data_9WY
#
_chem_comp.id 9WY
_chem_comp.name 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-3-O-phosphono-D-ribitol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H21 N4 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-06-20
_chem_comp.pdbx_modified_date 2018-06-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 456.344
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9WY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5W4Z
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9WY C10 C1 C 0 1 N N N N N N -120.927 155.601 163.652 -1.970 -1.152 0.361 C10 9WY 1
9WY C7 C2 C 0 1 Y N N N N N -121.109 155.652 168.598 -3.050 3.618 -0.428 C7 9WY 2
9WY O3P O1 O 0 1 N N N N N N -118.595 163.041 164.744 5.075 -0.088 1.209 O3P 9WY 3
9WY P P1 P 0 1 N N N N N N -117.793 161.801 164.464 3.664 0.664 1.397 P 9WY 4
9WY O1P O2 O 0 1 N N N N N N -116.710 162.120 163.467 2.833 -0.081 2.369 O1P 9WY 5
9WY O2P O3 O 0 1 N N N N N N -117.183 161.266 165.733 3.920 2.157 1.943 O2P 9WY 6
9WY "O5'" O4 O 0 1 N N N N N N -118.759 160.357 159.649 4.996 -1.591 -1.029 "O5'" 9WY 7
9WY "C5'" C3 C 0 1 N N N N N N -118.274 160.471 160.958 4.632 -0.521 -1.904 "C5'" 9WY 8
9WY "C4'" C4 C 0 1 N N R N N N -118.999 159.473 161.861 3.112 -0.504 -2.083 "C4'" 9WY 9
9WY "O4'" O5 O 0 1 N N N N N N -118.936 158.194 161.291 2.697 -1.697 -2.751 "O4'" 9WY 10
9WY "C3'" C5 C 0 1 N N S N N N -118.346 159.534 163.247 2.438 -0.426 -0.712 "C3'" 9WY 11
9WY "O3'" O6 O 0 1 N N N N N N -118.833 160.690 163.856 2.901 0.735 -0.019 "O3'" 9WY 12
9WY "C2'" C6 C 0 1 N N S N N N -118.731 158.370 164.162 0.921 -0.341 -0.894 "C2'" 9WY 13
9WY "O2'" O7 O 0 1 N N N N N N -117.977 157.970 164.973 0.440 -1.561 -1.462 "O2'" 9WY 14
9WY "C1'" C7 C 0 1 N N N N N N -120.138 157.818 164.048 0.257 -0.115 0.466 "C1'" 9WY 15
9WY N10 N1 N 0 1 N N N N N N -120.577 156.528 164.567 -1.196 -0.033 0.292 N10 9WY 16
9WY C9A C8 C 0 1 Y N N N N N -120.764 156.254 165.881 -1.811 1.178 0.053 C9A 9WY 17
9WY C9 C9 C 0 1 Y N N N N N -120.434 157.212 166.872 -1.052 2.343 -0.025 C9 9WY 18
9WY C8 C10 C 0 1 Y N N N N N -120.608 156.903 168.216 -1.670 3.550 -0.263 C8 9WY 19
9WY C8M C11 C 0 1 N N N N N N -120.254 157.956 169.269 -0.845 4.808 -0.347 C8M 9WY 20
9WY C7M C12 C 0 1 N N N N N N -121.314 155.297 170.072 -3.704 4.951 -0.689 C7M 9WY 21
9WY C6 C13 C 0 1 Y N N N N N -121.439 154.710 167.628 -3.817 2.495 -0.357 C6 9WY 22
9WY C5A C14 C 0 1 Y N N N N N -121.253 155.015 166.261 -3.212 1.246 -0.114 C5A 9WY 23
9WY N5 N2 N 0 1 N N N N N N -121.587 154.080 165.335 -3.968 0.142 -0.045 N5 9WY 24
9WY N1 N3 N 0 1 N N N N N N -120.768 155.863 162.336 -1.459 -2.352 0.581 N1 9WY 25
