25 SING Y N 8
9RZ C23 O22 SING N N 9
9RZ O22 C19 SING N N 10
9RZ C4 C5 DOUB Y N 11
9RZ C4 C7 SING Y N 12
9RZ O8 C7 SING N N 13
9RZ C27 C26 DOUB Y N 14
9RZ C25 C28 DOUB Y N 15
9RZ C20 C19 SING N N 16
9RZ C20 C21 SING N N 17
9RZ C5 C10 SING Y N 18
9RZ C7 C6 DOUB Y N 19
9RZ C18 C19 SING N N 20
9RZ C18 N17 SING N N 21
9RZ C26 C28 SING Y N 22
9RZ C26 N31 SING N N 23
9RZ C16 C21 SING N N 24
9RZ C16 N17 SING N N 25
9RZ N17 C14 SING N N 26
9RZ C10 C9 DOUB Y N 27
9RZ C10 C11 SING Y N 28
9RZ C6 C9 SING Y N 29
9RZ C36 N31 SING N N 30
9RZ C36 C35 SING N N 31
9RZ N31 C32 SING N N 32
9RZ C9 N13 SING Y N 33
9RZ C14 C11 SING N N 34
9RZ C14 O15 DOUB N N 35
9RZ C11 N12 DOUB Y N 36
9RZ C35 O34 SING N N 37
9RZ C32 C33 SING N N 38
9RZ N13 N12 SING Y N 39
9RZ O34 C33 SING N N 40
9RZ C16 H1 SING N N 41
9RZ C16 H2 SING N N 42
9RZ C19 H3 SING N N 43
9RZ C20 H4 SING N N 44
9RZ C20 H5 SING N N 45
9RZ C21 H7 SING N N 46
9RZ C21 H6 SING N N 47
9RZ C27 H8 SING N N 48
9RZ C30 H10 SING N N 49
9RZ C30 H11 SING N N 50
9RZ C30 H9 SING N N 51
9RZ C32 H13 SING N N 52
9RZ C32 H12 SING N N 53
9RZ C33 H14 SING N N 54
9RZ C33 H15 SING N N 55
9RZ C35 H17 SING N N 56
9RZ C35 H16 SING N N 57
9RZ C5 H18 SING N N 58
9RZ C6 H19 SING N N 59
9RZ O8 H20 SING N N 60
9RZ N13 HN13 SING N N 61
9RZ C18 H23 SING N N 62
9RZ C18 H22 SING N N 63
9RZ C23 H25 SING N N 64
9RZ C23 H26 SING N N 65
9RZ C23 H24 SING N N 66
9RZ C25 H27 SING N N 67
9RZ C28 H28 SING N N 68
9RZ C29 H29 SING N N 69
9RZ C36 H30 SING N N 70
9RZ C36 H31 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9RZ InChI InChI 1.03 InChI=1S/C26H31N5O5/c1-29(17-5-7-18(8-6-17)30-10-12-36-13-11-30)25(33)21-14-20-22(15-23(21)32)27-28-24(20)26(34)31-9-3-4-19(16-31)35-2/h5-8,14-15,19,32H,3-4,9-13,16H2,1-2H3,(H,27,28)/t19-/m0/s1
9RZ InChIKey InChI 1.03 RSPZSUZMTGTRAT-IBGZPJMESA-N
9RZ SMILES_CANONICAL CACTVS 3.385 CO[C@H]1CCCN(C1)C(=O)c2n[nH]c3cc(O)c(cc23)C(=O)N(C)c4ccc(cc4)N5CCOCC5
9RZ SMILES CACTVS 3.385 CO[CH]1CCCN(C1)C(=O)c2n[nH]c3cc(O)c(cc23)C(=O)N(C)c4ccc(cc4)N5CCOCC5
9RZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CN(c1ccc(cc1)N2CCOCC2)C(=O)c3cc4c(cc3O)[nH]nc4C(=O)N5CCC[C@@H](C5)OC
9RZ SMILES "OpenEye OEToolkits" 2.0.6 CN(c1ccc(cc1)N2CCOCC2)C(=O)c3cc4c(cc3O)[nH]nc4C(=O)N5CCCC(C5)OC
#
_pdbx_chem_comp_identifier.comp_id 9RZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
3-[(3~{S})-3-methoxypiperidin-1-yl]carbonyl-~{N}-methyl-~{N}-(4-morpholin-4-ylphenyl)-6-oxidanyl-1~{H}-indazole-5-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9RZ 'Create component' 2017-07-05 EBI
