data_9Z0
#
_chem_comp.id 9Z0
_chem_comp.name 4,5-dibromo-N-(3-hydroxypropyl)-1H-pyrrole-2-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H10 Br2 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-01-22
_chem_comp.pdbx_modified_date 2015-05-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 325.985
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9Z0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5AFM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9Z0 O01 O01 O 0 1 N N N N N N 20.508 -8.420 -27.855 2.328 -2.382 0.007 O01 9Z0 1
9Z0 C02 C02 C 0 1 N N N N N N 20.933 -9.532 -28.156 2.065 -1.194 0.007 C02 9Z0 2
9Z0 N03 N03 N 0 1 N N N N N N 22.336 -9.734 -28.378 3.060 -0.284 0.004 N03 9Z0 3
9Z0 C04 C04 C 0 1 N N N N N N 23.268 -8.646 -28.276 4.457 -0.726 0.001 C04 9Z0 4
9Z0 C05 C05 C 0 1 N N N N N N 24.140 -8.564 -27.065 5.378 0.495 -0.002 C05 9Z0 5
9Z0 C06 C06 C 0 1 N N N N N N 23.980 -7.392 -26.149 6.837 0.034 -0.005 C06 9Z0 6
9Z0 O07 O07 O 0 1 N N N N N N 24.389 -6.137 -26.566 7.697 1.174 -0.008 O07 9Z0 7
9Z0 C08 C08 C 0 1 Y N N N N N 19.986 -10.679 -28.239 0.668 -0.752 0.004 C08 9Z0 8
9Z0 C09 C09 C 0 1 Y N N N N N 20.276 -11.927 -28.751 -0.445 -1.567 0.002 C09 9Z0 9
9Z0 C10 C10 C 0 1 Y N N N N N 19.121 -12.683 -28.628 -1.566 -0.732 -0.000 C10 9Z0 10
9Z0 BR1 BR1 BR 0 0 N N N N N N 18.828 -14.490 -29.233 -3.372 -1.294 -0.004 BR1 9Z0 11
9Z0 C12 C12 C 0 1 Y N N N N N 18.162 -11.892 -28.038 -1.130 0.552 0.002 C12 9Z0 12
9Z0 BR2 BR2 BR 0 0 N N N N N N 16.352 -12.465 -27.641 -2.231 2.089 0.001 BR2 9Z0 13
9Z0 N14 N14 N 0 1 Y N N N N N 18.712 -10.691 -27.807 0.227 0.553 0.010 N14 9Z0 14
9Z0 H03 H03 H 0 1 N N N N N N 22.671 -10.648 -28.608 2.851 0.663 0.004 H03 9Z0 15
9Z0 H041 H041 H 0 0 N N N N N N 23.932 -8.705 -29.151 4.650 -1.325 0.891 H041 9Z0 16
9Z0 H042 H042 H 0 0 N N N N N N 22.685 -7.714 -28.320 4.646 -1.326 -0.889 H042 9Z0 17
9Z0 H051 H051 H 0 0 N N N N N N 23.954 -9.470 -26.469 5.184 1.094 -0.892 H051 9Z0 18
9Z0 H052 H052 H 0 0 N N N N N N 25.183 -8.563 -27.415 5.189 1.095 0.888 H052 9Z0 19
9Z0 H061 H061 H 0 0 N N N N N N 22.909 -7.316 -25.911 7.030 -0.565 0.885 H061 9Z0 20
9Z0 H062 H062 H 0 0 N N N N N N 24.543 -7.623 -25.233 7.026 -0.566 -0.895 H062 9Z0 21
9Z0 H07 H07 H 0 1 N N N N N N 24.222 -5.504 -25.877 8.639 0.956 -0.010 H07 9Z0 22
9Z0 H09 H09 H 0 1 N N N N N N 21.219 -12.251 -29.166 -0.449 -2.647 0.001 H09 9Z0 23
9Z0 H14 H14 H 0 1 N N N N N N 18.244 -9.919 -27.377 0.792 1.342 0.016 H14 9Z0 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9Z0 O01 C02 DOUB N N 1
