data_9S3
#
_chem_comp.id 9S3
_chem_comp.name
1-[(2S,4R)-2-methyl-4-(phenylamino)-6-[4-(piperidin-1-ylmethyl)phenyl]-3,4-dihydroquinolin-1(2H)-yl]ethanone
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H35 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-08-31
_chem_comp.pdbx_modified_date 2014-10-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 453.618
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9S3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UYH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9S3 O O O 0 1 N N N N N N 39.512 7.043 1.161 -4.781 3.337 -0.306 O 9S3 1
9S3 C17 C17 C 0 1 N N N N N N 40.419 6.646 1.878 -5.313 2.401 0.253 C17 9S3 2
9S3 C18 C18 C 0 1 N N N N N N 40.298 6.560 3.371 -6.733 2.522 0.741 C18 9S3 3
9S3 N2 N2 N 0 1 N N N N N N 41.612 6.265 1.331 -4.634 1.250 0.432 N2 9S3 4
9S3 C2 C2 C 0 1 N N S N N N 41.736 6.333 -0.133 -5.326 0.040 0.894 C2 9S3 5
9S3 C1 C1 C 0 1 N N N N N N 42.600 7.512 -0.563 -6.838 0.213 0.731 C1 9S3 6
9S3 C16 C16 C 0 1 Y N N N N N 42.740 5.830 2.049 -3.258 1.187 0.174 C16 9S3 7
9S3 C11 C11 C 0 1 Y N N N N N 43.321 4.698 1.564 -2.608 -0.035 0.086 C11 9S3 8
9S3 C4 C4 C 0 1 N N R N N N 42.777 3.995 0.348 -3.347 -1.335 0.269 C4 9S3 9
9S3 N1 N1 N 0 1 N N N N N N 43.787 3.127 -0.220 -2.839 -2.319 -0.690 N1 9S3 10
9S3 C5 C5 C 0 1 Y N N N N N 43.809 1.816 0.111 -1.704 -3.073 -0.381 C5 9S3 11
9S3 C10 C10 C 0 1 Y N N N N N 44.690 0.953 -0.531 -1.221 -4.007 -1.289 C10 9S3 12
9S3 C9 C9 C 0 1 Y N N N N N 44.703 -0.398 -0.203 -0.098 -4.750 -0.981 C9 9S3 13
9S3 C8 C8 C 0 1 Y N N N N N 43.830 -0.885 0.762 0.544 -4.565 0.229 C8 9S3 14
9S3 C7 C7 C 0 1 Y N N N N N 42.942 -0.027 1.402 0.066 -3.637 1.135 C7 9S3 15
9S3 C6 C6 C 0 1 Y N N N N N 42.932 1.327 1.075 -1.053 -2.886 0.831 C6 9S3 16
9S3 C3 C3 C 0 1 N N N N N N 42.263 5.003 -0.674 -4.842 -1.135 0.034 C3 9S3 17
9S3 C15 C15 C 0 1 Y N N N N N 43.217 6.498 3.166 -2.548 2.372 0.007 C15 9S3 18
9S3 C14 C14 C 0 1 Y N N N N N 44.341 5.989 3.806 -1.195 2.339 -0.250 C14 9S3 19
9S3 C13 C13 C 0 1 Y N N N N N 44.956 4.832 3.332 -0.538 1.113 -0.343 C13 9S3 20
9S3 C12 C12 C 0 1 Y N N N N N 44.451 4.185 2.203 -1.251 -0.071 -0.175 C12 9S3 21
9S3 C19 C19 C 0 1 Y N N N N N 46.169 4.335 4.037 0.919 1.070 -0.622 C19 9S3 22
9S3 C30 C30 C 0 1 Y N N N N N 46.289 4.484 5.415 1.633 2.254 -0.791 C30 9S3 23