9RZ 'Initial release' 2018-04-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9RZ C1 C 10.794 -1.410 1
9RZ C7 C 12.093 -3.660 2
9RZ C9 C 14.691 -3.660 3
9RZ C10 C 14.691 -2.160 4
9RZ C11 C 16.111 -1.703 5
9RZ C14 C 16.577 -0.277 6
9RZ C16 C 18.510 1.458 7
9RZ C19 C 20.514 -0.775 8
9RZ C20 C 20.980 0.651 9
9RZ C21 C 19.978 1.767 10
9RZ C24 C 9.495 0.840 11
9RZ C27 C 8.196 3.090 12
9RZ C30 C 12.093 0.840 13
9RZ C32 C 4.299 2.340 14
9RZ C33 C 3.000 3.090 15
9RZ C35 C 4.299 5.340 16
9RZ N2 N 10.794 0.090 17
9RZ O3 O 9.495 -2.160 18
9RZ C4 C 12.093 -2.160 19
9RZ C5 C 13.392 -1.410 20
9RZ C6 C 13.392 -4.410 21
9RZ O8 O 10.794 -4.410 22
9RZ N12 N 16.986 -2.910 23
9RZ N13 N 16.111 -4.117 24
9RZ O15 O 15.575 0.839 25
9RZ N17 N 18.044 0.032 26
9RZ C18 C 19.046 -1.084 27
9RZ O22 O 21.516 -1.891 28
9RZ C23 C 22.983 -1.582 29
9RZ C25 C 8.196 0.090 30
9RZ C26 C 6.897 2.340 31
9RZ C28 C 6.897 0.840 32
9RZ C29 C 9.495 2.340 33
9RZ N31 N 5.598 3.090 34
9RZ O34 O 3.000 4.590 35
9RZ C36 C 5.598 4.590 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9RZ C30 N2 SINGLE NONE 1
9RZ O3 C1 DOUBLE NONE 2
9RZ N2 C1 SINGLE NONE 3
9RZ N2 C24 SINGLE NONE 4
9RZ C1 C4 SINGLE NONE 5
9RZ C29 C24 SINGLE NONE 6
9RZ C29 C27 DOUBLE NONE 7
9RZ C24 C25 DOUBLE NONE 8
9RZ C23 O22 SINGLE NONE 9
9RZ C19 O22 SINGLE BEGINDASH 10
9RZ C4 C5 SINGLE NONE 11
9RZ C4 C7 DOUBLE NONE 12
9RZ O8 C7 SINGLE NONE 13
9RZ C27 C26 SINGLE NONE 14
9RZ C25 C28 SINGLE NONE 15
9RZ C20 C19 SINGLE NONE 16
9RZ C20 C21 SINGLE NONE 17
9RZ C5 C10 DOUBLE NONE 18
9RZ C7 C6 SINGLE NONE 19
9RZ C18 C19 SINGLE NONE 20
9RZ C18 N17 SINGLE NONE 21
9RZ C26 C28 DOUBLE NONE 22
9RZ C26 N31 SINGLE NONE 23
9RZ C16 C21 SINGLE NONE 24
9RZ C16 N17 SINGLE NONE 25
9RZ N17 C14 SINGLE NONE 26
9RZ C10 C9 SINGLE NONE 27
9RZ C10 C11 SINGLE NONE 28
9RZ C6 C9 DOUBLE NONE 29
9RZ C36 N31 SINGLE NONE 30
9RZ C36 C35 SINGLE NONE 31
9RZ N31 C32 SINGLE NONE 32
9RZ C9 N13 SINGLE NONE 33
9RZ C14 C11 SINGLE NONE 34
9RZ C14 O15 DOUBLE NONE 35
9RZ C11 N12 DOUBLE NONE 36
9RZ C35 O34 SINGLE NONE 37
9RZ C32 C33 SINGLE NONE 38
9RZ N13 N12 SINGLE NONE 39
9RZ O34 C33 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9RZ MurckoScaffold S1 scaffold 'O=C(Nc1ccc(N2CCOCC2)cc1)c1ccc2[nH]nc(C(=O)N3CCCCC3)c2c1' InChI=1S/C24H27N5O3/c30-23(25-18-5-7-19(8-6-18)28-12-14-32-15-13-28)17-4-9-21-20(16-17)22(27-26-21)24(31)29-10-2-1-3-11-29/h4-9,16H,1-3,10-15H2,(H,25,30)(H,26,27) WPTXNSXZNXMLEI-UHFFFAOYSA-N
