data_9ZJ
#
_chem_comp.id 9ZJ
_chem_comp.name (2R,4S)-6-chloro-4-(cyclopropylethynyl)-2-methyl-4-(trifluoromethyl)-1,4-dihydro-2H-3,1-benzoxazine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H13 Cl F3 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-06-29
_chem_comp.pdbx_modified_date 2018-04-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 315.718
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9ZJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5WBG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9ZJ CAK C1 C 0 1 N N N N N N 1.254 -4.556 -2.070 4.765 1.371 -1.189 CAK 9ZJ 1
9ZJ CAL C2 C 0 1 N N N N N N 2.710 -4.588 -1.632 3.921 2.646 -1.132 CAL 9ZJ 2
9ZJ CAS C3 C 0 1 N N N N N N 1.913 -5.879 -1.712 3.322 1.357 -1.696 CAS 9ZJ 3
9ZJ CAF C4 C 0 1 N N N N N N 2.237 -6.739 -2.856 2.320 0.657 -0.875 CAF 9ZJ 4
9ZJ CAG C5 C 0 1 N N N N N N 2.508 -7.457 -3.810 1.521 0.099 -0.220 CAG 9ZJ 5
9ZJ CAU C6 C 0 1 N N S N N N 2.833 -8.318 -4.953 0.519 -0.601 0.601 CAU 9ZJ 6
9ZJ CAT C7 C 0 1 N N N N N N 1.545 -8.902 -5.533 0.449 0.054 1.982 CAT 9ZJ 7
9ZJ FAC F1 F 0 1 N N N N N N 1.676 -9.045 -6.848 0.224 1.427 1.836 FAC 9ZJ 8
9ZJ FAD F2 F 0 1 N N N N N N 1.308 -10.088 -4.981 -0.599 -0.514 2.714 FAD 9ZJ 9
9ZJ FAB F3 F 0 1 N N N N N N 0.531 -8.082 -5.276 1.656 -0.152 2.658 FAB 9ZJ 10
9ZJ OAN O1 O 0 1 N N N N N N 3.563 -8.989 -3.991 0.899 -1.970 0.745 OAN 9ZJ 11
9ZJ CAR C8 C 0 1 N N R N N N 4.986 -9.011 -4.023 0.813 -2.723 -0.471 CAR 9ZJ 12
9ZJ CAA C9 C 0 1 N N N N N N 5.776 -9.675 -2.958 1.651 -2.047 -1.558 CAA 9ZJ 13
9ZJ NAM N1 N 0 1 N N N N N N 5.562 -7.948 -4.791 -0.600 -2.759 -0.882 NAM 9ZJ 14
9ZJ CAP C10 C 0 1 Y N N N N N 4.853 -7.376 -5.852 -1.342 -1.574 -0.782 CAP 9ZJ 15
9ZJ CAQ C11 C 0 1 Y N N N N N 3.480 -7.565 -5.929 -0.828 -0.502 -0.064 CAQ 9ZJ 16
9ZJ CAJ C12 C 0 1 Y N N N N N 2.758 -7.006 -6.976 -1.561 0.666 0.037 CAJ 9ZJ 17
9ZJ CAO C13 C 0 1 Y N N N N N 3.415 -6.256 -7.945 -2.798 0.765 -0.575 CAO 9ZJ 18
9ZJ CL CL1 CL 0 0 N N N N N N 2.522 -5.559 -9.246 -3.713 2.234 -0.443 CL 9ZJ 19
9ZJ CAH C14 C 0 1 Y N N N N N 4.790 -6.066 -7.867 -3.308 -0.303 -1.292 CAH 9ZJ 20
9ZJ CAI C15 C 0 1 Y N N N N N 5.511 -6.627 -6.820 -2.581 -1.474 -1.396 CAI 9ZJ 21
9ZJ H1 H1 H 0 1 N N N N N N 0.999 -4.334 -3.117 5.560 1.327 -1.933 H1 9ZJ 22
9ZJ H2 H2 H 0 1 N N N N N N 0.489 -4.125 -1.407 4.973 0.863 -0.247 H2 9ZJ 23
9ZJ H3 H3 H 0 1 N N N N N N 3.508 -4.388 -2.362 3.574 2.977 -0.153 H3 9ZJ 24