9S3 C29 C29 C 0 1 Y N N N N N 47.433 4.038 6.068 2.988 2.208 -1.050 C29 9S3 24
9S3 C22 C22 C 0 1 Y N N N N N 48.463 3.450 5.344 3.637 0.990 -1.142 C22 9S3 25
9S3 C21 C21 C 0 1 Y N N N N N 48.352 3.309 3.966 2.932 -0.189 -0.974 C21 9S3 26
9S3 C20 C20 C 0 1 Y N N N N N 47.207 3.755 3.314 1.578 -0.154 -0.709 C20 9S3 27
9S3 C23 C23 C 0 1 N N N N N N 49.700 2.968 6.065 5.116 0.947 -1.425 C23 9S3 28
9S3 N3 N3 N 0 1 N N N N N N 50.828 2.720 5.173 5.859 0.970 -0.158 N3 9S3 29
9S3 C28 C28 C 0 1 N N N N N N 51.213 1.317 5.174 7.294 1.167 -0.393 C28 9S3 30
9S3 C27 C27 C 0 1 N N N N N N 52.156 1.129 3.993 8.014 1.331 0.948 C27 9S3 31
9S3 C26 C26 C 0 1 N N N N N N 53.414 1.967 4.176 7.785 0.080 1.801 C26 9S3 32
9S3 C25 C25 C 0 1 N N N N N N 53.054 3.417 4.468 6.280 -0.130 1.990 C25 9S3 33
9S3 C24 C24 C 0 1 N N N N N N 51.951 3.515 5.518 5.610 -0.251 0.620 C24 9S3 34
9S3 H181 H181 H 0 0 N N N N N N 39.299 6.901 3.679 -7.074 3.550 0.616 H181 9S3 35
9S3 H182 H182 H 0 0 N N N N N N 40.444 5.518 3.691 -7.374 1.854 0.165 H182 9S3 36
9S3 H183 H183 H 0 0 N N N N N N 41.063 7.198 3.838 -6.779 2.250 1.796 H183 9S3 37
9S3 H2 H2 H 0 1 N N N N N N 40.732 6.487 -0.556 -5.087 -0.145 1.941 H2 9S3 38
9S3 H11C H11C H 0 0 N N N N N N 42.672 7.534 -1.660 -7.054 0.594 -0.267 H11C 9S3 39
9S3 H12C H12C H 0 0 N N N N N N 42.146 8.448 -0.207 -7.331 -0.750 0.867 H12C 9S3 40
9S3 H13C H13C H 0 0 N N N N N N 43.606 7.406 -0.132 -7.206 0.918 1.477 H13C 9S3 41
9S3 H31C H31C H 0 0 N N N N N N 41.444 4.523 -1.230 -5.379 -2.040 0.316 H31C 9S3 42
9S3 H32C H32C H 0 0 N N N N N N 43.091 5.229 -1.362 -5.021 -0.915 -1.019 H32C 9S3 43
9S3 H15 H15 H 0 1 N N N N N N 42.728 7.390 3.529 -3.060 3.320 0.079 H15 9S3 44
9S3 H4 H4 H 0 1 N N N N N N 41.924 3.379 0.668 -3.184 -1.702 1.282 H4 9S3 45
9S3 H12 H12 H 0 1 N N N N N N 44.931 3.294 1.827 -0.742 -1.021 -0.247 H12 9S3 46
9S3 H1 H1 H 0 1 N N N N N N 43.683 3.173 -1.214 -3.290 -2.448 -1.539 H1 9S3 47
9S3 H10 H10 H 0 1 N N N N N N 45.364 1.332 -1.285 -1.723 -4.152 -2.234 H10 9S3 48
9S3 H6 H6 H 0 1 N N N N N N 42.244 1.997 1.569 -1.423 -2.158 1.537 H6 9S3 49
9S3 H9 H9 H 0 1 N N N N N N 45.391 -1.068 -0.698 0.278 -5.477 -1.686 H9 9S3 50
9S3 H8 H8 H 0 1 N N N N N N 43.841 -1.935 1.016 1.422 -5.148 0.468 H8 9S3 51
9S3 H7 H7 H 0 1 N N N N N N 42.263 -0.409 2.150 0.570 -3.495 2.079 H7 9S3 52
9S3 H14 H14 H 0 1 N N N N N N 44.739 6.492 4.674 -0.645 3.259 -0.380 H14 9S3 53