9RZ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9RZ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9RZ pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
9RZ Z752989138 F4 fragment CCN(CCO)c1ccc(N)cc1 InChI=1S/C10H16N2O/c1-2-12(7-8-13)10-5-3-9(11)4-6-10/h3-6,13H,2,7-8,11H2,1H3 WFXLRLQSHRNHCE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9RZ C1 S1 1
9RZ C7 S1 1
9RZ C9 S1 1
9RZ C10 S1 1
9RZ C11 S1 1
9RZ C14 S1 1
9RZ C16 S1 1
9RZ C19 S1 1
9RZ C20 S1 1
9RZ C21 S1 1
9RZ C24 S1 1
9RZ C27 S1 1
9RZ C32 S1 1
9RZ C33 S1 1
9RZ C35 S1 1
9RZ N2 S1 1
9RZ O3 S1 1
9RZ C4 S1 1
9RZ C5 S1 1
9RZ C6 S1 1
9RZ N12 S1 1
9RZ N13 S1 1
9RZ O15 S1 1
9RZ N17 S1 1
9RZ C18 S1 1
9RZ C25 S1 1
9RZ C26 S1 1
9RZ C28 S1 1
9RZ C29 S1 1
9RZ N31 S1 1
9RZ O34 S1 1
9RZ C36 S1 1
9RZ N2 F1 1
9RZ C1 F1 1
9RZ O3 F1 1
9RZ C4 F1 1
9RZ N17 F1 2
9RZ C14 F1 2
9RZ O15 F1 2
9RZ C11 F1 2
9RZ C7 F2 1
9RZ C4 F2 1
9RZ C5 F2 1
9RZ C10 F2 1
9RZ C9 F2 1
9RZ C6 F2 1
9RZ C24 F2 2
9RZ C29 F2 2
9RZ C27 F2 2
9RZ C26 F2 2
9RZ C28 F2 2
9RZ C25 F2 2
9RZ C9 F3 1
9RZ C10 F3 1
9RZ C11 F3 1
9RZ N12 F3 1
9RZ N13 F3 1
9RZ C33 F4 1
9RZ C32 F4 1
9RZ N31 F4 1
9RZ C36 F4 1
9RZ C35 F4 1
9RZ O34 F4 1
9RZ C26 F4 1
9RZ C27 F4 1
9RZ C29 F4 1
9RZ C24 F4 1
9RZ N2 F4 1
9RZ C25 F4 1
9RZ C28 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9RZ
_pdbe_chem_comp_rdkit_properties.exactmw 493.233
_pdbe_chem_comp_rdkit_properties.amw 493.564
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.423
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.623
_pdbe_chem_comp_rdkit_properties.tpsa 111.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.871
_pdbe_chem_comp_rdkit_properties.CrippenMR 130.905
_pdbe_chem_comp_rdkit_properties.chi0v 17.277
_pdbe_chem_comp_rdkit_properties.chi1v 9.339
_pdbe_chem_comp_rdkit_properties.chi2v 4.377
_pdbe_chem_comp_rdkit_properties.chi3v 4.377
_pdbe_chem_comp_rdkit_properties.chi4v 2.762
_pdbe_chem_comp_rdkit_properties.chi0n 48.277
_pdbe_chem_comp_rdkit_properties.chi1n 24.694
_pdbe_chem_comp_rdkit_properties.chi2n 4.377
_pdbe_chem_comp_rdkit_properties.chi3n 4.377
_pdbe_chem_comp_rdkit_properties.chi4n 2.762
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.630
_pdbe_chem_comp_rdkit_properties.kappa1 7.018
_pdbe_chem_comp_rdkit_properties.kappa2 10.158
_pdbe_chem_comp_rdkit_properties.kappa3 4.612
_pdbe_chem_comp_rdkit_properties.Phi 1.980
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9RZ UniChem PDBe 9RZ
9RZ UniChem PubChem 135567255
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9RZ C1 -1.418 -2.543 1.053 ETKDGv3 1