9Z0 C02 N03 SING N N 2
9Z0 C02 C08 SING N N 3
9Z0 N03 C04 SING N N 4
9Z0 C04 C05 SING N N 5
9Z0 C05 C06 SING N N 6
9Z0 C06 O07 SING N N 7
9Z0 C08 C09 DOUB Y N 8
9Z0 C08 N14 SING Y N 9
9Z0 C09 C10 SING Y N 10
9Z0 C10 BR1 SING N N 11
9Z0 C10 C12 DOUB Y N 12
9Z0 C12 BR2 SING N N 13
9Z0 C12 N14 SING Y N 14
9Z0 N03 H03 SING N N 15
9Z0 C04 H041 SING N N 16
9Z0 C04 H042 SING N N 17
9Z0 C05 H051 SING N N 18
9Z0 C05 H052 SING N N 19
9Z0 C06 H061 SING N N 20
9Z0 C06 H062 SING N N 21
9Z0 O07 H07 SING N N 22
9Z0 C09 H09 SING N N 23
9Z0 N14 H14 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9Z0 SMILES ACDLabs 12.01 O=C(c1cc(Br)c(Br)n1)NCCCO
9Z0 InChI InChI 1.03 InChI=1S/C8H10Br2N2O2/c9-5-4-6(12-7(5)10)8(14)11-2-1-3-13/h4,12-13H,1-3H2,(H,11,14)
9Z0 InChIKey InChI 1.03 UAVIBMSTKCBELE-UHFFFAOYSA-N
9Z0 SMILES_CANONICAL CACTVS 3.385 OCCCNC(=O)c1[nH]c(Br)c(Br)c1
9Z0 SMILES CACTVS 3.385 OCCCNC(=O)c1[nH]c(Br)c(Br)c1
9Z0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1c(c([nH]c1C(=O)NCCCO)Br)Br
9Z0 SMILES "OpenEye OEToolkits" 1.7.6 c1c(c([nH]c1C(=O)NCCCO)Br)Br
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9Z0 "SYSTEMATIC NAME" ACDLabs 12.01 4,5-dibromo-N-(3-hydroxypropyl)-1H-pyrrole-2-carboxamide
9Z0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4,5-bis(bromanyl)-N-(3-oxidanylpropyl)-1H-pyrrole-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9Z0 'Create component' 2015-01-22 EBI
9Z0 'Initial release' 2015-05-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9Z0 O01 O 9.770 -2.285 1
9Z0 C02 C 10.082 -0.818 2
9Z0 N03 N 8.967 0.185 3
9Z0 C04 C 7.540 -0.278 4
9Z0 C05 C 6.426 0.726 5
9Z0 C06 C 4.999 0.262 6
9Z0 O07 O 3.884 1.266 7
9Z0 C08 C 11.508 -0.355 8
9Z0 C09 C 12.722 -1.236 9
9Z0 C10 C 13.935 -0.355 10
9Z0 BR1 Br 15.362 -0.818 11
9Z0 C12 C 13.472 1.072 12
9Z0 BR2 Br 14.354 2.285 13
9Z0 N14 N 11.972 1.072 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9Z0 O01 C02 DOUBLE NONE 1
9Z0 C02 N03 SINGLE NONE 2
9Z0 C02 C08 SINGLE NONE 3
9Z0 N03 C04 SINGLE NONE 4
9Z0 C04 C05 SINGLE NONE 5
9Z0 C05 C06 SINGLE NONE 6
9Z0 C06 O07 SINGLE NONE 7
9Z0 C08 C09 DOUBLE NONE 8
9Z0 C08 N14 SINGLE NONE 9
9Z0 C09 C10 SINGLE NONE 10
9Z0 C10 BR1 SINGLE NONE 11
9Z0 C10 C12 DOUBLE NONE 12
9Z0 C12 BR2 SINGLE NONE 13
9Z0 C12 N14 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9Z0 MurckoScaffold S1 scaffold 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
9Z0 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9Z0 pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9Z0 C08 S1 1