9S3 H30 H30 H 0 1 N N N N N N 45.492 4.947 5.979 1.128 3.206 -0.720 H30 9S3 54
9S3 H20 H20 H 0 1 N N N N N N 47.123 3.651 2.242 1.030 -1.075 -0.574 H20 9S3 55
9S3 H29 H29 H 0 1 N N N N N N 47.521 4.149 7.139 3.543 3.126 -1.182 H29 9S3 56
9S3 H21 H21 H 0 1 N N N N N N 49.153 2.854 3.402 3.443 -1.137 -1.047 H21 9S3 57
9S3 H231 H231 H 0 0 N N N N N N 49.996 3.732 6.799 5.355 0.033 -1.970 H231 9S3 58
9S3 H232 H232 H 0 0 N N N N N N 49.456 2.032 6.589 5.397 1.811 -2.026 H232 9S3 59
9S3 H281 H281 H 0 0 N N N N N N 51.725 1.064 6.114 7.699 0.302 -0.918 H281 9S3 60
9S3 H282 H282 H 0 0 N N N N N N 50.325 0.679 5.057 7.444 2.061 -0.997 H282 9S3 61
9S3 H241 H241 H 0 0 N N N N N N 51.632 4.564 5.604 4.537 -0.387 0.750 H241 9S3 62
9S3 H242 H242 H 0 0 N N N N N N 52.347 3.172 6.485 6.022 -1.110 0.089 H242 9S3 63
9S3 H271 H271 H 0 0 N N N N N N 52.436 0.068 3.919 9.082 1.462 0.774 H271 9S3 64
9S3 H272 H272 H 0 0 N N N N N N 51.646 1.439 3.069 7.620 2.204 1.468 H272 9S3 65
9S3 H261 H261 H 0 0 N N N N N N 53.998 1.563 5.016 8.213 -0.787 1.299 H261 9S3 66
9S3 H262 H262 H 0 0 N N N N N N 54.015 1.922 3.256 8.259 0.211 2.774 H262 9S3 67
9S3 H251 H251 H 0 0 N N N N N N 53.948 3.940 4.838 6.108 -1.042 2.561 H251 9S3 68
9S3 H252 H252 H 0 0 N N N N N N 52.708 3.894 3.539 5.858 0.721 2.527 H252 9S3 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9S3 O C17 DOUB N N 1
9S3 C17 C18 SING N N 2
9S3 C17 N2 SING N N 3
9S3 N2 C2 SING N N 4
9S3 N2 C16 SING N N 5
9S3 C2 C1 SING N N 6
9S3 C2 C3 SING N N 7
9S3 C16 C11 SING Y N 8
9S3 C16 C15 DOUB Y N 9
9S3 C11 C4 SING N N 10
9S3 C11 C12 DOUB Y N 11
9S3 C4 N1 SING N N 12
9S3 C4 C3 SING N N 13
9S3 N1 C5 SING N N 14
9S3 C5 C10 SING Y N 15
9S3 C5 C6 DOUB Y N 16
9S3 C10 C9 DOUB Y N 17
9S3 C9 C8 SING Y N 18
9S3 C8 C7 DOUB Y N 19
9S3 C7 C6 SING Y N 20
9S3 C15 C14 SING Y N 21
9S3 C14 C13 DOUB Y N 22
9S3 C13 C12 SING Y N 23
9S3 C13 C19 SING N N 24
9S3 C19 C30 SING Y N 25
9S3 C19 C20 DOUB Y N 26
9S3 C30 C29 DOUB Y N 27
9S3 C29 C22 SING Y N 28
9S3 C22 C21 DOUB Y N 29
9S3 C22 C23 SING N N 30
9S3 C21 C20 SING Y N 31
9S3 C23 N3 SING N N 32
9S3 N3 C28 SING N N 33
9S3 N3 C24 SING N N 34
9S3 C28 C27 SING N N 35
9S3 C27 C26 SING N N 36
9S3 C26 C25 SING N N 37
9S3 C25 C24 SING N N 38
9S3 C18 H181 SING N N 39
9S3 C18 H182 SING N N 40
9S3 C18 H183 SING N N 41
9S3 C2 H2 SING N N 42
9S3 C1 H11C SING N N 43
9S3 C1 H12C SING N N 44