9WY C4A C15 C 0 1 N N N N N N -121.418 154.373 164.030 -3.425 -1.027 0.181 C4A 9WY 26
9WY C4 C16 C 0 1 N N N N N N -121.736 153.439 163.006 -4.228 -2.267 0.264 C4 9WY 27
9WY O4 O8 O 0 1 N N N N N N -122.248 152.199 163.327 -5.436 -2.250 0.125 O4 9WY 28
9WY N3 N4 N 0 1 N N N N N N -121.552 153.765 161.738 -3.561 -3.420 0.499 N3 9WY 29
9WY C2 C17 C 0 1 N N N N N N -121.077 154.952 161.414 -2.228 -3.436 0.641 C2 9WY 30
9WY O2 O9 O 0 1 N N N N N N -120.909 155.230 160.061 -1.689 -4.509 0.851 O2 9WY 31
9WY H1 H1 H 0 1 N N N N N N -118.250 163.764 164.233 5.672 0.346 0.584 H1 9WY 32
9WY H2 H2 H 0 1 N N N N N N -116.238 161.240 165.644 4.378 2.191 2.795 H2 9WY 33
9WY H3 H3 H 0 1 N N N N N N -118.308 160.977 159.089 5.947 -1.662 -0.870 H3 9WY 34
9WY H4 H4 H 0 1 N N N N N N -117.195 160.258 160.969 4.958 0.426 -1.476 H4 9WY 35
9WY H5 H5 H 0 1 N N N N N N -118.450 161.493 161.326 5.110 -0.666 -2.873 H5 9WY 36
9WY H6 H6 H 0 1 N N N N N N -120.047 159.792 161.959 2.827 0.364 -2.678 H6 9WY 37
9WY H7 H7 H 0 1 N N N N N N -119.387 157.574 161.852 1.765 -1.700 -3.007 H7 9WY 38
9WY H8 H8 H 0 1 N N N N N N -117.252 159.567 163.136 2.685 -1.317 -0.135 H8 9WY 39
9WY H9 H9 H 0 1 N N N N N N -120.785 158.564 164.532 0.497 -0.944 1.130 H9 9WY 40
9WY H10 H10 H 0 1 N N N N N N -120.355 157.789 162.970 0.623 0.816 0.899 H10 9WY 41
9WY H11 H11 H 0 1 N N N N N N -120.049 158.179 166.584 0.020 2.300 0.102 H11 9WY 42
9WY H12 H12 H 0 1 N N N N N N -121.137 158.578 169.477 -0.533 4.969 -1.379 H12 9WY 43
9WY H13 H13 H 0 1 N N N N N N -119.932 157.455 170.194 -1.441 5.656 -0.011 H13 9WY 44
9WY H14 H14 H 0 1 N N N N N N -119.439 158.591 168.893 0.035 4.708 0.287 H14 9WY 45
9WY H15 H15 H 0 1 N N N N N N -120.398 154.834 170.469 -3.748 5.130 -1.763 H15 9WY 46
9WY H16 H16 H 0 1 N N N N N N -121.539 156.211 170.641 -4.714 4.946 -0.279 H16 9WY 47
9WY H17 H17 H 0 1 N N N N N N -122.152 154.591 170.166 -3.122 5.740 -0.212 H17 9WY 48
9WY H18 H18 H 0 1 N N N N N N -121.836 153.749 167.919 -4.887 2.562 -0.486 H18 9WY 49
9WY H20 H20 H 0 1 N N N N N N -121.775 153.107 161.019 -4.056 -4.252 0.560 H20 9WY 50
9WY H21 H21 H 0 1 N N N N N N -118.364 157.642 163.424 0.681 0.489 -1.559 H21 9WY 51
9WY H22 H22 H 0 1 N N N N N N -118.375 157.251 165.449 0.620 -2.343 -0.922 H22 9WY 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9WY "O5'" "C5'" SING N N 1
9WY O2 C2 DOUB N N 2
9WY "C5'" "C4'" SING N N 3
9WY "O4'" "C4'" SING N N 4
9WY C2 N3 SING N N 5
9WY C2 N1 SING N N 6
9WY N3 C4 SING N N 7
9WY "C4'" "C3'" SING N N 8
9WY N1 C10 DOUB N N 9
9WY C4 O4 DOUB N N 10
9WY C4 C4A SING N N 11
9WY "C3'" "O3'" SING N N 12
9WY "C3'" "C2'" SING N N 13
9WY O1P P DOUB N N 14
