data_9YF
#
_chem_comp.id 9YF
_chem_comp.name
"(2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C44 H85 O13 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-08-30
_chem_comp.pdbx_modified_date 2018-11-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 853.112
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9YF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6ADQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9YF P P1 P 0 1 N N N N N N 152.881 196.457 201.582 -0.854 -4.045 0.615 P 9YF 1
9YF O1 O1 O 0 1 N N N N N N 152.433 197.814 202.066 -0.048 -5.212 1.379 O1 9YF 2
9YF O2 O2 O 0 1 N N N N N N 153.268 195.501 202.864 0.100 -3.373 -0.494 O2 9YF 3
9YF O3 O3 O 0 1 N N N N N N 152.967 193.297 200.922 2.569 -4.741 -0.416 O3 9YF 4
9YF O4 O4 O 0 1 N N N N N N 153.070 190.781 202.294 4.071 -4.869 -2.805 O4 9YF 5
9YF C C1 C 0 1 N N R N N N 155.313 195.189 199.130 -2.461 -1.913 3.548 C 9YF 6
9YF O O5 O 0 1 N N N N N N 154.183 196.635 200.602 -1.313 -2.926 1.678 O 9YF 7
9YF C1 C2 C 0 1 N N N N N N 154.092 196.077 199.328 -2.249 -3.186 2.726 C1 9YF 8
9YF C10 C3 C 0 1 N N N N N N 156.804 198.647 199.163 -6.659 -0.026 2.023 C10 9YF 9
9YF C11 C4 C 0 1 N N N N N N 157.445 198.945 197.816 -7.391 1.014 1.171 C11 9YF 10
9YF C12 C5 C 0 1 N N N N N N 157.010 200.293 197.252 -8.901 0.833 1.331 C12 9YF 11
9YF C13 C6 C 0 1 N N N N N N 158.105 201.346 197.391 -9.632 1.873 0.479 C13 9YF 12
9YF C14 C7 C 0 1 N N N N N N 158.548 201.907 196.043 -11.143 1.692 0.639 C14 9YF 13
9YF C15 C8 C 0 1 N N N N N N 159.103 200.830 195.118 -11.874 2.732 -0.213 C15 9YF 14
9YF C16 C9 C 0 1 N N N N N N 158.351 200.779 193.795 -13.385 2.551 -0.053 C16 9YF 15
9YF C17 C10 C 0 1 N N N N N N 159.066 201.589 192.724 -14.116 3.591 -0.904 C17 9YF 16
9YF C18 C11 C 0 1 N N N N N N 158.369 202.913 192.431 -15.627 3.410 -0.744 C18 9YF 17
9YF C19 C12 C 0 1 N N N N N N 159.119 204.096 193.038 -16.358 4.450 -1.596 C19 9YF 18
9YF C2 C13 C 0 1 N N N N N N 154.126 194.400 202.700 0.589 -4.082 -1.634 C2 9YF 19
9YF C20 C14 C 0 1 N N N N N N 158.397 205.422 192.814 -17.869 4.269 -1.436 C20 9YF 20
9YF C21 C15 C 0 1 N N N N N N 158.917 206.162 191.585 -18.600 5.308 -2.288 C21 9YF 21
9YF C22 C16 C 0 1 N N N N N N 157.833 207.004 190.915 -20.111 5.128 -2.128 C22 9YF 22
9YF C23 C17 C 0 1 N N N N N N 156.885 206.160 190.067 -20.842 6.167 -2.980 C23 9YF 23
9YF C24 C18 C 0 1 N N N N N N 154.930 193.981 198.282 -1.110 -1.399 4.049 C24 9YF 24
9YF C25 C19 C 0 1 N N N N N N 152.830 193.103 197.787 1.023 -0.768 3.192 C25 9YF 25
9YF C26 C20 C 0 1 N N N N N N 151.590 193.959 197.566 2.010 -0.555 2.073 C26 9YF 26
9YF C27 C21 C 0 1 N N N N N N 151.770 194.928 196.404 3.331 -0.043 2.649 C27 9YF 27
9YF C28 C22 C 0 1 N N N N N N 150.713 194.734 195.325 4.333 0.173 1.512 C28 9YF 28