9S3 C1 H13C SING N N 45
9S3 C3 H31C SING N N 46
9S3 C3 H32C SING N N 47
9S3 C15 H15 SING N N 48
9S3 C4 H4 SING N N 49
9S3 C12 H12 SING N N 50
9S3 N1 H1 SING N N 51
9S3 C10 H10 SING N N 52
9S3 C6 H6 SING N N 53
9S3 C9 H9 SING N N 54
9S3 C8 H8 SING N N 55
9S3 C7 H7 SING N N 56
9S3 C14 H14 SING N N 57
9S3 C30 H30 SING N N 58
9S3 C20 H20 SING N N 59
9S3 C29 H29 SING N N 60
9S3 C21 H21 SING N N 61
9S3 C23 H231 SING N N 62
9S3 C23 H232 SING N N 63
9S3 C28 H281 SING N N 64
9S3 C28 H282 SING N N 65
9S3 C24 H241 SING N N 66
9S3 C24 H242 SING N N 67
9S3 C27 H271 SING N N 68
9S3 C27 H272 SING N N 69
9S3 C26 H261 SING N N 70
9S3 C26 H262 SING N N 71
9S3 C25 H251 SING N N 72
9S3 C25 H252 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9S3 SMILES ACDLabs 12.01 O=C(N3c1ccc(cc1C(Nc2ccccc2)CC3C)c4ccc(cc4)CN5CCCCC5)C
9S3 InChI InChI 1.03 InChI=1S/C30H35N3O/c1-22-19-29(31-27-9-5-3-6-10-27)28-20-26(15-16-30(28)33(22)23(2)34)25-13-11-24(12-14-25)21-32-17-7-4-8-18-32/h3,5-6,9-16,20,22,29,31H,4,7-8,17-19,21H2,1-2H3/t22-,29+/m0/s1
9S3 InChIKey InChI 1.03 HHLPOWRWLBEWKR-PZGXJGMVSA-N
9S3 SMILES_CANONICAL CACTVS 3.385 C[C@H]1C[C@@H](Nc2ccccc2)c3cc(ccc3N1C(C)=O)c4ccc(CN5CCCCC5)cc4
9S3 SMILES CACTVS 3.385 C[CH]1C[CH](Nc2ccccc2)c3cc(ccc3N1C(C)=O)c4ccc(CN5CCCCC5)cc4
9S3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@H]1C[C@H](c2cc(ccc2N1C(=O)C)c3ccc(cc3)CN4CCCCC4)Nc5ccccc5
9S3 SMILES "OpenEye OEToolkits" 1.7.6 CC1CC(c2cc(ccc2N1C(=O)C)c3ccc(cc3)CN4CCCCC4)Nc5ccccc5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9S3 "SYSTEMATIC NAME" ACDLabs 12.01 1-[(2S,4R)-2-methyl-4-(phenylamino)-6-[4-(piperidin-1-ylmethyl)phenyl]-3,4-dihydroquinolin-1(2H)-yl]ethanone
9S3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 1-[(2S,4R)-2-methyl-4-phenylazanyl-6-[4-(piperidin-1-ylmethyl)phenyl]-3,4-dihydro-2H-quinolin-1-yl]ethanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9S3 'Create component' 2014-08-31 EBI
9S3 'Initial release' 2014-10-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9S3 O O 14.790 -4.875 1
9S3 C17 C 16.089 -4.125 2
9S3 C18 C 17.388 -4.875 3
9S3 N2 N 16.089 -2.625 4
9S3 C2 C 17.388 -1.875 5
9S3 C1 C 18.687 -2.625 6
9S3 C16 C 14.790 -1.875 7
9S3 C11 C 14.790 -0.375 8
9S3 C4 C 16.089 0.375 9
9S3 N1 N 16.089 1.875 10
9S3 C5 C 17.388 2.625 11
9S3 C10 C 18.687 1.875 12
9S3 C9 C 19.986 2.625 13
9S3 C8 C 19.986 4.125 14
9S3 C7 C 18.687 4.875 15