9WY C10 C4A SING N N 15
9WY C10 N10 SING N N 16
9WY "O3'" P SING N N 17
9WY C4A N5 DOUB N N 18
9WY "C1'" "C2'" SING N N 19
9WY "C1'" N10 SING N N 20
9WY "C2'" "O2'" SING N N 21
9WY P O3P SING N N 22
9WY P O2P SING N N 23
9WY N10 C9A SING N N 24
9WY N5 C5A SING N N 25
9WY C9A C5A DOUB Y N 26
9WY C9A C9 SING Y N 27
9WY C5A C6 SING Y N 28
9WY C9 C8 DOUB Y N 29
9WY C6 C7 DOUB Y N 30
9WY C8 C7 SING Y N 31
9WY C8 C8M SING N N 32
9WY C7 C7M SING N N 33
9WY O3P H1 SING N N 34
9WY O2P H2 SING N N 35
9WY "O5'" H3 SING N N 36
9WY "C5'" H4 SING N N 37
9WY "C5'" H5 SING N N 38
9WY "C4'" H6 SING N N 39
9WY "O4'" H7 SING N N 40
9WY "C3'" H8 SING N N 41
9WY "C1'" H9 SING N N 42
9WY "C1'" H10 SING N N 43
9WY C9 H11 SING N N 44
9WY C8M H12 SING N N 45
9WY C8M H13 SING N N 46
9WY C8M H14 SING N N 47
9WY C7M H15 SING N N 48
9WY C7M H16 SING N N 49
9WY C7M H17 SING N N 50
9WY C6 H18 SING N N 51
9WY N3 H20 SING N N 52
9WY "C2'" H21 SING N N 53
9WY "O2'" H22 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9WY SMILES ACDLabs 12.01 C1=3C(=Nc2c(N1CC(C(C(CO)O)OP(O)(O)=O)O)cc(c(C)c2)C)C(=O)NC(N=3)=O
9WY InChI InChI 1.03 InChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(23)14(12(24)6-22)30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11?,12-,14+/m1/s1
9WY InChIKey InChI 1.03 XTUPYSORVVXTTQ-AOUZGSJDSA-N
9WY SMILES_CANONICAL CACTVS 3.385 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O[P](O)(O)=O)[C@H](O)CO)c2cc1C
9WY SMILES CACTVS 3.385 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O[P](O)(O)=O)[CH](O)CO)c2cc1C
9WY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC([C@@H]([C@@H](CO)O)OP(=O)(O)O)O
9WY SMILES "OpenEye OEToolkits" 2.0.6 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)OP(=O)(O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9WY "SYSTEMATIC NAME" ACDLabs 12.01 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-3-O-phosphono-D-ribitol
9WY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(3~{S},4~{R})-1-[7,8-dimethyl-2,4-bis(oxidanylidene)benzo[g]pteridin-10-yl]-2,4,5-tris(oxidanyl)pentan-3-yl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9WY 'Create component' 2017-06-20 RCSB
9WY 'Initial release' 2018-06-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9WY C10 C 9.594 -2.457 1
9WY C7 C 4.296 -3.988 2
9WY O3P O 9.795 4.293 3
9WY P P 8.295 4.293 4
9WY O1P O 8.295 5.793 5
9WY O2P O 6.795 4.293 6
9WY "O5'" O 4.398 5.043 7
9WY "C5'" C 5.697 4.293 8
9WY "C4'" C 5.697 2.793 9
9WY "O4'" O 4.398 2.043 10
9WY "C3'" C 6.996 2.043 11
9WY "O3'" O 8.295 2.793 12
9WY "C2'" C 6.996 0.543 13
9WY "O2'" O 5.697 -0.206 14
9WY "C1'" C 8.295 -0.206 15
9WY N10 N 8.295 -1.707 16