9YF C29 C23 C 0 1 N N N N N N 150.882 195.733 194.187 5.654 0.686 2.088 C29 9YF 29
9YF C3 C24 C 0 1 N N S N N N 153.282 193.178 202.283 2.118 -4.096 -1.608 C3 9YF 30
9YF C30 C25 C 0 1 N N N N N N 150.953 195.054 192.820 6.656 0.901 0.951 C30 9YF 31
9YF C31 C26 C 0 1 N N N N N N 151.964 193.912 192.784 7.978 1.414 1.527 C31 9YF 32
9YF C32 C27 C 0 1 N N N N N N 153.148 194.184 191.861 8.979 1.630 0.391 C32 9YF 33
9YF C33 C28 C 0 1 N N S N N N 153.176 193.240 190.662 10.301 2.142 0.966 C33 9YF 34
9YF C34 C29 C 0 1 N N N N N N 152.773 193.979 189.390 10.923 1.063 1.855 C34 9YF 35
9YF C35 C30 C 0 1 N N N N N N 154.549 192.594 190.497 11.260 2.476 -0.178 C35 9YF 36
9YF C36 C31 C 0 1 N N N N N N 154.643 191.698 189.265 12.533 3.105 0.391 C36 9YF 37
9YF C37 C32 C 0 1 N N N N N N 155.452 190.438 189.551 13.493 3.439 -0.754 C37 9YF 38
9YF C38 C33 C 0 1 N N N N N N 155.418 189.447 188.394 14.766 4.068 -0.185 C38 9YF 39
9YF C39 C34 C 0 1 N N N N N N 154.135 188.625 188.364 15.725 4.401 -1.329 C39 9YF 40
9YF C4 C35 C 0 1 N N R N N N 153.984 191.827 202.500 2.642 -4.856 -2.829 C4 9YF 41
9YF C40 C36 C 0 1 N N N N N N 154.374 187.179 187.943 16.999 5.030 -0.760 C40 9YF 42
9YF C41 C37 C 0 1 N N N N N N 153.455 186.682 186.834 17.958 5.364 -1.904 C41 9YF 43
9YF C42 C38 C 0 1 N N N N N N 152.669 185.441 187.240 19.232 5.993 -1.335 C42 9YF 44
9YF C43 C39 C 0 1 N N N N N N 151.874 184.855 186.076 20.191 6.326 -2.480 C43 9YF 45
9YF C5 C40 C 0 1 N N N N N N 154.527 191.716 203.924 2.159 -4.165 -4.106 C5 9YF 46
9YF C6 C41 C 0 1 N N R N N N 155.538 192.838 204.175 0.630 -4.152 -4.131 C6 9YF 47
9YF C7 C42 C 0 1 N N R N N N 154.876 194.216 204.032 0.106 -3.392 -2.911 C7 9YF 48
9YF C8 C43 C 0 1 N N N N N N 157.407 196.203 199.312 -4.429 -0.869 2.701 C8 9YF 49
9YF C9 C44 C 0 1 N N N N N N 157.589 197.585 199.920 -5.149 0.155 1.863 C9 9YF 50
9YF O10 O6 O 0 1 N N N N N N 158.198 195.355 199.539 -5.059 -1.662 3.360 O10 9YF 51
9YF O11 O7 O 0 1 N N N N N N 153.741 193.451 198.781 -0.212 -1.218 2.922 O11 9YF 52
9YF O12 O8 O 0 1 N N N N N N 153.026 192.148 197.120 1.344 -0.533 4.333 O12 9YF 53
9YF O5 O9 O 0 1 N N N N N N 155.146 190.468 204.086 2.648 -4.875 -5.245 O5 9YF 54
9YF O6 O10 O 0 1 N N N N N N 156.556 192.749 203.216 0.141 -5.494 -4.102 O6 9YF 55
9YF O7 O11 O 0 1 N N N N N N 155.873 195.203 204.131 -1.323 -3.379 -2.934 O7 9YF 56
9YF O8 O12 O 0 1 N N N N N N 151.777 195.804 200.792 -2.047 -4.620 -0.043 O8 9YF 57
9YF O9 O13 O 0 1 N N N N N N 156.311 195.932 198.491 -3.087 -0.900 2.718 O9 9YF 58
9YF H1 H1 H 0 1 N N N N N N 151.545 197.978 201.772 0.748 -4.906 1.835 H1 9YF 59
9YF H2 H2 H 0 1 N N N N N N 152.548 194.135 200.766 3.532 -4.786 -0.333 H2 9YF 60
9YF H3 H3 H 0 1 N N N N N N 153.506 189.948 202.429 4.472 -5.335 -3.551 H3 9YF 61
9YF H4 H4 H 0 1 N N N N N N 155.661 194.838 200.113 -3.104 -2.133 4.400 H4 9YF 62