9S3 C6 C 17.388 4.125 16
9S3 C3 C 17.388 -0.375 17
9S3 C15 C 13.450 -2.677 18
9S3 C14 C 12.090 -1.906 19
9S3 C13 C 12.090 -0.344 20
9S3 C12 C 13.450 0.427 21
9S3 C19 C 10.794 0.411 22
9S3 C30 C 9.492 -0.334 23
9S3 C29 C 8.196 0.421 24
9S3 C22 C 8.202 1.921 25
9S3 C21 C 9.504 2.666 26
9S3 C20 C 10.800 1.911 27
9S3 C23 C 6.906 2.676 28
9S3 N3 N 5.604 1.931 29
9S3 C28 C 5.598 0.431 30
9S3 C27 C 4.296 -0.314 31
9S3 C26 C 3.000 0.441 32
9S3 C25 C 3.006 1.941 33
9S3 C24 C 4.308 2.686 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9S3 O C17 DOUBLE NONE 1
9S3 C17 C18 SINGLE NONE 2
9S3 C17 N2 SINGLE NONE 3
9S3 N2 C2 SINGLE NONE 4
9S3 N2 C16 SINGLE NONE 5
9S3 C2 C1 SINGLE BEGINDASH 6
9S3 C2 C3 SINGLE NONE 7
9S3 C16 C11 DOUBLE NONE 8
9S3 C16 C15 SINGLE NONE 9
9S3 C11 C4 SINGLE NONE 10
9S3 C11 C12 SINGLE NONE 11
9S3 C4 N1 SINGLE BEGINDASH 12
9S3 C4 C3 SINGLE NONE 13
9S3 N1 C5 SINGLE NONE 14
9S3 C5 C10 DOUBLE NONE 15
9S3 C5 C6 SINGLE NONE 16
9S3 C10 C9 SINGLE NONE 17
9S3 C9 C8 DOUBLE NONE 18
9S3 C8 C7 SINGLE NONE 19
9S3 C7 C6 DOUBLE NONE 20
9S3 C15 C14 DOUBLE NONE 21
9S3 C14 C13 SINGLE NONE 22
9S3 C13 C12 DOUBLE NONE 23
9S3 C13 C19 SINGLE NONE 24
9S3 C19 C30 DOUBLE NONE 25
9S3 C19 C20 SINGLE NONE 26
9S3 C30 C29 SINGLE NONE 27
9S3 C29 C22 DOUBLE NONE 28
9S3 C22 C21 SINGLE NONE 29
9S3 C22 C23 SINGLE NONE 30
9S3 C21 C20 DOUBLE NONE 31
9S3 C23 N3 SINGLE NONE 32
9S3 N3 C28 SINGLE NONE 33
9S3 N3 C24 SINGLE NONE 34
9S3 C28 C27 SINGLE NONE 35
9S3 C27 C26 SINGLE NONE 36
9S3 C26 C25 SINGLE NONE 37
9S3 C25 C24 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9S3 MurckoScaffold S1 scaffold 'c1ccc(N[C@@H]2CCNc3ccc(-c4ccc(CN5CCCCC5)cc4)cc32)cc1' InChI=1S/C27H31N3/c1-3-7-24(8-4-1)29-27-15-16-28-26-14-13-23(19-25(26)27)22-11-9-21(10-12-22)20-30-17-5-2-6-18-30/h1,3-4,7-14,19,27-29H,2,5-6,15-18,20H2/t27-/m1/s1 YLJQMHUZFMGGNO-HHHXNRCGSA-N
9S3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9S3 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9S3 Z28870646 F3 fragment CC(=O)N1c2ccccc2CCC1C InChI=1S/C12H15NO/c1-9-7-8-11-5-3-4-6-12(11)13(9)10(2)14/h3-6,9H,7-8H2,1-2H3 IJTWYLGCGAIGAQ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9S3 N2 S1 1
9S3 C2 S1 1
9S3 C16 S1 1
9S3 C11 S1 1
9S3 C4 S1 1
9S3 N1 S1 1
9S3 C5 S1 1
9S3 C10 S1 1
9S3 C9 S1 1
9S3 C8 S1 1
9S3 C7 S1 1
9S3 C6 S1 1
9S3 C3 S1 1
9S3 C15 S1 1
9S3 C14 S1 1
9S3 C13 S1 1
9S3 C12 S1 1
