data_9UG
#
_chem_comp.id 9UG
_chem_comp.name (2R)-N,2,7-trimethyl-2,3-dihydro-4H-1,4-benzoxazine-4-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H16 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-06-09
_chem_comp.pdbx_modified_date 2018-03-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 220.268
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9UG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5W0Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9UG C4 C1 C 0 1 Y N N N N N 11.535 24.912 -5.437 -0.826 1.585 0.161 C4 9UG 1
9UG C5 C2 C 0 1 Y N N N N N 12.916 25.000 -5.542 -0.381 0.273 0.127 C5 9UG 2
9UG C6 C3 C 0 1 Y N N N N N 13.700 25.150 -4.402 -1.293 -0.773 0.015 C6 9UG 3
9UG C7 C4 C 0 1 Y N N N N N 13.096 25.190 -3.156 -2.648 -0.492 -0.068 C7 9UG 4
9UG C9 C5 C 0 1 N N R N N N 15.704 25.455 -5.763 0.492 -2.313 -0.362 C9 9UG 5
9UG C10 C6 C 0 1 N N N N N N 14.708 25.946 -6.829 1.395 -1.398 0.476 C10 9UG 6
9UG C12 C7 C 0 1 N N N N N N 13.383 24.124 -7.790 1.915 0.963 0.034 C12 9UG 7
9UG C3 C8 C 0 1 Y N N N N N 10.940 24.951 -4.188 -2.179 1.855 0.079 C3 9UG 8
9UG C1 C9 C 0 1 N N N N N N 11.076 25.137 -1.694 -4.561 1.120 -0.126 C1 9UG 9
9UG C15 C10 C 0 1 N N N N N N 12.186 22.298 -8.869 4.221 1.689 -0.266 C15 9UG 10
9UG C16 C11 C 0 1 N N N N N N 16.847 26.462 -5.617 0.836 -3.776 -0.076 C16 9UG 11
9UG C2 C12 C 0 1 Y N N N N N 11.723 25.090 -3.055 -3.087 0.819 -0.036 C2 9UG 12
9UG N11 N1 N 0 1 N N N N N N 13.611 24.976 -6.764 0.995 -0.007 0.204 N11 9UG 13
9UG N14 N2 N 0 1 N N N N N N 12.399 23.205 -7.739 3.227 0.655 0.030 N14 9UG 14
9UG O13 O1 O 0 1 N N N N N N 14.086 24.198 -8.784 1.561 2.117 -0.116 O13 9UG 15
9UG O8 O2 O 0 1 N N N N N N 15.058 25.252 -4.491 -0.871 -2.064 -0.010 O8 9UG 16
9UG H1 H1 H 0 1 N N N N N N 10.928 24.814 -6.325 -0.117 2.394 0.255 H1 9UG 17
9UG H2 H2 H 0 1 N N N N N N 13.698 25.299 -2.266 -3.362 -1.297 -0.159 H2 9UG 18
9UG H3 H3 H 0 1 N N N N N N 16.130 24.502 -6.110 0.639 -2.104 -1.422 H3 9UG 19
9UG H4 H4 H 0 1 N N N N N N 15.171 25.946 -7.827 1.266 -1.620 1.535 H4 9UG 20
9UG H5 H5 H 0 1 N N N N N N 14.349 26.958 -6.592 2.437 -1.545 0.191 H5 9UG 21
9UG H6 H6 H 0 1 N N N N N N 9.867 24.873 -4.098 -2.528 2.877 0.109 H6 9UG 22
9UG H7 H7 H 0 1 N N N N N N 10.998 24.117 -1.289 -4.989 1.142 0.876 H7 9UG 23
9UG H8 H8 H 0 1 N N N N N N 11.687 25.753 -1.019 -4.706 2.088 -0.605 H8 9UG 24
9UG H9 H9 H 0 1 N N N N N N 10.071 25.575 -1.781 -5.054 0.346 -0.715 H9 9UG 25
9UG H10 H10 H 0 1 N N N N N N 11.345 21.624 -8.646 5.220 1.255 -0.222 H10 9UG 26
9UG H11 H11 H 0 1 N N N N N N 11.957 22.884 -9.771 4.043 2.090 -1.263 H11 9UG 27
9UG H12 H12 H 0 1 N N N N N N 13.096 21.704 -9.039 4.141 2.491 0.468 H12 9UG 28
9UG H13 H13 H 0 1 N N N N N N 17.555 26.106 -4.854 0.186 -4.424 -0.663 H13 9UG 29
9UG H14 H14 H 0 1 N N N N N N 17.368 26.567 -6.580 1.875 -3.964 -0.345 H14 9UG 30