9YF H5 H5 H 0 1 N N N N N N 154.079 196.873 198.569 -1.861 -3.975 3.372 H5 9YF 63
9YF H6 H6 H 0 1 N N N N N N 153.174 195.477 199.245 -3.198 -3.503 2.296 H6 9YF 64
9YF H7 H7 H 0 1 N N N N N N 156.779 199.570 199.761 -6.932 0.105 3.070 H7 9YF 65
9YF H8 H8 H 0 1 N N N N N N 155.777 198.287 199.001 -6.942 -1.026 1.696 H8 9YF 66
9YF H9 H9 H 0 1 N N N N N N 157.158 198.156 197.106 -7.108 2.015 1.498 H9 9YF 67
9YF H10 H10 H 0 1 N N N N N N 158.538 198.949 197.938 -7.118 0.883 0.124 H10 9YF 68
9YF H11 H11 H 0 1 N N N N N N 156.117 200.635 197.795 -9.184 -0.168 1.004 H11 9YF 69
9YF H12 H12 H 0 1 N N N N N N 156.767 200.171 196.186 -9.174 0.964 2.378 H12 9YF 70
9YF H13 H13 H 0 1 N N N N N N 158.974 200.888 197.886 -9.350 2.874 0.806 H13 9YF 71
9YF H14 H14 H 0 1 N N N N N N 157.724 202.172 198.009 -9.360 1.742 -0.568 H14 9YF 72
9YF H15 H15 H 0 1 N N N N N N 159.329 202.662 196.214 -11.426 0.691 0.312 H15 9YF 73
9YF H16 H16 H 0 1 N N N N N N 157.682 202.379 195.555 -11.416 1.823 1.686 H16 9YF 74
9YF H17 H17 H 0 1 N N N N N N 159.015 199.853 195.616 -11.592 3.733 0.114 H17 9YF 75
9YF H18 H18 H 0 1 N N N N N N 160.163 201.045 194.917 -11.601 2.601 -1.260 H18 9YF 76
9YF H19 H19 H 0 1 N N N N N N 157.341 201.189 193.940 -13.668 1.550 -0.379 H19 9YF 77
9YF H20 H20 H 0 1 N N N N N N 158.278 199.733 193.464 -13.658 2.682 0.994 H20 9YF 78
9YF H21 H21 H 0 1 N N N N N N 159.101 200.996 191.798 -13.834 4.591 -0.578 H21 9YF 79
9YF H22 H22 H 0 1 N N N N N N 160.091 201.798 193.065 -13.843 3.460 -1.951 H22 9YF 80
9YF H23 H23 H 0 1 N N N N N N 158.310 203.050 191.341 -15.910 2.409 -1.071 H23 9YF 81
9YF H24 H24 H 0 1 N N N N N N 157.353 202.881 192.852 -15.900 3.541 0.303 H24 9YF 82
9YF H25 H25 H 0 1 N N N N N N 159.224 203.930 194.120 -16.076 5.450 -1.270 H25 9YF 83
9YF H26 H26 H 0 1 N N N N N N 160.116 204.155 192.578 -16.085 4.319 -2.643 H26 9YF 84
9YF H27 H27 H 0 1 N N N N N N 154.863 194.602 201.909 0.216 -5.107 -1.611 H27 9YF 85
9YF H28 H28 H 0 1 N N N N N N 158.543 206.059 193.699 -18.152 3.268 -1.763 H28 9YF 86
9YF H29 H29 H 0 1 N N N N N N 157.324 205.222 192.679 -18.142 4.400 -0.389 H29 9YF 87
9YF H30 H30 H 0 1 N N N N N N 159.291 205.424 190.860 -18.317 6.309 -1.961 H30 9YF 88
9YF H31 H31 H 0 1 N N N N N N 159.740 206.824 191.892 -18.327 5.177 -3.335 H31 9YF 89
9YF H32 H32 H 0 1 N N N N N N 158.315 207.752 190.268 -20.394 4.127 -2.455 H32 9YF 90
9YF H33 H33 H 0 1 N N N N N N 157.250 207.515 191.695 -20.384 5.259 -1.081 H33 9YF 91
9YF H34 H34 H 0 1 N N N N N N 156.126 206.810 189.608 -20.559 7.168 -2.653 H34 9YF 92
9YF H35 H35 H 0 1 N N N N N N 157.456 205.649 189.278 -20.569 6.036 -4.027 H35 9YF 93
9YF H36 H36 H 0 1 N N N N N N 156.390 205.412 190.704 -21.918 6.038 -2.866 H36 9YF 94
9YF H37 H37 H 0 1 N N N N N N 155.725 193.223 198.335 -1.250 -0.445 4.558 H37 9YF 95
