data_A1AH3
#
_chem_comp.id A1AH3
_chem_comp.name
"{(2R,3S,4R,5R)-5-[(8S)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl [(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H23 N5 O14 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-03-12
_chem_comp.pdbx_modified_date 2024-04-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 583.337
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AH3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9AZX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AH3 N1 N1 N 0 1 N N N N N N -22.160 11.540 -17.154 3.773 -0.736 3.369 N1 A1AH3 1
A1AH3 N3 N2 N 0 1 Y N N N N N -18.870 10.774 -17.927 3.826 -2.543 -0.065 N3 A1AH3 2
A1AH3 C4 C1 C 0 1 N N N N N N -21.500 10.911 -16.470 4.056 -0.257 2.379 C4 A1AH3 3
A1AH3 C5 C2 C 0 1 N N R N N N -20.189 10.759 -13.465 2.717 1.890 0.920 C5 A1AH3 4
A1AH3 C6 C3 C 0 1 N N N N N N -19.295 9.969 -12.521 1.794 2.607 -0.067 C6 A1AH3 5
A1AH3 C7 C4 C 0 1 N N N N N N -16.925 5.906 -8.425 -5.593 0.031 -0.818 C7 A1AH3 6
A1AH3 C8 C5 C 0 1 N N R N N N -16.942 4.400 -8.537 -6.049 -1.097 0.109 C8 A1AH3 7
A1AH3 C10 C6 C 0 1 N N R N N N -15.061 3.435 -9.630 -8.055 -1.679 1.363 C10 A1AH3 8
A1AH3 C13 C7 C 0 1 Y N N N N N -20.038 7.614 -16.695 6.608 -0.275 -0.049 C13 A1AH3 9
A1AH3 C15 C8 C 0 1 Y N N N N N -18.691 8.391 -18.315 6.082 -2.302 -0.816 C15 A1AH3 10
A1AH3 C17 C9 C 0 1 Y N N N N N -17.818 8.672 -19.399 5.963 -3.590 -1.387 C17 A1AH3 11
A1AH3 C1 C10 C 0 1 N N S N N N -21.657 10.343 -13.495 3.963 2.752 1.216 C1 A1AH3 12
A1AH3 C11 C11 C 0 1 N N R N N N -16.310 3.147 -10.447 -6.782 -1.574 2.232 C11 A1AH3 13
A1AH3 C12 C12 C 0 1 Y N N N N N -20.011 9.029 -16.629 5.327 -0.552 0.311 C12 A1AH3 14
A1AH3 C14 C13 C 0 1 Y N N N N N -19.209 7.240 -17.755 7.100 -1.370 -0.762 C14 A1AH3 15
A1AH3 C16 C14 C 0 1 Y N N N N N -18.049 10.947 -18.928 3.782 -3.726 -0.614 C16 A1AH3 16
A1AH3 C2 C15 C 0 1 N N R N N N -21.613 9.292 -14.606 5.111 1.725 1.334 C2 A1AH3 17
A1AH3 C3 C16 C 0 1 N N R N N N -20.710 9.956 -15.669 4.423 0.363 1.095 C3 A1AH3 18
A1AH3 C9 C17 C 0 1 N N S N N N -15.617 3.699 -8.232 -7.562 -1.357 -0.065 C9 A1AH3 19
A1AH3 N2 N3 N 0 1 Y N N N N N -19.193 9.467 -17.625 4.995 -1.774 -0.146 N2 A1AH3 20
A1AH3 N4 N4 N 0 1 Y N N N N N -17.495 9.964 -19.670 4.822 -4.248 -1.263 N4 A1AH3 21