9UG H15 H15 H 0 1 N N N N N N 16.440 27.437 -5.312 0.693 -3.982 0.985 H15 9UG 31
9UG H16 H16 H 0 1 N N N N N N 11.814 23.142 -6.930 3.512 -0.252 0.224 H16 9UG 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9UG C15 N14 SING N N 1
9UG O13 C12 DOUB N N 2
9UG C12 N14 SING N N 3
9UG C12 N11 SING N N 4
9UG C10 N11 SING N N 5
9UG C10 C9 SING N N 6
9UG N11 C5 SING N N 7
9UG C9 C16 SING N N 8
9UG C9 O8 SING N N 9
9UG C5 C4 DOUB Y N 10
9UG C5 C6 SING Y N 11
9UG C4 C3 SING Y N 12
9UG O8 C6 SING N N 13
9UG C6 C7 DOUB Y N 14
9UG C3 C2 DOUB Y N 15
9UG C7 C2 SING Y N 16
9UG C2 C1 SING N N 17
9UG C4 H1 SING N N 18
9UG C7 H2 SING N N 19
9UG C9 H3 SING N N 20
9UG C10 H4 SING N N 21
9UG C10 H5 SING N N 22
9UG C3 H6 SING N N 23
9UG C1 H7 SING N N 24
9UG C1 H8 SING N N 25
9UG C1 H9 SING N N 26
9UG C15 H10 SING N N 27
9UG C15 H11 SING N N 28
9UG C15 H12 SING N N 29
9UG C16 H13 SING N N 30
9UG C16 H14 SING N N 31
9UG C16 H15 SING N N 32
9UG N14 H16 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9UG SMILES ACDLabs 12.01 c1cc(cc2c1N(CC(C)O2)C(NC)=O)C
9UG InChI InChI 1.03 InChI=1S/C12H16N2O2/c1-8-4-5-10-11(6-8)16-9(2)7-14(10)12(15)13-3/h4-6,9H,7H2,1-3H3,(H,13,15)/t9-/m1/s1
9UG InChIKey InChI 1.03 FWSAWLIRIYMUOD-SECBINFHSA-N
9UG SMILES_CANONICAL CACTVS 3.385 CNC(=O)N1C[C@@H](C)Oc2cc(C)ccc12
9UG SMILES CACTVS 3.385 CNC(=O)N1C[CH](C)Oc2cc(C)ccc12
9UG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1ccc2c(c1)O[C@@H](CN2C(=O)NC)C
9UG SMILES "OpenEye OEToolkits" 2.0.6 Cc1ccc2c(c1)OC(CN2C(=O)NC)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9UG "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-N,2,7-trimethyl-2,3-dihydro-4H-1,4-benzoxazine-4-carboxamide
9UG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (2~{R})-~{N},2,7-trimethyl-2,3-dihydro-1,4-benzoxazine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9UG 'Create component' 2017-06-09 RCSB
9UG 'Initial release' 2018-03-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9UG C4 C 5.655 0.297 1
9UG C5 C 6.996 1.099 2
9UG C6 C 6.996 2.599 3
9UG C7 C 5.655 3.401 4
9UG C9 C 9.594 2.599 5
9UG C10 C 9.594 1.099 6
9UG C12 C 8.295 -1.151 7
9UG C3 C 4.296 1.068 8
9UG C1 C 3.000 3.385 9
9UG C15 C 9.594 -3.401 10
9UG C16 C 10.893 3.349 11
9UG C2 C 4.296 2.630 12
9UG N11 N 8.295 0.349 13
9UG N14 N 9.594 -1.901 14
9UG O13 O 6.996 -1.901 15
9UG O8 O 8.295 3.349 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9UG C15 N14 SINGLE NONE 1
9UG O13 C12 DOUBLE NONE 2
9UG C12 N14 SINGLE NONE 3
9UG C12 N11 SINGLE NONE 4
9UG C10 N11 SINGLE NONE 5
9UG C10 C9 SINGLE NONE 6
9UG N11 C5 SINGLE NONE 7
9UG C9 C16 SINGLE BEGINDASH 8
9UG C9 O8 SINGLE NONE 9
9UG C5 C4 DOUBLE NONE 10
9UG C5 C6 SINGLE NONE 11
9UG C4 C3 SINGLE NONE 12
9UG O8 C6 SINGLE NONE 13
9UG C6 C7 DOUBLE NONE 14
9UG C3 C2 DOUBLE NONE 15
9UG C7 C2 SINGLE NONE 16
