data_9XZ
#
_chem_comp.id 9XZ
_chem_comp.name 3-(2-methyltetrazol-5-yl)-5-(3-thienyl)pyridin-2-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H10 N6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-03-08
_chem_comp.pdbx_modified_date 2015-05-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 258.302
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9XZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5ALT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9XZ C1 C1 C 0 1 Y N N N N N 12.702 11.776 19.494 -3.873 -0.844 -0.000 C1 9XZ 1
9XZ C2 C2 C 0 1 Y N N N N N 12.166 9.800 21.657 -0.223 0.157 -0.001 C2 9XZ 2
9XZ C3 C3 C 0 1 Y N N N N N 13.719 10.923 23.011 -1.187 -2.047 -0.000 C3 9XZ 3
9XZ C4 C4 C 0 1 Y N N N N N 13.302 12.476 18.478 -5.009 -0.150 0.001 C4 9XZ 4
9XZ C5 C5 C 0 1 Y N N N N N 14.862 11.914 20.316 -2.928 1.257 0.000 C5 9XZ 5
9XZ C6 C6 C 0 1 Y N N N N N 13.588 11.442 20.562 -2.714 -0.071 -0.001 C6 9XZ 6
9XZ C7 C7 C 0 1 Y N N N N N 13.186 10.720 21.751 -1.353 -0.665 -0.001 C7 9XZ 7
9XZ C8 C8 C 0 1 Y N N N N N 11.726 9.113 22.773 1.032 -0.446 -0.001 C8 9XZ 8
9XZ C9 C9 C 0 1 Y N N N N N 12.332 9.384 23.999 1.113 -1.846 -0.001 C9 9XZ 9
9XZ C10 C10 C 0 1 Y N N N N N 10.682 8.151 22.558 2.265 0.380 -0.002 C10 9XZ 10
9XZ C11 C11 C 0 1 N N N N N N 8.826 5.988 20.615 5.753 0.914 0.005 C11 9XZ 11
9XZ N12 N12 N 0 1 Y N N N N N 13.315 10.289 24.117 0.016 -2.586 0.000 N12 9XZ 12
9XZ N13 N13 N 0 1 Y N N N N N 9.892 7.605 23.542 2.331 1.719 -0.003 N13 9XZ 13
9XZ N14 N14 N 0 1 Y N N N N N 10.431 7.659 21.337 3.507 -0.060 0.003 N14 9XZ 14
9XZ N15 N15 N 0 1 Y N N N N N 9.101 6.739 22.945 3.581 2.040 -0.004 N15 9XZ 15
9XZ N16 N16 N 0 1 Y N N N N N 9.452 6.809 21.647 4.289 0.965 0.000 N16 9XZ 16
9XZ N17 N17 N 0 1 N N N N N N 11.928 8.717 25.163 2.357 -2.462 -0.001 N17 9XZ 17
9XZ S18 S18 S 0 1 Y N N N N N 14.954 12.734 18.812 -4.658 1.572 0.001 S18 9XZ 18
9XZ H1 H1 H 0 1 N N N N N N 11.657 11.503 19.486 -3.852 -1.924 0.004 H1 9XZ 19
9XZ H4 H4 H 0 1 N N N N N N 12.796 12.818 17.587 -5.999 -0.582 0.001 H4 9XZ 20
9XZ H2 H2 H 0 1 N N N N N N 11.704 9.613 20.699 -0.321 1.233 -0.006 H2 9XZ 21
9XZ H3 H3 H 0 1 N N N N N N 14.517 11.644 23.109 -2.057 -2.687 -0.000 H3 9XZ 22
9XZ H5 H5 H 0 1 N N N N N N 15.698 11.783 20.988 -2.157 2.012 -0.000 H5 9XZ 23
9XZ H171 H171 H 0 0 N N N N N N 12.469 9.042 25.939 3.165 -1.924 -0.001 H171 9XZ 24
9XZ H172 H172 H 0 0 N N N N N N 10.959 8.899 25.332 2.419 -3.430 -0.000 H172 9XZ 25
9XZ H111 H111 H 0 0 N N N N N N 9.290 6.205 19.642 6.119 0.896 -1.022 H111 9XZ 26
9XZ H112 H112 H 0 0 N N N N N N 8.965 4.924 20.859 6.145 1.794 0.515 H112 9XZ 27
9XZ H113 H113 H 0 0 N N N N N N 7.751 6.216 20.567 6.084 0.015 0.525 H113 9XZ 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9XZ C1 C4 DOUB Y N 1
9XZ C1 C6 SING Y N 2