9YF H38 H38 H 0 1 N N N N N N 154.788 194.291 197.236 -0.680 -2.121 4.743 H38 9YF 96
9YF H39 H39 H 0 1 N N N N N N 151.387 194.535 198.481 2.181 -1.499 1.556 H39 9YF 97
9YF H40 H40 H 0 1 N N N N N N 150.736 193.300 197.351 1.610 0.177 1.371 H40 9YF 98
9YF H41 H41 H 0 1 N N N N N N 152.763 194.768 195.960 3.160 0.901 3.166 H41 9YF 99
9YF H42 H42 H 0 1 N N N N N N 151.701 195.957 196.787 3.730 -0.775 3.351 H42 9YF 100
9YF H43 H43 H 0 1 N N N N N N 149.717 194.868 195.773 4.504 -0.771 0.995 H43 9YF 101
9YF H44 H44 H 0 1 N N N N N N 150.799 193.715 194.921 3.934 0.905 0.810 H44 9YF 102
9YF H45 H45 H 0 1 N N N N N N 151.811 196.299 194.349 5.483 1.630 2.605 H45 9YF 103
9YF H46 H46 H 0 1 N N N N N N 150.026 196.424 194.194 6.053 -0.047 2.790 H46 9YF 104
9YF H47 H47 H 0 1 N N N N N N 152.359 193.182 202.882 2.491 -3.072 -1.631 H47 9YF 105
9YF H48 H48 H 0 1 N N N N N N 151.242 195.804 192.069 6.827 -0.043 0.434 H48 9YF 106
9YF H49 H49 H 0 1 N N N N N N 149.959 194.652 192.574 6.257 1.633 0.249 H49 9YF 107
9YF H50 H50 H 0 1 N N N N N N 151.452 193.003 192.436 7.807 2.358 2.045 H50 9YF 108
9YF H51 H51 H 0 1 N N N N N N 152.345 193.751 193.803 8.377 0.682 2.229 H51 9YF 109
9YF H52 H52 H 0 1 N N N N N N 154.079 194.057 192.433 9.150 0.686 -0.127 H52 9YF 110
9YF H53 H53 H 0 1 N N N N N N 153.081 195.219 191.495 8.580 2.362 -0.311 H53 9YF 111
9YF H54 H54 H 0 1 N N N N N N 152.442 192.441 190.840 10.116 3.039 1.558 H54 9YF 112
9YF H55 H55 H 0 1 N N N N N N 151.782 194.437 189.529 11.108 0.167 1.263 H55 9YF 113
9YF H56 H56 H 0 1 N N N N N N 153.512 194.764 189.172 11.865 1.429 2.265 H56 9YF 114
9YF H57 H57 H 0 1 N N N N N N 152.734 193.269 188.550 10.240 0.826 2.670 H57 9YF 115
9YF H58 H58 H 0 1 N N N N N N 154.760 191.986 191.389 11.515 1.563 -0.717 H58 9YF 116
9YF H59 H59 H 0 1 N N N N N N 155.303 193.390 190.409 10.781 3.179 -0.860 H59 9YF 117
9YF H60 H60 H 0 1 N N N N N N 155.129 192.258 188.452 12.279 4.018 0.929 H60 9YF 118
9YF H61 H61 H 0 1 N N N N N N 153.628 191.408 188.955 13.012 2.402 1.073 H61 9YF 119
9YF H62 H62 H 0 1 N N N N N N 155.039 189.949 190.446 13.748 2.526 -1.292 H62 9YF 120
9YF H63 H63 H 0 1 N N N N N N 156.497 190.725 189.739 13.014 4.141 -1.436 H63 9YF 121
9YF H64 H64 H 0 1 N N N N N N 156.273 188.762 188.492 14.511 4.980 0.354 H64 9YF 122
9YF H65 H65 H 0 1 N N N N N N 155.501 190.005 187.450 15.245 3.365 0.498 H65 9YF 123
9YF H66 H66 H 0 1 N N N N N N 153.436 189.088 187.652 15.980 3.488 -1.867 H66 9YF 124
9YF H67 H67 H 0 1 N N N N N N 153.690 188.630 189.370 15.247 5.104 -2.011 H67 9YF 125
9YF H68 H68 H 0 1 N N N N N N 154.824 191.749 201.794 2.269 -5.880 -2.806 H68 9YF 126
9YF H69 H69 H 0 1 N N N N N N 154.228 186.536 188.824 16.744 5.943 -0.221 H69 9YF 127
9YF H70 H70 H 0 1 N N N N N N 155.413 187.091 187.593 17.478 4.327 -0.078 H70 9YF 128