9Z0 C09 S1 1
9Z0 C10 S1 1
9Z0 C12 S1 1
9Z0 N14 S1 1
9Z0 N03 F1 1
9Z0 C02 F1 1
9Z0 O01 F1 1
9Z0 C08 F1 1
9Z0 C08 F2 1
9Z0 C09 F2 1
9Z0 C10 F2 1
9Z0 C12 F2 1
9Z0 N14 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9Z0
_pdbe_chem_comp_rdkit_properties.exactmw 323.911
_pdbe_chem_comp_rdkit_properties.amw 325.988
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.375
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 112.594
_pdbe_chem_comp_rdkit_properties.tpsa 65.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.597
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.963
_pdbe_chem_comp_rdkit_properties.chi0v 9.639
_pdbe_chem_comp_rdkit_properties.chi1v 4.767
_pdbe_chem_comp_rdkit_properties.chi2v 2.766
_pdbe_chem_comp_rdkit_properties.chi3v 2.766
_pdbe_chem_comp_rdkit_properties.chi4v 1.139
_pdbe_chem_comp_rdkit_properties.chi0n 16.467
_pdbe_chem_comp_rdkit_properties.chi1n 7.983
_pdbe_chem_comp_rdkit_properties.chi2n 1.086
_pdbe_chem_comp_rdkit_properties.chi3n 1.086
_pdbe_chem_comp_rdkit_properties.chi4n 0.587
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.330
_pdbe_chem_comp_rdkit_properties.kappa1 3.917
_pdbe_chem_comp_rdkit_properties.kappa2 5.526
_pdbe_chem_comp_rdkit_properties.kappa3 3.110
_pdbe_chem_comp_rdkit_properties.Phi 1.546
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9Z0 UniChem PDBe 9Z0
9Z0 UniChem ZINC ZINC000003883299
9Z0 UniChem eMolecules 4850515
9Z0 UniChem SureChEMBL SCHEMBL7144789
9Z0 UniChem 'PubChem TPHARMA' 15521182
9Z0 UniChem PubChem 2763349
9Z0 UniChem Mcule MCULE-5978115322
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9Z0 O01 0.129 -1.604 0.392 ETKDGv3 1
9Z0 C02 0.598 -0.441 0.259 ETKDGv3 2
9Z0 N03 -0.285 0.693 0.295 ETKDGv3 3
9Z0 C04 -1.738 0.550 0.369 ETKDGv3 4
9Z0 C05 -2.301 0.104 -0.986 ETKDGv3 5
9Z0 C06 -3.831 0.044 -0.980 ETKDGv3 6
9Z0 O07 -4.284 -0.980 -0.135 ETKDGv3 7
9Z0 C08 2.054 -0.280 0.079 ETKDGv3 8
9Z0 C09 2.697 0.855 -0.184 ETKDGv3 9
9Z0 C10 4.116 0.525 -0.297 ETKDGv3 10
9Z0 BR1 5.520 1.765 -0.669 ETKDGv3 11
9Z0 C12 4.243 -0.779 -0.100 ETKDGv3 12
9Z0 BR2 5.877 -1.768 -0.135 ETKDGv3 13
9Z0 N14 2.973 -1.365 0.144 ETKDGv3 14
9Z0 H03 0.109 1.658 0.340 ETKDGv3 15
9Z0 H041 -2.184 1.531 0.644 ETKDGv3 16
9Z0 H042 -2.001 -0.181 1.164 ETKDGv3 17
9Z0 H051 -1.977 0.826 -1.766 ETKDGv3 18
9Z0 H052 -1.898 -0.896 -1.255 ETKDGv3 19
9Z0 H061 -4.180 -0.174 -2.011 ETKDGv3 20
9Z0 H062 -4.260 1.030 -0.686 ETKDGv3 21
9Z0 H07 -4.408 -0.579 0.764 ETKDGv3 22
9Z0 H09 2.264 1.837 -0.310 ETKDGv3 23
9Z0 H14 2.766 -2.372 0.329 ETKDGv3 24
#