9WY C9A C 6.996 -2.457 17
9WY C9 C 5.655 -1.655 18
9WY C8 C 4.296 -2.425 19
9WY C8M C 3.000 -1.670 20
9WY C7M C 3.000 -4.743 21
9WY C6 C 5.655 -4.759 22
9WY C5A C 6.996 -3.957 23
9WY N5 N 8.295 -4.707 24
9WY N1 N 10.935 -1.655 25
9WY C4A C 9.594 -3.957 26
9WY C4 C 10.935 -4.759 27
9WY O4 O 10.918 -6.258 28
9WY N3 N 12.294 -3.988 29
9WY C2 C 12.294 -2.425 30
9WY O2 O 13.590 -1.670 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9WY "O5'" "C5'" SINGLE NONE 1
9WY O2 C2 DOUBLE NONE 2
9WY "C5'" "C4'" SINGLE NONE 3
9WY "C4'" "O4'" SINGLE BEGINDASH 4
9WY C2 N3 SINGLE NONE 5
9WY C2 N1 SINGLE NONE 6
9WY N3 C4 SINGLE NONE 7
9WY "C4'" "C3'" SINGLE NONE 8
9WY N1 C10 DOUBLE NONE 9
9WY C4 O4 DOUBLE NONE 10
9WY C4 C4A SINGLE NONE 11
9WY "C3'" "O3'" SINGLE BEGINWEDGE 12
9WY "C3'" "C2'" SINGLE NONE 13
9WY O1P P DOUBLE NONE 14
9WY C10 C4A SINGLE NONE 15
9WY C10 N10 SINGLE NONE 16
9WY "O3'" P SINGLE NONE 17
9WY C4A N5 DOUBLE NONE 18
9WY "C1'" "C2'" SINGLE NONE 19
9WY "C1'" N10 SINGLE NONE 20
9WY "C2'" "O2'" SINGLE BEGINDASH 21
9WY P O3P SINGLE NONE 22
9WY P O2P SINGLE NONE 23
9WY N10 C9A SINGLE NONE 24
9WY N5 C5A SINGLE NONE 25
9WY C9A C5A DOUBLE NONE 26
9WY C9A C9 SINGLE NONE 27
9WY C5A C6 SINGLE NONE 28
9WY C9 C8 DOUBLE NONE 29
9WY C6 C7 DOUBLE NONE 30
9WY C8 C7 SINGLE NONE 31
9WY C8 C8M SINGLE NONE 32
9WY C7 C7M SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9WY MurckoScaffold S1 scaffold 'O=c1nc2[nH]c3ccccc3nc-2c(=O)[nH]1' InChI=1S/C10H6N4O2/c15-9-7-8(13-10(16)14-9)12-6-4-2-1-3-5(6)11-7/h1-4H,(H2,12,13,14,15,16) HAUGRYOERYOXHX-UHFFFAOYSA-N
9WY phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9WY phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9WY C10 S1 1
9WY C7 S1 1
9WY N10 S1 1
9WY C9A S1 1
9WY C9 S1 1
9WY C8 S1 1
9WY C6 S1 1
9WY C5A S1 1
9WY N5 S1 1
9WY N1 S1 1
9WY C4A S1 1
9WY C4 S1 1
9WY O4 S1 1
9WY N3 S1 1
9WY C2 S1 1
9WY O2 S1 1
9WY C7 F1 1
9WY C6 F1 1
9WY C5A F1 1
9WY C9A F1 1
9WY C9 F1 1
9WY C8 F1 1
9WY O3P F2 1
9WY P F2 1
9WY O1P F2 1
9WY "O3'" F2 1
9WY O2P F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9WY
_pdbe_chem_comp_rdkit_properties.exactmw 456.105
_pdbe_chem_comp_rdkit_properties.amw 456.348
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.412
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 203.746
_pdbe_chem_comp_rdkit_properties.tpsa 208.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.725
_pdbe_chem_comp_rdkit_properties.CrippenMR 102.687
_pdbe_chem_comp_rdkit_properties.chi0v 15.305
_pdbe_chem_comp_rdkit_properties.chi1v 8.928
_pdbe_chem_comp_rdkit_properties.chi2v 3.761
_pdbe_chem_comp_rdkit_properties.chi3v 3.761