9XZ C2 C7 SING Y N 3
9XZ C2 C8 DOUB Y N 4
9XZ C3 C7 DOUB Y N 5
9XZ C3 N12 SING Y N 6
9XZ C4 S18 SING Y N 7
9XZ C5 C6 DOUB Y N 8
9XZ C5 S18 SING Y N 9
9XZ C6 C7 SING N N 10
9XZ C8 C9 SING Y N 11
9XZ C8 C10 SING N N 12
9XZ C9 N12 DOUB Y N 13
9XZ C9 N17 SING N N 14
9XZ C10 N13 SING Y N 15
9XZ C10 N14 DOUB Y N 16
9XZ C11 N16 SING N N 17
9XZ N13 N15 DOUB Y N 18
9XZ N14 N16 SING Y N 19
9XZ N15 N16 SING Y N 20
9XZ C1 H1 SING N N 21
9XZ C4 H4 SING N N 22
9XZ C2 H2 SING N N 23
9XZ C3 H3 SING N N 24
9XZ C5 H5 SING N N 25
9XZ N17 H171 SING N N 26
9XZ N17 H172 SING N N 27
9XZ C11 H111 SING N N 28
9XZ C11 H112 SING N N 29
9XZ C11 H113 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9XZ InChI InChI 1.03 InChI=1S/C11H10N6S/c1-17-15-11(14-16-17)9-4-8(5-13-10(9)12)7-2-3-18-6-7/h2-6H,1H3,(H2,12,13)
9XZ InChIKey InChI 1.03 SYTWVNLAKXLKOD-UHFFFAOYSA-N
9XZ SMILES_CANONICAL CACTVS 3.385 Cn1nnc(n1)c2cc(cnc2N)c3cscc3
9XZ SMILES CACTVS 3.385 Cn1nnc(n1)c2cc(cnc2N)c3cscc3
9XZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cn1nc(nn1)c2cc(cnc2N)c3ccsc3
9XZ SMILES "OpenEye OEToolkits" 1.7.6 Cn1nc(nn1)c2cc(cnc2N)c3ccsc3
#
_pdbx_chem_comp_identifier.comp_id 9XZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.7.6
_pdbx_chem_comp_identifier.identifier 3-(2-methyl-1,2,3,4-tetrazol-5-yl)-5-thiophen-3-yl-pyridin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9XZ 'Create component' 2015-03-08 EBI
9XZ 'Initial release' 2015-05-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9XZ C1 C 5.217 -4.601 1
9XZ C2 C 6.673 -0.859 2
9XZ C3 C 7.972 -3.109 3
9XZ C4 C 3.750 -4.913 4
9XZ C5 C 4.004 -2.499 5
9XZ C6 C 5.374 -3.109 6
9XZ C7 C 6.673 -2.359 7
9XZ C8 C 7.972 -0.109 8
9XZ C9 C 9.271 -0.859 9
9XZ C10 C 7.972 1.391 10
9XZ C11 C 9.604 4.913 11
9XZ N12 N 9.271 -2.359 12
9XZ N13 N 6.758 2.273 13
9XZ N14 N 9.186 2.273 14
9XZ N15 N 7.222 3.699 15
9XZ N16 N 8.722 3.699 16
9XZ N17 N 10.570 -0.109 17
9XZ S18 S 3.000 -3.614 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9XZ C1 C4 DOUBLE NONE 1
9XZ C1 C6 SINGLE NONE 2
9XZ C2 C7 DOUBLE NONE 3
9XZ C2 C8 SINGLE NONE 4
9XZ C3 C7 SINGLE NONE 5
9XZ C3 N12 DOUBLE NONE 6
9XZ C4 S18 SINGLE NONE 7
9XZ C5 C6 DOUBLE NONE 8
9XZ C5 S18 SINGLE NONE 9
9XZ C6 C7 SINGLE NONE 10
9XZ C8 C9 DOUBLE NONE 11
9XZ C8 C10 SINGLE NONE 12
9XZ C9 N12 SINGLE NONE 13
9XZ C9 N17 SINGLE NONE 14
9XZ C10 N13 SINGLE NONE 15
9XZ C10 N14 DOUBLE NONE 16
9XZ C11 N16 SINGLE NONE 17
9XZ N13 N15 DOUBLE NONE 18
9XZ N14 N16 SINGLE NONE 19
9XZ N15 N16 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9XZ MurckoScaffold S1 scaffold 'c1cc(-c2cncc(-c3nn[nH]n3)c2)cs1' InChI=1S/C10H7N5S/c1-2-16-6-7(1)8-3-9(5-11-4-8)10-12-14-15-13-10/h1-6H,(H,12,13,14,15) RYRWOPUXYSYMDS-UHFFFAOYSA-N
9XZ pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