9S3 C19 S1 1
9S3 C30 S1 1
9S3 C29 S1 1
9S3 C22 S1 1
9S3 C21 S1 1
9S3 C20 S1 1
9S3 C23 S1 1
9S3 N3 S1 1
9S3 C28 S1 1
9S3 C27 S1 1
9S3 C26 S1 1
9S3 C25 S1 1
9S3 C24 S1 1
9S3 N2 F1 1
9S3 C17 F1 1
9S3 O F1 1
9S3 C18 F1 1
9S3 C16 F2 1
9S3 C11 F2 1
9S3 C12 F2 1
9S3 C13 F2 1
9S3 C14 F2 1
9S3 C15 F2 1
9S3 C5 F2 2
9S3 C10 F2 2
9S3 C9 F2 2
9S3 C8 F2 2
9S3 C7 F2 2
9S3 C6 F2 2
9S3 C19 F2 3
9S3 C30 F2 3
9S3 C29 F2 3
9S3 C22 F2 3
9S3 C21 F2 3
9S3 C20 F2 3
9S3 C1 F3 1
9S3 C2 F3 1
9S3 C3 F3 1
9S3 C4 F3 1
9S3 C11 F3 1
9S3 C12 F3 1
9S3 C13 F3 1
9S3 C14 F3 1
9S3 C15 F3 1
9S3 C16 F3 1
9S3 N2 F3 1
9S3 C17 F3 1
9S3 O F3 1
9S3 C18 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9S3
_pdbe_chem_comp_rdkit_properties.exactmw 453.278
_pdbe_chem_comp_rdkit_properties.amw 453.630
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 69
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.367
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.376
_pdbe_chem_comp_rdkit_properties.tpsa 35.580
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.387
_pdbe_chem_comp_rdkit_properties.CrippenMR 137.549
_pdbe_chem_comp_rdkit_properties.chi0v 16.750
_pdbe_chem_comp_rdkit_properties.chi1v 9.243
_pdbe_chem_comp_rdkit_properties.chi2v 4.186
_pdbe_chem_comp_rdkit_properties.chi3v 4.186
_pdbe_chem_comp_rdkit_properties.chi4v 2.792
_pdbe_chem_comp_rdkit_properties.chi0n 51.750
_pdbe_chem_comp_rdkit_properties.chi1n 26.690
_pdbe_chem_comp_rdkit_properties.chi2n 4.186
_pdbe_chem_comp_rdkit_properties.chi3n 4.186
_pdbe_chem_comp_rdkit_properties.chi4n 2.792
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.110
_pdbe_chem_comp_rdkit_properties.kappa1 5.650
_pdbe_chem_comp_rdkit_properties.kappa2 10.023
_pdbe_chem_comp_rdkit_properties.kappa3 4.876
_pdbe_chem_comp_rdkit_properties.Phi 1.666
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9S3 UniChem ChEMBL CHEMBL3353992
9S3 UniChem PDBe 9S3
9S3 UniChem ZINC ZINC000117490807
9S3 UniChem SureChEMBL SCHEMBL11906685
9S3 UniChem BindingDb 50028128
9S3 UniChem PubChem 68161075
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9S3 O -4.586 4.187 2.553 ETKDGv3 1
9S3 C17 -3.942 3.655 1.610 ETKDGv3 2
9S3 C18 -3.412 4.520 0.509 ETKDGv3 3
9S3 N2 -3.799 2.224 1.560 ETKDGv3 4
9S3 C2 -5.036 1.419 1.574 ETKDGv3 5
9S3 C1 -5.862 1.683 0.303 ETKDGv3 6
9S3 C16 -2.487 1.615 1.426 ETKDGv3 7
9S3 C11 -2.360 0.301 1.128 ETKDGv3 8