A1AH3 N5 N5 N 0 1 N N N N N N -17.278 7.699 -20.143 7.024 -4.155 -2.065 N5 A1AH3 22
A1AH3 O1 O1 O 0 1 N N N N N N -22.511 11.428 -13.850 3.800 3.464 2.445 O1 A1AH3 23
A1AH3 O10 O2 O 0 1 N N N N N N -19.938 8.189 -8.855 -3.462 0.938 -3.140 O10 A1AH3 24
A1AH3 O11 O3 O 0 1 N N N N N N -17.510 8.838 -8.283 -3.911 2.619 -1.311 O11 A1AH3 25
A1AH3 O12 O4 O 0 1 N N N N N N -17.764 7.190 -12.917 -0.050 2.312 -2.764 O12 A1AH3 26
A1AH3 O13 O5 O 0 1 N N N N N N -19.787 6.306 -11.622 -1.048 3.636 -0.861 O13 A1AH3 27
A1AH3 O14 O6 O 0 1 N N N N N N -22.890 8.944 -15.127 5.692 1.770 2.639 O14 A1AH3 28
A1AH3 O2 O7 O 0 1 N N N N N N -19.721 10.569 -14.845 3.235 0.676 0.333 O2 A1AH3 29
A1AH3 O3 O8 O 0 1 N N N N N N -19.808 8.627 -12.344 0.611 1.830 -0.265 O3 A1AH3 30
A1AH3 O4 O9 O 0 1 N N N N N N -18.117 7.939 -10.579 -1.803 1.242 -1.123 O4 A1AH3 31
A1AH3 O5 O10 O 0 1 N N N N N N -18.277 6.409 -8.600 -4.174 0.177 -0.727 O5 A1AH3 32
A1AH3 O6 O11 O 0 1 N N N N N N -17.314 4.008 -9.880 -5.900 -0.703 1.491 O6 A1AH3 33
A1AH3 O7 O12 O 0 1 N N N N N N -16.177 3.425 -11.809 -7.094 -1.001 3.504 O7 A1AH3 34
A1AH3 O8 O13 O 0 1 N N N N N N -14.089 2.391 -9.695 -8.594 -3.001 1.422 O8 A1AH3 35
A1AH3 O9 O14 O 0 1 N N N N N N -15.832 2.503 -7.486 -7.781 -2.472 -0.933 O9 A1AH3 36
A1AH3 P1 P1 P 0 1 N N N N N N -18.846 7.413 -11.901 -0.583 2.285 -1.245 P1 A1AH3 37
A1AH3 P2 P2 P 0 1 N N N N N N -18.477 7.952 -8.980 -3.350 1.274 -1.570 P2 A1AH3 38
A1AH3 H4 H1 H 0 1 N N N N N N -20.129 11.825 -13.201 2.182 1.666 1.844 H4 A1AH3 39
A1AH3 H5 H2 H 0 1 N N N N N N -18.280 9.916 -12.942 1.524 3.585 0.333 H5 A1AH3 40
A1AH3 H6 H3 H 0 1 N N N N N N -19.261 10.476 -11.545 2.309 2.734 -1.019 H6 A1AH3 41
A1AH3 H7 H4 H 0 1 N N N N N N -16.272 6.326 -9.204 -5.868 -0.210 -1.845 H7 A1AH3 42
A1AH3 H8 H5 H 0 1 N N N N N N -16.548 6.198 -7.433 -6.074 0.963 -0.521 H8 A1AH3 43
A1AH3 H9 H6 H 0 1 N N N N N N -17.695 4.015 -7.834 -5.482 -2.006 -0.091 H9 A1AH3 44
A1AH3 H11 H7 H 0 1 N N N N N N -14.617 4.370 -10.002 -8.799 -0.949 1.686 H11 A1AH3 45
A1AH3 H16 H8 H 0 1 N N N N N N -20.594 6.951 -16.049 7.150 0.631 0.176 H16 A1AH3 46
A1AH3 H2 H9 H 0 1 N N N N N N -21.948 9.882 -12.539 4.153 3.444 0.395 H2 A1AH3 47
A1AH3 H12 H10 H 0 1 N N N N N N -16.594 2.095 -10.297 -6.328 -2.556 2.359 H12 A1AH3 48
A1AH3 H17 H11 H 0 1 N N N N N N -19.009 6.230 -18.079 8.087 -1.470 -1.188 H17 A1AH3 49