9RZ C7 0.593 -3.564 2.127 ETKDGv3 2
9RZ C9 2.736 -2.452 2.040 ETKDGv3 3
9RZ C10 2.153 -1.414 1.247 ETKDGv3 4
9RZ C11 3.272 -0.505 0.976 ETKDGv3 5
9RZ C14 3.218 0.763 0.224 ETKDGv3 6
9RZ C16 4.461 2.909 -0.162 ETKDGv3 7
9RZ C19 6.852 1.196 -0.493 ETKDGv3 8
9RZ C20 6.945 2.730 -0.589 ETKDGv3 9
9RZ C21 5.852 3.401 0.252 ETKDGv3 10
9RZ C24 -3.088 -1.437 -0.428 ETKDGv3 11
9RZ C27 -4.487 0.428 0.336 ETKDGv3 12
9RZ C30 -1.201 -2.777 -1.441 ETKDGv3 13
9RZ C32 -7.977 0.186 -1.006 ETKDGv3 14
9RZ C33 -9.121 1.180 -0.800 ETKDGv3 15
9RZ C35 -7.795 2.987 -0.197 ETKDGv3 16
9RZ N2 -1.870 -2.196 -0.270 ETKDGv3 17
9RZ O3 -2.264 -2.763 1.962 ETKDGv3 18
9RZ C4 0.023 -2.567 1.381 ETKDGv3 19
9RZ C5 0.865 -1.426 0.902 ETKDGv3 20
9RZ C6 2.038 -3.494 2.485 ETKDGv3 21
9RZ O8 -0.124 -4.685 2.554 ETKDGv3 22
9RZ N12 4.359 -0.949 1.543 ETKDGv3 23
9RZ N13 4.107 -2.156 2.217 ETKDGv3 24
9RZ O15 2.100 1.276 -0.051 ETKDGv3 25
9RZ N17 4.425 1.443 -0.163 ETKDGv3 26
9RZ C18 5.457 0.734 -0.931 ETKDGv3 27
9RZ O22 7.812 0.606 -1.353 ETKDGv3 28
9RZ C23 8.973 0.251 -0.635 ETKDGv3 29
9RZ C25 -3.988 -1.747 -1.380 ETKDGv3 30
9RZ C26 -5.474 0.087 -0.718 ETKDGv3 31
9RZ C28 -5.229 -0.959 -1.528 ETKDGv3 32
9RZ C29 -3.365 -0.288 0.472 ETKDGv3 33
9RZ N31 -6.682 0.860 -0.853 ETKDGv3 34
9RZ O34 -8.784 2.071 0.242 ETKDGv3 35
9RZ C36 -6.618 2.324 -0.951 ETKDGv3 36
9RZ H1 3.715 3.319 0.554 ETKDGv3 37
9RZ H2 4.214 3.286 -1.178 ETKDGv3 38
9RZ H3 6.976 0.891 0.576 ETKDGv3 39
9RZ H4 7.938 3.069 -0.222 ETKDGv3 40
9RZ H5 6.847 3.049 -1.650 ETKDGv3 41
9RZ H7 6.019 3.171 1.327 ETKDGv3 42
9RZ H6 5.908 4.503 0.122 ETKDGv3 43
9RZ H8 -4.678 1.249 1.015 ETKDGv3 44
9RZ H10 -1.653 -3.763 -1.677 ETKDGv3 45
9RZ H11 -1.306 -2.104 -2.318 ETKDGv3 46
9RZ H9 -0.117 -2.920 -1.258 ETKDGv3 47
9RZ H13 -8.061 -0.617 -0.242 ETKDGv3 48
9RZ H12 -8.059 -0.270 -2.016 ETKDGv3 49
9RZ H14 -9.345 1.726 -1.746 ETKDGv3 50
9RZ H15 -10.041 0.626 -0.517 ETKDGv3 51
9RZ H17 -8.265 3.769 -0.835 ETKDGv3 52
9RZ H16 -7.394 3.507 0.699 ETKDGv3 53
9RZ H18 0.439 -0.635 0.299 ETKDGv3 54
9RZ H19 2.509 -4.269 3.077 ETKDGv3 55
9RZ H20 -1.073 -4.883 2.264 ETKDGv3 56
9RZ HN13 4.816 -2.710 2.745 ETKDGv3 57
9RZ H23 5.311 0.943 -2.013 ETKDGv3 58
9RZ H22 5.380 -0.366 -0.792 ETKDGv3 59
9RZ H25 9.410 1.127 -0.107 ETKDGv3 60
9RZ H26 9.733 -0.123 -1.351 ETKDGv3 61
9RZ H24 8.756 -0.568 0.086 ETKDGv3 62
9RZ H27 -3.829 -2.587 -2.044 ETKDGv3 63
9RZ H28 -5.924 -1.229 -2.311 ETKDGv3 64
9RZ H29 -2.653 -0.020 1.242 ETKDGv3 65
9RZ H30 -6.671 2.604 -2.026 ETKDGv3 66
9RZ H31 -5.655 2.716 -0.561 ETKDGv3 67
#