9S3 C4 -3.569 -0.577 0.916 ETKDGv3 9
9S3 N1 -3.916 -0.627 -0.511 ETKDGv3 10
9S3 C5 -4.879 -1.527 -1.096 ETKDGv3 11
9S3 C10 -5.360 -2.600 -0.435 ETKDGv3 12
9S3 C9 -6.344 -3.495 -1.079 ETKDGv3 13
9S3 C8 -6.760 -3.250 -2.327 ETKDGv3 14
9S3 C7 -6.234 -2.084 -3.063 ETKDGv3 15
9S3 C6 -5.343 -1.271 -2.483 ETKDGv3 16
9S3 C3 -4.744 -0.080 1.774 ETKDGv3 17
9S3 C15 -1.251 2.410 1.672 ETKDGv3 18
9S3 C14 -0.042 1.860 1.529 ETKDGv3 19
9S3 C13 0.098 0.438 1.134 ETKDGv3 20
9S3 C12 -1.013 -0.295 0.947 ETKDGv3 21
9S3 C19 1.443 -0.164 0.952 ETKDGv3 22
9S3 C30 2.452 0.136 1.793 ETKDGv3 23
9S3 C29 3.788 -0.467 1.608 ETKDGv3 24
9S3 C22 4.011 -1.329 0.603 ETKDGv3 25
9S3 C21 2.909 -1.655 -0.332 ETKDGv3 26
9S3 C20 1.699 -1.107 -0.168 ETKDGv3 27
9S3 C23 5.380 -1.921 0.394 ETKDGv3 28
9S3 N3 6.324 -0.898 -0.103 ETKDGv3 29
9S3 C28 5.985 -0.485 -1.489 ETKDGv3 30
9S3 C27 7.117 0.317 -2.169 ETKDGv3 31
9S3 C26 8.104 0.873 -1.142 ETKDGv3 32
9S3 C25 8.711 -0.258 -0.298 ETKDGv3 33
9S3 C24 7.710 -1.399 -0.034 ETKDGv3 34
9S3 H181 -2.701 5.264 0.925 ETKDGv3 35
9S3 H182 -4.254 5.055 0.022 ETKDGv3 36
9S3 H183 -2.894 3.907 -0.258 ETKDGv3 37
9S3 H2 -5.660 1.738 2.439 ETKDGv3 38
9S3 H11C -5.235 1.603 -0.607 ETKDGv3 39
9S3 H12C -6.712 0.972 0.228 ETKDGv3 40
9S3 H13C -6.282 2.711 0.335 ETKDGv3 41
9S3 H31C -4.480 -0.241 2.843 ETKDGv3 42
9S3 H32C -5.658 -0.683 1.585 ETKDGv3 43
9S3 H15 -1.314 3.443 1.984 ETKDGv3 44
9S3 H4 -3.301 -1.600 1.259 ETKDGv3 45
9S3 H12 -0.938 -1.342 0.680 ETKDGv3 46
9S3 H1 -3.460 0.061 -1.154 ETKDGv3 47
9S3 H10 -5.042 -2.840 0.569 ETKDGv3 48
9S3 H6 -4.965 -0.416 -3.030 ETKDGv3 49
9S3 H9 -6.727 -4.351 -0.539 ETKDGv3 50
9S3 H8 -7.481 -3.905 -2.799 ETKDGv3 51
9S3 H7 -6.571 -1.889 -4.073 ETKDGv3 52
9S3 H14 0.837 2.469 1.697 ETKDGv3 53
9S3 H30 2.299 0.805 2.630 ETKDGv3 54
9S3 H20 0.912 -1.343 -0.874 ETKDGv3 55
9S3 H29 4.584 -0.202 2.294 ETKDGv3 56
9S3 H21 3.081 -2.331 -1.160 ETKDGv3 57
9S3 H231 5.725 -2.320 1.374 ETKDGv3 58
9S3 H232 5.333 -2.789 -0.303 ETKDGv3 59
9S3 H281 5.079 0.159 -1.456 ETKDGv3 60
9S3 H282 5.745 -1.368 -2.124 ETKDGv3 61
9S3 H241 7.928 -1.821 0.972 ETKDGv3 62
9S3 H242 7.862 -2.213 -0.781 ETKDGv3 63
9S3 H271 7.668 -0.345 -2.873 ETKDGv3 64
9S3 H272 6.686 1.152 -2.762 ETKDGv3 65
9S3 H261 7.571 1.588 -0.478 ETKDGv3 66
9S3 H262 8.914 1.430 -1.662 ETKDGv3 67
9S3 H251 9.602 -0.673 -0.818 ETKDGv3 68
9S3 H252 9.057 0.168 0.670 ETKDGv3 69
#