9UG C2 C1 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9UG MurckoScaffold S1 scaffold c1ccc2c(c1)NCCO2 InChI=1S/C8H9NO/c1-2-4-8-7(3-1)9-5-6-10-8/h1-4,9H,5-6H2 YRLORWPBJZEGBX-UHFFFAOYSA-N
9UG phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9UG C4 S1 1
9UG C5 S1 1
9UG C6 S1 1
9UG C7 S1 1
9UG C9 S1 1
9UG C10 S1 1
9UG C3 S1 1
9UG C2 S1 1
9UG N11 S1 1
9UG O8 S1 1
9UG C4 F1 1
9UG C5 F1 1
9UG C6 F1 1
9UG C7 F1 1
9UG C2 F1 1
9UG C3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9UG
_pdbe_chem_comp_rdkit_properties.exactmw 220.121
_pdbe_chem_comp_rdkit_properties.amw 220.272
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 117.738
_pdbe_chem_comp_rdkit_properties.tpsa 41.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.024
_pdbe_chem_comp_rdkit_properties.CrippenMR 61.371
_pdbe_chem_comp_rdkit_properties.chi0v 7.711
_pdbe_chem_comp_rdkit_properties.chi1v 3.980
_pdbe_chem_comp_rdkit_properties.chi2v 1.688
_pdbe_chem_comp_rdkit_properties.chi3v 1.688
_pdbe_chem_comp_rdkit_properties.chi4v 1.090
_pdbe_chem_comp_rdkit_properties.chi0n 23.711
_pdbe_chem_comp_rdkit_properties.chi1n 11.928
_pdbe_chem_comp_rdkit_properties.chi2n 1.688
_pdbe_chem_comp_rdkit_properties.chi3n 1.688
_pdbe_chem_comp_rdkit_properties.chi4n 1.090
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 2.578
_pdbe_chem_comp_rdkit_properties.kappa2 4.040
_pdbe_chem_comp_rdkit_properties.kappa3 1.826
_pdbe_chem_comp_rdkit_properties.Phi 0.651
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9UG UniChem ChEMBL CHEMBL4089325
9UG UniChem PDBe 9UG
9UG UniChem ZINC ZINC000075403643
9UG UniChem PubChem 95991007
9UG UniChem BindingDb 50269854
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9UG C4 0.503 1.196 0.675 ETKDGv3 1
9UG C5 -0.081 0.155 0.047 ETKDGv3 2
9UG C6 -1.519 0.243 -0.299 ETKDGv3 3
9UG C7 -2.201 1.378 -0.103 ETKDGv3 4
9UG C9 -1.566 -2.181 -0.728 ETKDGv3 5
9UG C10 -0.062 -2.109 -1.056 ETKDGv3 6
9UG C12 2.046 -1.196 -0.112 ETKDGv3 7
9UG C3 -0.256 2.440 0.921 ETKDGv3 8
9UG C1 -2.316 3.796 0.794 ETKDGv3 9
9UG C15 4.373 -0.300 -0.518 ETKDGv3 10
9UG C16 -1.808 -2.775 0.663 ETKDGv3 11
9UG C2 -1.535 2.546 0.521 ETKDGv3 12
9UG N11 0.624 -1.069 -0.272 ETKDGv3 13
9UG N14 2.929 -0.236 -0.707 ETKDGv3 14
9UG O13 2.515 -2.185 0.513 ETKDGv3 15
9UG O8 -2.161 -0.885 -0.813 ETKDGv3 16
9UG H1 1.532 1.154 1.003 ETKDGv3 17
9UG H2 -3.251 1.428 -0.365 ETKDGv3 18
9UG H3 -2.061 -2.841 -1.472 ETKDGv3 19
9UG H4 0.057 -1.873 -2.136 ETKDGv3 20
9UG H5 0.404 -3.104 -0.878 ETKDGv3 21
9UG H6 0.237 3.266 1.417 ETKDGv3 22
9UG H7 -1.676 4.694 0.657 ETKDGv3 23
9UG H8 -3.177 3.878 0.097 ETKDGv3 24
9UG H9 -2.697 3.775 1.836 ETKDGv3 25
9UG H10 4.862 0.534 -1.063 ETKDGv3 26
9UG H11 4.614 -0.214 0.562 ETKDGv3 27
9UG H12 4.762 -1.263 -0.911 ETKDGv3 28
9UG H13 -1.400 -3.807 0.716 ETKDGv3 29
9UG H14 -2.898 -2.816 0.867 ETKDGv3 30
9UG H15 -1.324 -2.155 1.447 ETKDGv3 31
9UG H16 2.532 0.525 -1.302 ETKDGv3 32
#