9ZJ H4 H4 H 0 1 N N N N N N 2.999 -4.180 -0.652 4.161 3.441 -1.838 H4 9ZJ 25
9ZJ H5 H5 H 0 1 N N N N N N 1.618 -6.353 -0.764 3.167 1.303 -2.773 H5 9ZJ 26
9ZJ H6 H6 H 0 1 N N N N N N 5.095 -9.801 -4.780 1.175 -3.737 -0.303 H6 9ZJ 27
9ZJ H7 H7 H 0 1 N N N N N N 5.168 -10.460 -2.484 2.642 -1.821 -1.165 H7 9ZJ 28
9ZJ H8 H8 H 0 1 N N N N N N 6.678 -10.126 -3.398 1.744 -2.716 -2.414 H8 9ZJ 29
9ZJ H9 H9 H 0 1 N N N N N N 6.069 -8.932 -2.202 1.165 -1.123 -1.871 H9 9ZJ 30
9ZJ H10 H10 H 0 1 N N N N N N 6.416 -8.301 -5.174 -1.004 -3.576 -1.211 H10 9ZJ 31
9ZJ H11 H11 H 0 1 N N N N N N 1.690 -7.154 -7.037 -1.167 1.502 0.596 H11 9ZJ 32
9ZJ H12 H12 H 0 1 N N N N N N 5.298 -5.482 -8.620 -4.273 -0.222 -1.769 H12 9ZJ 33
9ZJ H13 H13 H 0 1 N N N N N N 6.579 -6.481 -6.759 -2.977 -2.309 -1.956 H13 9ZJ 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9ZJ CL CAO SING N N 1
9ZJ CAO CAH DOUB Y N 2
9ZJ CAO CAJ SING Y N 3
9ZJ CAH CAI SING Y N 4
9ZJ CAJ CAQ DOUB Y N 5
9ZJ FAC CAT SING N N 6
9ZJ CAI CAP DOUB Y N 7
9ZJ CAQ CAP SING Y N 8
9ZJ CAQ CAU SING N N 9
9ZJ CAP NAM SING N N 10
9ZJ CAT FAB SING N N 11
9ZJ CAT FAD SING N N 12
9ZJ CAT CAU SING N N 13
9ZJ CAU OAN SING N N 14
9ZJ CAU CAG SING N N 15
9ZJ NAM CAR SING N N 16
9ZJ CAR OAN SING N N 17
9ZJ CAR CAA SING N N 18
9ZJ CAG CAF TRIP N N 19
9ZJ CAF CAS SING N N 20
9ZJ CAK CAS SING N N 21
9ZJ CAK CAL SING N N 22
9ZJ CAS CAL SING N N 23
9ZJ CAK H1 SING N N 24
9ZJ CAK H2 SING N N 25
9ZJ CAL H3 SING N N 26
9ZJ CAL H4 SING N N 27
9ZJ CAS H5 SING N N 28
9ZJ CAR H6 SING N N 29
9ZJ CAA H7 SING N N 30
9ZJ CAA H8 SING N N 31
9ZJ CAA H9 SING N N 32
9ZJ NAM H10 SING N N 33
9ZJ CAJ H11 SING N N 34
9ZJ CAH H12 SING N N 35
9ZJ CAI H13 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9ZJ SMILES ACDLabs 12.01 "C1C(C1)C#CC2(OC(C)Nc3c2cc(cc3)Cl)C(F)(F)F"
9ZJ InChI InChI 1.03 InChI=1S/C15H13ClF3NO/c1-9-20-13-5-4-11(16)8-12(13)14(21-9,15(17,18)19)7-6-10-2-3-10/h4-5,8-10,20H,2-3H2,1H3/t9-,14+/m1/s1
9ZJ InChIKey InChI 1.03 IMPMOBJZWFZYGR-OTYXRUKQSA-N
9ZJ SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1Nc2ccc(Cl)cc2[C@@](O1)(C#CC3CC3)C(F)(F)F"
9ZJ SMILES CACTVS 3.385 "C[CH]1Nc2ccc(Cl)cc2[C](O1)(C#CC3CC3)C(F)(F)F"
9ZJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]1Nc2ccc(cc2[C@@](O1)(C#CC3CC3)C(F)(F)F)Cl"
9ZJ SMILES "OpenEye OEToolkits" 2.0.6 "CC1Nc2ccc(cc2C(O1)(C#CC3CC3)C(F)(F)F)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9ZJ "SYSTEMATIC NAME" ACDLabs 12.01 (2R,4S)-6-chloro-4-(cyclopropylethynyl)-2-methyl-4-(trifluoromethyl)-1,4-dihydro-2H-3,1-benzoxazine
9ZJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (2~{R},4~{S})-6-chloranyl-4-(2-cyclopropylethynyl)-2-methyl-4-(trifluoromethyl)-1,2-dihydro-3,1-benzoxazine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9ZJ 'Create component' 2017-06-29 RCSB
9ZJ 'Other modification' 2017-07-13 RCSB
9ZJ 'Initial release' 2018-05-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9ZJ CAK C 4.746 -3.913 1
9ZJ CAL C 6.045 -4.663 2
9ZJ CAS C 6.045 -3.163 3
9ZJ CAF C 6.795 -1.865 4
9ZJ CAG C 7.545 -0.566 5
9ZJ CAU C 8.295 0.734 6
9ZJ CAT C 9.045 -0.566 7
9ZJ FAC F 9.795 -1.865 8
9ZJ FAD F 8.295 -1.865 9
9ZJ FAB F 10.344 0.184 10
9ZJ OAN O 9.594 1.484 11
9ZJ CAR C 9.594 2.983 12
9ZJ CAA C 10.893 3.733 13
9ZJ NAM N 8.295 3.733 14
9ZJ CAP C 6.996 2.983 15
9ZJ CAQ C 6.996 1.484 16
9ZJ CAJ C 5.655 0.682 17
9ZJ CAO C 4.296 1.452 18
9ZJ CL Cl 3.000 0.697 19
9ZJ CAH C 4.296 3.015 20
9ZJ CAI C 5.655 3.785 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9ZJ CL CAO SINGLE NONE 1
9ZJ CAO CAH DOUBLE NONE 2
9ZJ CAO CAJ SINGLE NONE 3
9ZJ CAH CAI SINGLE NONE 4
9ZJ CAJ CAQ DOUBLE NONE 5
9ZJ FAC CAT SINGLE NONE 6
9ZJ CAI CAP DOUBLE NONE 7
9ZJ CAQ CAP SINGLE NONE 8
9ZJ CAQ CAU SINGLE NONE 9
9ZJ CAP NAM SINGLE NONE 10
9ZJ CAT FAB SINGLE NONE 11
9ZJ CAT FAD SINGLE NONE 12
9ZJ CAT CAU SINGLE NONE 13
9ZJ CAU OAN SINGLE NONE 14
9ZJ CAU CAG SINGLE BEGINWEDGE 15
9ZJ NAM CAR SINGLE NONE 16
9ZJ CAR OAN SINGLE NONE 17
9ZJ CAR CAA SINGLE BEGINWEDGE 18
9ZJ CAG CAF TRIPLE NONE 19
9ZJ CAF CAS SINGLE NONE 20
9ZJ CAK CAS SINGLE NONE 21
9ZJ CAK CAL SINGLE NONE 22
9ZJ CAS CAL SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9ZJ MurckoScaffold S1 scaffold 'C(#CC1OCNc2ccccc21)C1CC1' InChI=1S/C13H13NO/c1-2-4-12-11(3-1)13(15-9-14-12)8-7-10-5-6-10/h1-4,10,13-14H,5-6,9H2 BKPQAGRIUIHGDO-UHFFFAOYSA-N
9ZJ cyclopropane F1 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
9ZJ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9ZJ CAK S1 1
9ZJ CAL S1 1
9ZJ CAS S1 1
9ZJ CAF S1 1
9ZJ CAG S1 1
9ZJ CAU S1 1
9ZJ OAN S1 1
9ZJ CAR S1 1
9ZJ NAM S1 1
9ZJ CAP S1 1
9ZJ CAQ S1 1
9ZJ CAJ S1 1
9ZJ CAO S1 1
9ZJ CAH S1 1
9ZJ CAI S1 1
9ZJ CAK F1 1
9ZJ CAS F1 1
9ZJ CAL F1 1
9ZJ CAP F2 1
9ZJ CAI F2 1
9ZJ CAH F2 1
9ZJ CAO F2 1
9ZJ CAJ F2 1
9ZJ CAQ F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9ZJ
_pdbe_chem_comp_rdkit_properties.exactmw 315.064
_pdbe_chem_comp_rdkit_properties.amw 315.722