9YF H71 H71 H 0 1 N N N N N N 154.066 186.440 185.952 18.213 4.451 -2.443 H71 9YF 129
9YF H72 H72 H 0 1 N N N N N N 152.744 187.482 186.580 17.479 6.067 -2.586 H72 9YF 130
9YF H73 H73 H 0 1 N N N N N N 151.970 185.712 188.045 18.977 6.906 -0.797 H73 9YF 131
9YF H74 H74 H 0 1 N N N N N N 153.373 184.680 187.607 19.710 5.290 -0.653 H74 9YF 132
9YF H75 H75 H 0 1 N N N N N N 151.326 183.965 186.417 20.445 5.414 -3.018 H75 9YF 133
9YF H76 H76 H 0 1 N N N N N N 151.160 185.605 185.705 19.712 7.029 -3.162 H76 9YF 134
9YF H77 H77 H 0 1 N N N N N N 152.563 184.573 185.266 21.098 6.774 -2.074 H77 9YF 135
9YF H78 H78 H 0 1 N N N N N N 153.692 191.828 204.631 2.532 -3.141 -4.128 H78 9YF 136
9YF H79 H79 H 0 1 N N N N N N 155.944 192.737 205.192 0.286 -3.659 -5.041 H79 9YF 137
9YF H80 H80 H 0 1 N N N N N N 154.151 194.334 204.851 0.479 -2.368 -2.933 H80 9YF 138
9YF H81 H81 H 0 1 N N N N N N 158.657 197.847 199.894 -4.876 0.024 0.816 H81 9YF 139
9YF H82 H82 H 0 1 N N N N N N 157.242 197.563 200.964 -4.866 1.156 2.189 H82 9YF 140
9YF H83 H83 H 0 1 N N N N N N 155.485 190.395 204.970 2.380 -4.492 -6.092 H83 9YF 141
9YF H84 H84 H 0 1 N N N N N N 157.190 193.441 203.362 0.434 -6.036 -4.847 H84 9YF 142
9YF H85 H85 H 0 1 N N N N N N 156.342 195.098 204.950 -1.699 -2.955 -3.718 H85 9YF 143
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9YF C43 C42 SING N N 1
9YF C41 C42 SING N N 2
9YF C41 C40 SING N N 3
9YF C40 C39 SING N N 4
9YF C39 C38 SING N N 5
9YF C38 C37 SING N N 6
9YF C36 C37 SING N N 7
9YF C36 C35 SING N N 8
9YF C34 C33 SING N N 9
9YF C23 C22 SING N N 10
9YF C35 C33 SING N N 11
9YF C33 C32 SING N N 12
9YF C22 C21 SING N N 13
9YF C21 C20 SING N N 14
9YF C32 C31 SING N N 15
9YF C18 C17 SING N N 16
9YF C18 C19 SING N N 17
9YF C17 C16 SING N N 18
9YF C31 C30 SING N N 19
9YF C20 C19 SING N N 20
9YF C30 C29 SING N N 21
9YF C16 C15 SING N N 22
9YF C29 C28 SING N N 23
9YF C15 C14 SING N N 24
9YF C28 C27 SING N N 25
9YF C14 C13 SING N N 26
9YF C27 C26 SING N N 27
9YF O12 C25 DOUB N N 28
9YF C12 C13 SING N N 29
9YF C12 C11 SING N N 30
9YF C26 C25 SING N N 31
9YF C25 O11 SING N N 32
9YF C11 C10 SING N N 33
9YF C24 O11 SING N N 34
9YF C24 C SING N N 35
9YF O9 C SING N N 36
9YF O9 C8 SING N N 37
9YF C C1 SING N N 38
9YF C10 C9 SING N N 39
9YF C8 O10 DOUB N N 40
9YF C8 C9 SING N N 41
9YF C1 O SING N N 42
9YF O P SING N N 43
9YF O8 P DOUB N N 44
9YF O3 C3 SING N N 45
9YF P O1 SING N N 46
9YF P O2 SING N N 47
9YF C3 C4 SING N N 48
9YF C3 C2 SING N N 49
9YF O4 C4 SING N N 50
9YF C4 C5 SING N N 51
9YF C2 O2 SING N N 52
9YF C2 C7 SING N N 53
9YF O6 C6 SING N N 54
9YF C5 O5 SING N N 55
9YF C5 C6 SING N N 56
9YF C7 O7 SING N N 57
9YF C7 C6 SING N N 58
9YF O1 H1 SING N N 59
9YF O3 H2 SING N N 60
9YF O4 H3 SING N N 61
9YF C H4 SING N N 62