_pdbe_chem_comp_rdkit_properties.chi4v 2.593
_pdbe_chem_comp_rdkit_properties.chi0n 35.410
_pdbe_chem_comp_rdkit_properties.chi1n 17.456
_pdbe_chem_comp_rdkit_properties.chi2n 3.355
_pdbe_chem_comp_rdkit_properties.chi3n 3.355
_pdbe_chem_comp_rdkit_properties.chi4n 2.204
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.510
_pdbe_chem_comp_rdkit_properties.kappa1 8.121
_pdbe_chem_comp_rdkit_properties.kappa2 8.553
_pdbe_chem_comp_rdkit_properties.kappa3 4.881
_pdbe_chem_comp_rdkit_properties.Phi 2.241
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9WY UniChem PDBe 9WY
9WY UniChem PubChem 138753123
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9WY C10 1.220 2.234 -1.025 ETKDGv3 1
9WY C7 4.133 -0.982 1.727 ETKDGv3 2
9WY O3P -4.959 -2.280 0.782 ETKDGv3 3
9WY P -3.286 -2.347 1.039 ETKDGv3 4
9WY O1P -2.939 -1.640 2.331 ETKDGv3 5
9WY O2P -2.819 -3.968 1.161 ETKDGv3 6
9WY "O5'" -5.590 0.021 -1.131 ETKDGv3 7
9WY "C5'" -4.642 -0.542 -1.996 ETKDGv3 8
9WY "C4'" -3.261 0.090 -1.762 ETKDGv3 9
9WY "O4'" -3.355 1.483 -1.925 ETKDGv3 10
9WY "C3'" -2.697 -0.245 -0.355 ETKDGv3 11
9WY "O3'" -2.452 -1.642 -0.279 ETKDGv3 12
9WY "C2'" -1.377 0.526 -0.060 ETKDGv3 13
9WY "O2'" -0.984 0.333 1.276 ETKDGv3 14
9WY "C1'" -0.224 0.174 -1.032 ETKDGv3 15
9WY N10 1.026 0.854 -0.640 ETKDGv3 16
9WY C9A 2.058 0.215 0.167 ETKDGv3 17
9WY C9 1.938 -1.193 0.651 ETKDGv3 18
9WY C8 2.902 -1.758 1.402 ETKDGv3 19
9WY C8M 2.749 -3.181 1.874 ETKDGv3 20
9WY C7M 5.231 -1.592 2.557 ETKDGv3 21
9WY C6 4.238 0.288 1.307 ETKDGv3 22
9WY C5A 3.172 0.913 0.501 ETKDGv3 23
9WY N5 3.346 2.276 0.088 ETKDGv3 24
9WY N1 0.320 2.871 -1.722 ETKDGv3 25
9WY C4A 2.462 2.913 -0.615 ETKDGv3 26
9WY C4 2.670 4.311 -1.011 ETKDGv3 27
9WY O4 3.720 4.928 -0.687 ETKDGv3 28
9WY N3 1.655 4.965 -1.774 ETKDGv3 29
9WY C2 0.473 4.239 -2.128 ETKDGv3 30
9WY O2 -0.434 4.798 -2.798 ETKDGv3 31
9WY H1 -5.254 -1.437 1.208 ETKDGv3 32
9WY H2 -3.384 -4.340 1.885 ETKDGv3 33
9WY H3 -6.446 -0.444 -1.321 ETKDGv3 34
9WY H4 -4.589 -1.643 -1.845 ETKDGv3 35
9WY H5 -4.949 -0.358 -3.049 ETKDGv3 36
9WY H6 -2.572 -0.335 -2.528 ETKDGv3 37
9WY H7 -3.384 1.658 -2.902 ETKDGv3 38
9WY H8 -3.445 0.123 0.387 ETKDGv3 39
9WY H9 -0.498 0.493 -2.059 ETKDGv3 40
9WY H10 -0.087 -0.919 -1.120 ETKDGv3 41
9WY H11 1.065 -1.782 0.421 ETKDGv3 42
9WY H12 1.713 -3.557 1.735 ETKDGv3 43
9WY H13 3.441 -3.836 1.303 ETKDGv3 44
9WY H14 2.988 -3.251 2.955 ETKDGv3 45
9WY H15 6.152 -0.970 2.546 ETKDGv3 46
9WY H16 5.498 -2.593 2.158 ETKDGv3 47
9WY H17 4.888 -1.695 3.607 ETKDGv3 48
9WY H18 5.114 0.876 1.551 ETKDGv3 49
9WY H20 1.774 5.960 -2.069 ETKDGv3 50
9WY H21 -1.583 1.612 -0.168 ETKDGv3 51
9WY H22 -0.735 -0.620 1.382 ETKDGv3 52
#