A1AH3 H18 H12 H 0 1 N N N N N N -17.791 11.964 -19.184 2.872 -4.302 -0.540 H18 A1AH3 50
A1AH3 H3 H13 H 0 1 N N N N N N -21.102 8.396 -14.224 5.868 1.909 0.571 H3 A1AH3 51
A1AH3 H10 H14 H 0 1 N N N N N N -14.950 4.388 -7.693 -8.061 -0.468 -0.451 H10 A1AH3 52
A1AH3 H19 H15 H 0 1 N N N N N N -16.677 8.101 -20.833 7.859 -3.667 -2.152 H19 A1AH3 53
A1AH3 H20 H16 H 0 1 N N N N N N -16.749 7.086 -19.557 6.937 -5.039 -2.454 H20 A1AH3 54
A1AH3 H1 H17 H 0 1 N N N N N N -22.522 12.066 -13.146 4.577 3.975 2.709 H1 A1AH3 55
A1AH3 H22 H18 H 0 1 N N N N N N -20.090 8.943 -8.297 -3.112 0.070 -3.383 H22 A1AH3 56
A1AH3 H23 H19 H 0 1 N N N N N N -17.834 6.310 -13.267 0.272 1.458 -3.083 H23 A1AH3 57
A1AH3 H21 H20 H 0 1 N N N N N N -22.787 8.291 -15.809 6.086 2.624 2.864 H21 A1AH3 58
A1AH3 H13 H21 H 0 1 N N N N N N -16.991 3.223 -12.255 -6.331 -0.911 4.092 H13 A1AH3 59
A1AH3 H14 H22 H 0 1 N N N N N N -13.793 2.288 -10.592 -8.864 -3.276 2.309 H14 A1AH3 60
A1AH3 H15 H23 H 0 1 N N N N N N -14.997 2.086 -7.309 -8.715 -2.680 -1.077 H15 A1AH3 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AH3 O1 C1 SING N N 1
A1AH3 C1 C2 SING N N 2
A1AH3 C2 C3 SING N N 3
A1AH3 C3 C4 SING N N 4
A1AH3 C4 N1 TRIP N N 5
A1AH3 C3 O2 SING N N 6
A1AH3 O2 C5 SING N N 7
A1AH3 C5 C6 SING N N 8
A1AH3 C6 O3 SING N N 9
A1AH3 O3 P1 SING N N 10
A1AH3 P1 O4 SING N N 11
A1AH3 O4 P2 SING N N 12
A1AH3 P2 O5 SING N N 13
A1AH3 O5 C7 SING N N 14
A1AH3 C7 C8 SING N N 15
A1AH3 C8 C9 SING N N 16
A1AH3 C9 C10 SING N N 17
A1AH3 C10 C11 SING N N 18
A1AH3 C11 O6 SING N N 19
A1AH3 C11 O7 SING N N 20
A1AH3 C10 O8 SING N N 21
A1AH3 C9 O9 SING N N 22
A1AH3 P2 O10 SING N N 23
A1AH3 P2 O11 DOUB N N 24
A1AH3 P1 O12 SING N N 25
A1AH3 P1 O13 DOUB N N 26
A1AH3 C3 C12 SING N N 27
A1AH3 C12 C13 DOUB Y N 28
A1AH3 C13 C14 SING Y N 29
A1AH3 C14 C15 DOUB Y N 30
A1AH3 C15 N2 SING Y N 31
A1AH3 N2 N3 SING Y N 32
A1AH3 N3 C16 DOUB Y N 33
A1AH3 C16 N4 SING Y N 34
A1AH3 N4 C17 DOUB Y N 35
A1AH3 C17 N5 SING N N 36
A1AH3 C2 O14 SING N N 37
A1AH3 C1 C5 SING N N 38
A1AH3 C8 O6 SING N N 39
A1AH3 C12 N2 SING Y N 40
A1AH3 C15 C17 SING Y N 41
A1AH3 C5 H4 SING N N 42
A1AH3 C6 H5 SING N N 43
A1AH3 C6 H6 SING N N 44
A1AH3 C7 H7 SING N N 45
A1AH3 C7 H8 SING N N 46
A1AH3 C8 H9 SING N N 47
A1AH3 C10 H11 SING N N 48
A1AH3 C13 H16 SING N N 49
A1AH3 C1 H2 SING N N 50