9YF C1 H5 SING N N 63
9YF C1 H6 SING N N 64
9YF C10 H7 SING N N 65
9YF C10 H8 SING N N 66
9YF C11 H9 SING N N 67
9YF C11 H10 SING N N 68
9YF C12 H11 SING N N 69
9YF C12 H12 SING N N 70
9YF C13 H13 SING N N 71
9YF C13 H14 SING N N 72
9YF C14 H15 SING N N 73
9YF C14 H16 SING N N 74
9YF C15 H17 SING N N 75
9YF C15 H18 SING N N 76
9YF C16 H19 SING N N 77
9YF C16 H20 SING N N 78
9YF C17 H21 SING N N 79
9YF C17 H22 SING N N 80
9YF C18 H23 SING N N 81
9YF C18 H24 SING N N 82
9YF C19 H25 SING N N 83
9YF C19 H26 SING N N 84
9YF C2 H27 SING N N 85
9YF C20 H28 SING N N 86
9YF C20 H29 SING N N 87
9YF C21 H30 SING N N 88
9YF C21 H31 SING N N 89
9YF C22 H32 SING N N 90
9YF C22 H33 SING N N 91
9YF C23 H34 SING N N 92
9YF C23 H35 SING N N 93
9YF C23 H36 SING N N 94
9YF C24 H37 SING N N 95
9YF C24 H38 SING N N 96
9YF C26 H39 SING N N 97
9YF C26 H40 SING N N 98
9YF C27 H41 SING N N 99
9YF C27 H42 SING N N 100
9YF C28 H43 SING N N 101
9YF C28 H44 SING N N 102
9YF C29 H45 SING N N 103
9YF C29 H46 SING N N 104
9YF C3 H47 SING N N 105
9YF C30 H48 SING N N 106
9YF C30 H49 SING N N 107
9YF C31 H50 SING N N 108
9YF C31 H51 SING N N 109
9YF C32 H52 SING N N 110
9YF C32 H53 SING N N 111
9YF C33 H54 SING N N 112
9YF C34 H55 SING N N 113
9YF C34 H56 SING N N 114
9YF C34 H57 SING N N 115
9YF C35 H58 SING N N 116
9YF C35 H59 SING N N 117
9YF C36 H60 SING N N 118
9YF C36 H61 SING N N 119
9YF C37 H62 SING N N 120
9YF C37 H63 SING N N 121
9YF C38 H64 SING N N 122
9YF C38 H65 SING N N 123
9YF C39 H66 SING N N 124
9YF C39 H67 SING N N 125
9YF C4 H68 SING N N 126
9YF C40 H69 SING N N 127
9YF C40 H70 SING N N 128
9YF C41 H71 SING N N 129
9YF C41 H72 SING N N 130
9YF C42 H73 SING N N 131
9YF C42 H74 SING N N 132
9YF C43 H75 SING N N 133
9YF C43 H76 SING N N 134
9YF C43 H77 SING N N 135
9YF C5 H78 SING N N 136
9YF C6 H79 SING N N 137
9YF C7 H80 SING N N 138
9YF C9 H81 SING N N 139
9YF C9 H82 SING N N 140
9YF O5 H83 SING N N 141
9YF O6 H84 SING N N 142
9YF O7 H85 SING N N 143
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9YF SMILES ACDLabs 12.01 P(O)(OC1C(C(C(C(O)C1O)O)O)O)(OCC(COC(CCCCCCCC(C)CCCCCCCCC)=O)OC(=O)CCCCCCCCCCCCCCC)=O
9YF InChI InChI 1.03 InChI=1S/C44H85O13P/c1-4-6-8-10-12-13-14-15-16-17-19-23-28-32-38(46)56-36(34-55-58(52,53)57-44-42(50)40(48)39(47)41(49)43(44)51)33-54-37(45)31-27-24-20-22-26-30-35(3)29-25-21-18-11-9-7-5-2/h35-36,39-44,47-51H,4-34H2,1-3H3,(H,52,53)/t35-,36+,39-,40+,41+,42+,43-,44-/m0/s1
9YF InChIKey InChI 1.03 GRDWPDVMAXODDM-LZYRCPELSA-N
9YF SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC[C@@H](C)CCCCCCCCC)CO[P](O)(=O)O[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)[C@H]1O
9YF SMILES CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCC[CH](C)CCCCCCCCC)CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O