9XZ thiophen F2 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9XZ C1 S1 1
9XZ C2 S1 1
9XZ C3 S1 1
9XZ C4 S1 1
9XZ C5 S1 1
9XZ C6 S1 1
9XZ C7 S1 1
9XZ C8 S1 1
9XZ C9 S1 1
9XZ C10 S1 1
9XZ N12 S1 1
9XZ N13 S1 1
9XZ N14 S1 1
9XZ N15 S1 1
9XZ N16 S1 1
9XZ S18 S1 1
9XZ C3 F1 1
9XZ C7 F1 1
9XZ C2 F1 1
9XZ C8 F1 1
9XZ C9 F1 1
9XZ N12 F1 1
9XZ C4 F2 1
9XZ C1 F2 1
9XZ C6 F2 1
9XZ C5 F2 1
9XZ S18 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9XZ
_pdbe_chem_comp_rdkit_properties.exactmw 258.069
_pdbe_chem_comp_rdkit_properties.amw 258.310
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.091
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 121.260
_pdbe_chem_comp_rdkit_properties.tpsa 82.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.442
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.286
_pdbe_chem_comp_rdkit_properties.chi0v 9.408
_pdbe_chem_comp_rdkit_properties.chi1v 5.416
_pdbe_chem_comp_rdkit_properties.chi2v 2.525
_pdbe_chem_comp_rdkit_properties.chi3v 2.525
_pdbe_chem_comp_rdkit_properties.chi4v 1.714
_pdbe_chem_comp_rdkit_properties.chi0n 18.592
_pdbe_chem_comp_rdkit_properties.chi1n 9.494
_pdbe_chem_comp_rdkit_properties.chi2n 2.015
_pdbe_chem_comp_rdkit_properties.chi3n 2.015
_pdbe_chem_comp_rdkit_properties.chi4n 1.254
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.280
_pdbe_chem_comp_rdkit_properties.kappa1 4.433
_pdbe_chem_comp_rdkit_properties.kappa2 4.189
_pdbe_chem_comp_rdkit_properties.kappa3 1.841
_pdbe_chem_comp_rdkit_properties.Phi 1.032
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9XZ UniChem ChEMBL CHEMBL4588560
9XZ UniChem PDBe 9XZ
9XZ UniChem ZINC ZINC000230472775
9XZ UniChem PubChem 91754985
9XZ UniChem BindingDb 50534974
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9XZ C1 4.193 0.523 -0.619 ETKDGv3 1
9XZ C2 0.472 0.144 -0.014 ETKDGv3 2
9XZ C3 2.025 -1.679 -0.387 ETKDGv3 3
9XZ C4 5.089 1.468 -0.348 ETKDGv3 4
9XZ C5 2.821 1.798 0.824 ETKDGv3 5
9XZ C6 2.879 0.705 0.054 ETKDGv3 6
9XZ C7 1.754 -0.252 -0.104 ETKDGv3 7
9XZ C8 -0.641 -0.822 -0.196 ETKDGv3 8
9XZ C9 -0.336 -2.124 -0.417 ETKDGv3 9
9XZ C10 -2.028 -0.306 -0.171 ETKDGv3 10
9XZ C11 -4.659 1.719 0.955 ETKDGv3 11
9XZ N12 1.043 -2.520 -0.522 ETKDGv3 12
9XZ N13 -3.111 -0.832 -0.946 ETKDGv3 13
9XZ N14 -2.387 0.735 0.511 ETKDGv3 14
9XZ N15 -4.116 -0.097 -0.699 ETKDGv3 15
9XZ N16 -3.730 0.912 0.182 ETKDGv3 16
9XZ N17 -1.337 -3.144 -0.495 ETKDGv3 17
9XZ S18 4.376 2.656 0.761 ETKDGv3 18
9XZ H1 4.413 -0.295 -1.292 ETKDGv3 19
9XZ H4 6.091 1.502 -0.754 ETKDGv3 20
9XZ H2 0.234 1.187 0.153 ETKDGv3 21
9XZ H3 3.040 -2.044 -0.461 ETKDGv3 22
9XZ H5 1.972 2.105 1.421 ETKDGv3 23
9XZ H171 -2.299 -3.013 -0.114 ETKDGv3 24
9XZ H172 -1.064 -4.109 -0.784 ETKDGv3 25
9XZ H111 -5.002 1.144 1.841 ETKDGv3 26
9XZ H112 -5.535 1.987 0.329 ETKDGv3 27
9XZ H113 -4.157 2.649 1.293 ETKDGv3 28
#