A1AH3 C11 H12 SING N N 51
A1AH3 C14 H17 SING N N 52
A1AH3 C16 H18 SING N N 53
A1AH3 C2 H3 SING N N 54
A1AH3 C9 H10 SING N N 55
A1AH3 N5 H19 SING N N 56
A1AH3 N5 H20 SING N N 57
A1AH3 O1 H1 SING N N 58
A1AH3 O10 H22 SING N N 59
A1AH3 O12 H23 SING N N 60
A1AH3 O14 H21 SING N N 61
A1AH3 O7 H13 SING N N 62
A1AH3 O8 H14 SING N N 63
A1AH3 O9 H15 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AH3 SMILES ACDLabs 12.01 "OC1C(O)C(O)OC1COP(=O)(O)OP(=O)(O)OCC1OC(C#N)(C(O)C1O)c1ccc2c(N)ncnn21"
A1AH3 InChI InChI 1.06 "InChI=1S/C17H23N5O14P2/c18-5-17(10-2-1-7-15(19)20-6-21-22(7)10)14(26)12(24)9(35-17)4-33-38(30,31)36-37(28,29)32-3-8-11(23)13(25)16(27)34-8/h1-2,6,8-9,11-14,16,23-27H,3-4H2,(H,28,29)(H,30,31)(H2,19,20,21)/t8-,9-,11-,12-,13-,14-,16-,17+/m1/s1"
A1AH3 InChIKey InChI 1.06 OXUMWBCVIOHGKL-AFOAYCNSSA-N
A1AH3 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnn2c1ccc2[C@@]3(O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O)C#N"
A1AH3 SMILES CACTVS 3.385 "Nc1ncnn2c1ccc2[C]3(O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O)C#N"
A1AH3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)[C@]3([C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)O)O)O)O)O)C#N"
A1AH3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)C3(C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)O)C#N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AH3 "SYSTEMATIC NAME" ACDLabs 12.01 "{(2R,3S,4R,5R)-5-[(8S)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl [(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)"
A1AH3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AH3 'Create component' 2024-03-12 RCSB
A1AH3 'Initial release' 2024-05-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A1AH3 N1 N 4.274 3.727 1
A1AH3 N3 N 4.212 4.878 2
A1AH3 C4 C 5.766 3.571 3
A1AH3 C5 C 8.472 1.312 4
A1AH3 C6 C 8.783 -0.155 5
A1AH3 C7 C 13.999 -5.948 6
A1AH3 C8 C 15.425 -6.411 7
A1AH3 C10 C 17.389 -7.838 8
A1AH3 C13 C 7.945 5.988 9
A1AH3 C15 C 5.743 6.978 10
A1AH3 C17 C 4.531 7.862 11
A1AH3 C1 C 9.475 2.426 12
A1AH3 C11 C 17.852 -6.411 13
A1AH3 C12 C 6.946 4.881 14
A1AH3 C14 C 7.203 7.282 15
A1AH3 C16 C 3.000 5.762 16
A1AH3 C2 C 8.725 3.725 17
A1AH3 C3 C 7.258 3.414 18
A1AH3 C9 C 15.889 -7.838 19
A1AH3 N2 N 5.583 5.486 20
A1AH3 N4 N 3.159 7.254 21
A1AH3 N5 N 4.690 9.353 22