9YF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCC[C@@H](C)CCCCCCCCC)COP(=O)(O)OC1[C@@H]([C@@H](C([C@H]([C@@H]1O)O)O)O)O
9YF SMILES "OpenEye OEToolkits" 2.0.6 CCCCCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCCCC(C)CCCCCCCCC)COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9YF "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate"
9YF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R})-2-hexadecanoyloxy-3-[oxidanyl-[(2~{S},3~{R},5~{R},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] (9~{S})-9-methyloctadecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9YF 'Create component' 2018-08-30 PDBJ
9YF 'Initial release' 2018-11-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9YF P P 8.637 3.569 1
9YF O1 O 7.897 4.873 2
9YF O2 O 9.956 4.313 3
9YF O3 O 12.543 5.834 4
9YF O4 O 15.160 4.370 5
9YF C C 4.773 2.816 6
9YF O O 7.347 2.828 7
9YF C1 C 6.059 3.571 8
9YF C10 C 2.205 -1.699 9
9YF C11 C 2.210 -3.199 10
9YF C12 C 0.914 -3.953 11
9YF C13 C 0.919 -5.453 12
9YF C14 C -0.377 -6.208 13
9YF C15 C -0.372 -7.708 14
9YF C16 C -1.668 -8.462 15
9YF C17 C -1.663 -9.962 16
9YF C18 C -2.959 -10.717 17
9YF C19 C -2.954 -12.217 18
9YF C2 C 11.276 3.564 19
9YF C20 C -4.250 -12.971 20
9YF C21 C -4.245 -14.471 21
9YF C22 C -5.541 -15.226 22
9YF C23 C -5.536 -16.726 23
9YF C24 C 3.474 3.556 24
9YF C25 C 0.884 3.546 25
9YF C26 C -0.412 2.792 26
9YF C27 C -1.712 3.538 27
9YF C28 C -3.008 2.783 28
9YF C29 C -4.310 3.528 29
9YF C3 C 12.564 4.333 30
9YF C30 C -5.606 2.773 31
9YF C31 C -6.908 3.519 32
9YF C32 C -8.204 2.764 33
9YF C33 C -9.506 3.510 34
9YF C34 C -9.511 5.009 35
9YF C35 C -10.802 2.755 36
9YF C36 C -12.104 3.500 37
9YF C37 C -13.400 2.746 38
9YF C38 C -14.702 3.491 39
9YF C39 C -15.998 2.736 40
9YF C4 C 13.872 3.604 41
9YF C40 C -17.300 3.481 42
9YF C41 C -18.596 2.727 43
9YF C42 C -19.898 3.472 44
9YF C43 C -21.194 2.718 45
9YF C5 C 13.890 2.102 46
9YF C6 C 12.604 1.328 47
9YF C7 C 11.299 2.061 48
9YF C8 C 3.492 0.557 49
9YF C9 C 3.500 -0.943 50
9YF O10 O 2.190 1.300 51
9YF O11 O 2.183 2.801 52
9YF O12 O 0.880 5.046 53
9YF O5 O 15.201 1.369 54
9YF O6 O 12.626 -0.170 55
9YF O7 O 10.041 1.297 56
9YF O8 O 9.356 2.285 57
9YF O9 O 4.785 1.315 58
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9YF C43 C42 SINGLE NONE 1
9YF C41 C42 SINGLE NONE 2
9YF C41 C40 SINGLE NONE 3
9YF C40 C39 SINGLE NONE 4
9YF C39 C38 SINGLE NONE 5
9YF C38 C37 SINGLE NONE 6
9YF C36 C37 SINGLE NONE 7
9YF C36 C35 SINGLE NONE 8
9YF C33 C34 SINGLE BEGINDASH 9
9YF C23 C22 SINGLE NONE 10
9YF C35 C33 SINGLE NONE 11
9YF C33 C32 SINGLE NONE 12
9YF C22 C21 SINGLE NONE 13
9YF C21 C20 SINGLE NONE 14
9YF C32 C31 SINGLE NONE 15
9YF C18 C17 SINGLE NONE 16
9YF C18 C19 SINGLE NONE 17
9YF C17 C16 SINGLE NONE 18
9YF C31 C30 SINGLE NONE 19
9YF C20 C19 SINGLE NONE 20
9YF C30 C29 SINGLE NONE 21