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.467
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 143.489
_pdbe_chem_comp_rdkit_properties.tpsa 21.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.864
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.765
_pdbe_chem_comp_rdkit_properties.chi0v 10.623
_pdbe_chem_comp_rdkit_properties.chi1v 5.739
_pdbe_chem_comp_rdkit_properties.chi2v 2.779
_pdbe_chem_comp_rdkit_properties.chi3v 2.779
_pdbe_chem_comp_rdkit_properties.chi4v 1.780
_pdbe_chem_comp_rdkit_properties.chi0n 22.867
_pdbe_chem_comp_rdkit_properties.chi1n 11.809
_pdbe_chem_comp_rdkit_properties.chi2n 2.590
_pdbe_chem_comp_rdkit_properties.chi3n 2.590
_pdbe_chem_comp_rdkit_properties.chi4n 1.639
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.380
_pdbe_chem_comp_rdkit_properties.kappa1 5.676
_pdbe_chem_comp_rdkit_properties.kappa2 4.823
_pdbe_chem_comp_rdkit_properties.kappa3 2.583
_pdbe_chem_comp_rdkit_properties.Phi 1.304
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9ZJ UniChem PDBe 9ZJ
9ZJ UniChem PubChem 124584023
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9ZJ CAK 4.457 1.108 -0.775 ETKDGv3 1
9ZJ CAL 3.607 2.317 -1.130 ETKDGv3 2
9ZJ CAS 3.313 0.968 -1.764 ETKDGv3 3
9ZJ CAF 2.128 0.297 -1.217 ETKDGv3 4
9ZJ CAG 1.157 -0.249 -0.758 ETKDGv3 5
9ZJ CAU -0.031 -0.909 -0.183 ETKDGv3 6
9ZJ CAT 0.419 -2.252 0.458 ETKDGv3 7
9ZJ FAC 1.567 -2.077 1.215 ETKDGv3 8
9ZJ FAD 0.686 -3.181 -0.533 ETKDGv3 9
9ZJ FAB -0.560 -2.761 1.293 ETKDGv3 10
9ZJ OAN -0.909 -1.130 -1.289 ETKDGv3 11
9ZJ CAR -2.227 -1.510 -0.924 ETKDGv3 12
9ZJ CAA -3.026 -1.769 -2.198 ETKDGv3 13
9ZJ NAM -2.871 -0.457 -0.140 ETKDGv3 14
9ZJ CAP -2.103 0.237 0.839 ETKDGv3 15
9ZJ CAQ -0.641 0.023 0.863 ETKDGv3 16
9ZJ CAJ 0.094 0.615 1.828 ETKDGv3 17
9ZJ CAO -0.550 1.511 2.813 ETKDGv3 18
9ZJ CL 0.424 2.297 4.042 ETKDGv3 19
9ZJ CAH -1.871 1.725 2.761 ETKDGv3 20
9ZJ CAI -2.687 1.054 1.730 ETKDGv3 21
9ZJ H1 5.467 1.118 -1.237 ETKDGv3 22
9ZJ H2 4.274 0.715 0.249 ETKDGv3 23
9ZJ H3 2.922 2.640 -0.316 ETKDGv3 24
9ZJ H4 4.116 3.041 -1.802 ETKDGv3 25
9ZJ H5 3.591 0.851 -2.833 ETKDGv3 26
9ZJ H6 -2.226 -2.456 -0.344 ETKDGv3 27
9ZJ H7 -3.086 -0.843 -2.809 ETKDGv3 28
9ZJ H8 -4.054 -2.105 -1.945 ETKDGv3 29
9ZJ H9 -2.532 -2.564 -2.797 ETKDGv3 30
9ZJ H10 -3.904 -0.306 -0.202 ETKDGv3 31
9ZJ H11 1.163 0.456 1.887 ETKDGv3 32
9ZJ H12 -2.349 2.381 3.477 ETKDGv3 33
9ZJ H13 -3.758 1.213 1.713 ETKDGv3 34
#