A1AH3 O1 O 10.967 2.270 23
A1AH3 O10 O 12.724 -2.590 24
A1AH3 O11 O 11.797 -5.444 25
A1AH3 O12 O 9.055 -2.398 26
A1AH3 O13 O 11.989 -1.774 27
A1AH3 O14 O 9.335 5.096 28
A1AH3 O2 O 7.101 1.922 29
A1AH3 O3 O 10.210 -0.619 30
A1AH3 O4 O 10.834 -3.554 31
A1AH3 O5 O 13.687 -4.481 32
A1AH3 O6 O 16.639 -5.530 33
A1AH3 O7 O 19.279 -5.948 34
A1AH3 O8 O 18.270 -9.051 35
A1AH3 O9 O 15.007 -9.051 36
A1AH3 P1 P 10.522 -2.086 37
A1AH3 P2 P 12.260 -4.017 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A1AH3 C1 O1 SINGLE BEGINDASH 1
A1AH3 C1 C2 SINGLE NONE 2
A1AH3 C2 C3 SINGLE NONE 3
A1AH3 C3 C4 SINGLE BEGINDASH 4
A1AH3 C4 N1 TRIPLE NONE 5
A1AH3 C3 O2 SINGLE NONE 6
A1AH3 O2 C5 SINGLE NONE 7
A1AH3 C5 C6 SINGLE BEGINWEDGE 8
A1AH3 C6 O3 SINGLE NONE 9
A1AH3 O3 P1 SINGLE NONE 10
A1AH3 P1 O4 SINGLE NONE 11
A1AH3 O4 P2 SINGLE NONE 12
A1AH3 P2 O5 SINGLE NONE 13
A1AH3 O5 C7 SINGLE NONE 14
A1AH3 C8 C7 SINGLE BEGINWEDGE 15
A1AH3 C8 C9 SINGLE NONE 16
A1AH3 C9 C10 SINGLE NONE 17
A1AH3 C10 C11 SINGLE NONE 18
A1AH3 C11 O6 SINGLE NONE 19
A1AH3 C11 O7 SINGLE BEGINWEDGE 20
A1AH3 C10 O8 SINGLE BEGINDASH 21
A1AH3 C9 O9 SINGLE BEGINDASH 22
A1AH3 P2 O10 SINGLE BEGINDASH 23
A1AH3 P2 O11 DOUBLE NONE 24
A1AH3 P1 O12 SINGLE BEGINWEDGE 25
A1AH3 P1 O13 DOUBLE NONE 26
A1AH3 C3 C12 SINGLE NONE 27
A1AH3 C12 C13 DOUBLE NONE 28
A1AH3 C13 C14 SINGLE NONE 29
A1AH3 C14 C15 DOUBLE NONE 30
A1AH3 C15 N2 SINGLE NONE 31
A1AH3 N2 N3 SINGLE NONE 32
A1AH3 N3 C16 DOUBLE NONE 33
A1AH3 C16 N4 SINGLE NONE 34
A1AH3 N4 C17 DOUBLE NONE 35
A1AH3 C17 N5 SINGLE NONE 36
A1AH3 C2 O14 SINGLE BEGINDASH 37
A1AH3 C1 C5 SINGLE NONE 38
A1AH3 C8 O6 SINGLE NONE 39
A1AH3 C12 N2 SINGLE NONE 40
A1AH3 C15 C17 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A1AH3 MurckoScaffold S1 scaffold 'O=[PH](OC[C@@H]1CCCO1)O[PH](=O)OC[C@@H]1CCC(c2ccc3cncnn23)O1' InChI=1S/C16H23N3O7P2/c20-27(23-9-13-2-1-7-22-13)26-28(21)24-10-14-4-6-16(25-14)15-5-3-12-8-17-11-18-19(12)15/h3,5,8,11,13-14,16,27-28H,1-2,4,6-7,9-10H2/t13-,14-,16?/m0/s1 JCRNDFBAKQEMSL-ADTLFGHVSA-N
A1AH3 furanose F1 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
A1AH3 phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
A1AH3 pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
A1AH3 ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A1AH3 N3 S1 1
A1AH3 C5 S1 1
A1AH3 C6 S1 1
A1AH3 C7 S1 1