9YF C16 C15 SINGLE NONE 22
9YF C29 C28 SINGLE NONE 23
9YF C15 C14 SINGLE NONE 24
9YF C28 C27 SINGLE NONE 25
9YF C14 C13 SINGLE NONE 26
9YF C27 C26 SINGLE NONE 27
9YF O12 C25 DOUBLE NONE 28
9YF C12 C13 SINGLE NONE 29
9YF C12 C11 SINGLE NONE 30
9YF C26 C25 SINGLE NONE 31
9YF C25 O11 SINGLE NONE 32
9YF C11 C10 SINGLE NONE 33
9YF C24 O11 SINGLE NONE 34
9YF C C24 SINGLE BEGINDASH 35
9YF O9 C SINGLE NONE 36
9YF O9 C8 SINGLE NONE 37
9YF C C1 SINGLE NONE 38
9YF C10 C9 SINGLE NONE 39
9YF C8 O10 DOUBLE NONE 40
9YF C8 C9 SINGLE NONE 41
9YF C1 O SINGLE NONE 42
9YF O P SINGLE NONE 43
9YF O8 P DOUBLE NONE 44
9YF C3 O3 SINGLE BEGINWEDGE 45
9YF P O1 SINGLE BEGINWEDGE 46
9YF P O2 SINGLE NONE 47
9YF C3 C4 SINGLE NONE 48
9YF C3 C2 SINGLE NONE 49
9YF C4 O4 SINGLE BEGINDASH 50
9YF C4 C5 SINGLE NONE 51
9YF C2 O2 SINGLE BEGINDASH 52
9YF C2 C7 SINGLE NONE 53
9YF C6 O6 SINGLE BEGINWEDGE 54
9YF C5 O5 SINGLE BEGINWEDGE 55
9YF C5 C6 SINGLE NONE 56
9YF C7 O7 SINGLE BEGINWEDGE 57
9YF C7 C6 SINGLE NONE 58
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9YF MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
9YF cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
9YF phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9YF C2 S1 1
9YF C3 S1 1
9YF C4 S1 1
9YF C5 S1 1
9YF C6 S1 1
9YF C7 S1 1
9YF C2 F1 1
9YF C3 F1 1
9YF C4 F1 1
9YF C5 F1 1
9YF C6 F1 1
9YF C7 F1 1
9YF O1 F2 1
9YF P F2 1
9YF O8 F2 1
9YF O F2 1
9YF O2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9YF
_pdbe_chem_comp_rdkit_properties.exactmw 852.573
_pdbe_chem_comp_rdkit_properties.amw 853.125
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 47
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 58
_pdbe_chem_comp_rdkit_properties.NumAtoms 143
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.955
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 470.461
_pdbe_chem_comp_rdkit_properties.tpsa 209.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP 8.751
_pdbe_chem_comp_rdkit_properties.CrippenMR 225.928
_pdbe_chem_comp_rdkit_properties.chi0v 28.649
_pdbe_chem_comp_rdkit_properties.chi1v 15.095
_pdbe_chem_comp_rdkit_properties.chi2v 4.922
_pdbe_chem_comp_rdkit_properties.chi3v 4.922
_pdbe_chem_comp_rdkit_properties.chi4v 2.827
_pdbe_chem_comp_rdkit_properties.chi0n 112.754
_pdbe_chem_comp_rdkit_properties.chi1n 55.583
_pdbe_chem_comp_rdkit_properties.chi2n 4.201
_pdbe_chem_comp_rdkit_properties.chi3n 4.201
_pdbe_chem_comp_rdkit_properties.chi4n 2.205
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.150
_pdbe_chem_comp_rdkit_properties.kappa1 8.813
_pdbe_chem_comp_rdkit_properties.kappa2 34.438
_pdbe_chem_comp_rdkit_properties.kappa3 26.931
_pdbe_chem_comp_rdkit_properties.Phi 5.233
#
_pdbe_chem_comp_external_mappings.comp_id 9YF
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 9YF
#