A1AH3 C8 S1 1
A1AH3 C10 S1 1
A1AH3 C13 S1 1
A1AH3 C15 S1 1
A1AH3 C17 S1 1
A1AH3 C1 S1 1
A1AH3 C11 S1 1
A1AH3 C12 S1 1
A1AH3 C14 S1 1
A1AH3 C16 S1 1
A1AH3 C2 S1 1
A1AH3 C3 S1 1
A1AH3 C9 S1 1
A1AH3 N2 S1 1
A1AH3 N4 S1 1
A1AH3 O11 S1 1
A1AH3 O13 S1 1
A1AH3 O2 S1 1
A1AH3 O3 S1 1
A1AH3 O4 S1 1
A1AH3 O5 S1 1
A1AH3 O6 S1 1
A1AH3 P1 S1 1
A1AH3 P2 S1 1
A1AH3 C9 F1 1
A1AH3 C8 F1 1
A1AH3 O6 F1 1
A1AH3 C11 F1 1
A1AH3 C10 F1 1
A1AH3 O7 F1 1
A1AH3 O10 F2 1
A1AH3 P2 F2 1
A1AH3 O11 F2 1
A1AH3 O4 F2 1
A1AH3 O5 F2 1
A1AH3 O12 F2 2
A1AH3 P1 F2 2
A1AH3 O13 F2 2
A1AH3 O3 F2 2
A1AH3 O4 F2 2
A1AH3 C15 F3 1
A1AH3 C14 F3 1
A1AH3 C13 F3 1
A1AH3 C12 F3 1
A1AH3 N2 F3 1
A1AH3 C10 F4 1
A1AH3 C9 F4 1
A1AH3 C8 F4 1
A1AH3 O6 F4 1
A1AH3 C11 F4 1
A1AH3 C7 F4 1
A1AH3 O5 F4 1
A1AH3 O9 F4 1
A1AH3 O8 F4 1
A1AH3 C2 F4 2
A1AH3 C1 F4 2
A1AH3 C5 F4 2
A1AH3 O2 F4 2
A1AH3 C3 F4 2
A1AH3 C6 F4 2
A1AH3 O3 F4 2
A1AH3 O1 F4 2
A1AH3 O14 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id A1AH3
_pdbe_chem_comp_rdkit_properties.exactmw 583.072
_pdbe_chem_comp_rdkit_properties.amw 583.340
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 19
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 19
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.588
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 244.956
_pdbe_chem_comp_rdkit_properties.tpsa 301.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.809
_pdbe_chem_comp_rdkit_properties.CrippenMR 114.917
_pdbe_chem_comp_rdkit_properties.chi0v 19.135
_pdbe_chem_comp_rdkit_properties.chi1v 11.892
_pdbe_chem_comp_rdkit_properties.chi2v 6.436
_pdbe_chem_comp_rdkit_properties.chi3v 6.436
_pdbe_chem_comp_rdkit_properties.chi4v 4.284
_pdbe_chem_comp_rdkit_properties.chi0n 40.346
_pdbe_chem_comp_rdkit_properties.chi1n 19.723
_pdbe_chem_comp_rdkit_properties.chi2n 4.207
_pdbe_chem_comp_rdkit_properties.chi3n 4.207
_pdbe_chem_comp_rdkit_properties.chi4n 2.649
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.110
_pdbe_chem_comp_rdkit_properties.kappa1 11.406
_pdbe_chem_comp_rdkit_properties.kappa2 10.462
_pdbe_chem_comp_rdkit_properties.kappa3 5.336
_pdbe_chem_comp_rdkit_properties.Phi 3.140
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A1AH3 N1 3.705 -5.089 1.556 ETKDGv3 1
A1AH3 N3 -1.409 -3.986 0.555 ETKDGv3 2
A1AH3 C4 2.861 -4.622 0.916 ETKDGv3 3
A1AH3 C5 1.506 -1.752 0.304 ETKDGv3 4
A1AH3 C6 0.233 -1.102 -0.253 ETKDGv3 5
A1AH3 C7 -0.170 4.607 0.889 ETKDGv3 6
A1AH3 C8 0.348 5.888 0.229 ETKDGv3 7
A1AH3 C10 0.576 8.200 0.704 ETKDGv3 8
A1AH3 C13 1.017 -6.292 -0.759 ETKDGv3 9
A1AH3 C15 -1.212 -6.123 -0.623 ETKDGv3 10
A1AH3 C17 -2.658 -6.306 -0.468 ETKDGv3 11
A1AH3 C1 2.563 -1.952 -0.782 ETKDGv3 12
A1AH3 C11 -0.714 7.897 -0.052 ETKDGv3 13
A1AH3 C12 0.758 -5.088 -0.234 ETKDGv3 14
A1AH3 C14 -0.268 -6.974 -0.997 ETKDGv3 15
A1AH3 C16 -2.692 -4.185 0.696 ETKDGv3 16
A1AH3 C2 2.330 -3.385 -1.190 ETKDGv3 17
A1AH3 C3 1.783 -4.025 0.098 ETKDGv3 18
A1AH3 C9 0.961 6.848 1.250 ETKDGv3 19
A1AH3 N2 -0.652 -4.918 -0.170 ETKDGv3 20
A1AH3 N4 -3.325 -5.371 0.153 ETKDGv3 21
A1AH3 N5 -3.331 -7.463 -0.965 ETKDGv3 22
A1AH3 O1 3.843 -1.788 -0.224 ETKDGv3 23
A1AH3 O10 -0.097 1.664 1.645 ETKDGv3 24
A1AH3 O11 -2.500 2.730 1.467 ETKDGv3 25
A1AH3 O12 -3.236 -0.028 1.403 ETKDGv3 26
A1AH3 O13 -2.720 -1.151 -0.887 ETKDGv3 27
A1AH3 O14 3.510 -3.991 -1.659 ETKDGv3 28
A1AH3 O2 1.181 -3.007 0.872 ETKDGv3 29
A1AH3 O3 -0.704 -0.958 0.789 ETKDGv3 30
A1AH3 O4 -1.748 1.258 -0.581 ETKDGv3 31
A1AH3 O5 -0.658 3.740 -0.109 ETKDGv3 32
A1AH3 O6 -0.708 6.540 -0.446 ETKDGv3 33
A1AH3 O7 -1.817 8.133 0.782 ETKDGv3 34
A1AH3 O8 1.561 8.730 -0.155 ETKDGv3 35
A1AH3 O9 2.356 6.703 1.333 ETKDGv3 36
A1AH3 P1 -2.112 -0.235 0.153 ETKDGv3 37
A1AH3 P2 -1.287 2.346 0.646 ETKDGv3 38
A1AH3 H4 1.907 -1.090 1.104 ETKDGv3 39
A1AH3 H5 0.504 -0.106 -0.673 ETKDGv3 40
A1AH3 H6 -0.174 -1.750 -1.062 ETKDGv3 41
A1AH3 H7 0.673 4.130 1.438 ETKDGv3 42
A1AH3 H8 -0.978 4.881 1.606 ETKDGv3 43
A1AH3 H9 1.119 5.610 -0.526 ETKDGv3 44
A1AH3 H11 0.403 8.924 1.531 ETKDGv3 45
A1AH3 H16 2.000 -6.696 -0.963 ETKDGv3 46
A1AH3 H2 2.421 -1.255 -1.643 ETKDGv3 47
A1AH3 H12 -0.789 8.546 -0.955 ETKDGv3 48
A1AH3 H17 -0.410 -7.991 -1.334 ETKDGv3 49
A1AH3 H18 -3.287 -3.464 1.239 ETKDGv3 50
A1AH3 H3 1.554 -3.390 -1.994 ETKDGv3 51
A1AH3 H10 0.496 6.724 2.257 ETKDGv3 52
A1AH3 H19 -2.812 -8.210 -1.478 ETKDGv3 53
A1AH3 H20 -4.360 -7.571 -0.831 ETKDGv3 54
A1AH3 H1 4.466 -1.617 -0.978 ETKDGv3 55
A1AH3 H22 -0.582 1.337 2.444 ETKDGv3 56
A1AH3 H23 -4.041 0.343 0.961 ETKDGv3 57
A1AH3 H21 3.234 -4.820 -2.128 ETKDGv3 58
A1AH3 H13 -2.625 8.002 0.220 ETKDGv3 59
A1AH3 H14 1.686 8.100 -0.913 ETKDGv3 60
A1AH3 H15 2.521 5.871 1.848 ETKDGv3 61
#