data_A1AK5
#
_chem_comp.id A1AK5
_chem_comp.name
"7-[(1S)-2-methyl-1-{[(6M)-6-{5-[(methylamino)methyl]furan-3-yl}-7H-pyrrolo[2,3-d]pyrimidin-4-yl]amino}propyl]-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H29 N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-04-05
_chem_comp.pdbx_modified_date 2024-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 479.594
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AK5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7GZX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AK5 N1 N1 N 0 1 N N N N N N 3.199 -16.260 17.913 -0.482 -1.102 0.390 N1 A1AK5 1
A1AK5 N3 N2 N 0 1 Y N N N N N 5.937 -15.090 15.018 2.372 -3.468 -1.365 N3 A1AK5 2
A1AK5 C4 C1 C 0 1 Y N N N N N 8.762 -17.707 18.012 4.968 0.437 0.239 C4 A1AK5 3
A1AK5 C5 C2 C 0 1 Y N N N N N 7.568 -16.990 17.536 3.866 -0.503 -0.063 C5 A1AK5 4
A1AK5 C6 C3 C 0 1 Y N N N N N 6.296 -16.962 18.060 2.564 -0.315 0.267 C6 A1AK5 5
A1AK5 C7 C4 C 0 1 Y N N N N N 5.490 -16.194 17.154 1.834 -1.481 -0.220 C7 A1AK5 6
A1AK5 C8 C5 C 0 1 Y N N N N N 4.136 -15.803 17.040 0.491 -1.890 -0.199 C8 A1AK5 7
A1AK5 C10 C6 C 0 1 Y N N N N N 1.848 -14.551 19.080 -2.786 -0.350 0.514 C10 A1AK5 8
A1AK5 C13 C7 C 0 1 Y N N N N N 1.859 -12.381 20.913 -4.487 1.843 0.732 C13 A1AK5 9
A1AK5 C15 C8 C 0 1 Y N N N N N 2.305 -14.727 20.386 -3.959 -0.296 -0.209 C15 A1AK5 10
A1AK5 C17 C9 C 0 1 N N N N N N 2.824 -11.241 22.973 -6.269 3.366 -0.218 C17 A1AK5 11
A1AK5 C20 C10 C 0 1 N N N N N N 0.879 -17.938 17.366 -1.184 -3.691 1.481 C20 A1AK5 12
A1AK5 C21 C11 C 0 1 N N N N N N -0.523 -16.294 18.673 -1.800 -1.724 2.892 C21 A1AK5 13
A1AK5 C22 C12 C 0 1 Y N N N N N 4.658 -14.723 15.078 1.103 -3.811 -1.321 C22 A1AK5 14
A1AK5 C24 C13 C 0 1 Y N N N N N 9.951 -17.864 17.388 4.876 1.630 0.886 C24 A1AK5 15
A1AK5 O1 O1 O 0 1 N N N N N N 4.537 -13.950 22.577 -6.894 -0.432 -0.811 O1 A1AK5 16
A1AK5 S S1 S 0 1 N N N N N N 3.112 -13.921 22.806 -6.267 0.811 -1.095 S A1AK5 17
A1AK5 O O2 O 0 1 N N N N N N 2.502 -15.082 23.406 -5.806 1.118 -2.404 O A1AK5 18
A1AK5 C16 C14 C 0 1 N N N N N N 2.683 -12.524 23.783 -7.236 2.189 -0.414 C16 A1AK5 19
A1AK5 C18 C15 C 0 1 N N N N N N 1.786 -11.205 21.865 -5.341 3.058 0.944 C18 A1AK5 20
A1AK5 C12 C16 C 0 1 Y N N N N N 1.405 -12.232 19.613 -3.296 1.786 1.455 C12 A1AK5 21
A1AK5 C11 C17 C 0 1 Y N N N N N 1.410 -13.282 18.707 -2.453 0.701 1.348 C11 A1AK5 22
A1AK5 C14 C18 C 0 1 Y N N N N N 2.350 -13.648 21.264 -4.804 0.800 -0.106 C14 A1AK5 23
A1AK5 C9 C19 C 0 1 N N S N N N 1.862 -15.693 18.075 -1.878 -1.547 0.401 C9 A1AK5 24
A1AK5 C19 C20 C 0 1 N N N N N N 0.880 -16.822 18.436 -2.107 -2.476 1.596 C19 A1AK5 25
A1AK5 N2 N3 N 0 1 Y N N N N N 3.734 -15.050 15.989 0.178 -3.055 -0.758 N2 A1AK5 26
A1AK5 C23 C21 C 0 1 Y N N N N N 6.321 -15.796 16.100 2.786 -2.320 -0.831 C23 A1AK5 27
A1AK5 N4 N4 N 0 1 Y N N N N N 7.581 -16.288 16.338 4.004 -1.705 -0.722 N4 A1AK5 28
A1AK5 C3 C22 C 0 1 Y N N N N N 8.886 -18.437 19.228 6.389 0.273 -0.092 C3 A1AK5 29
A1AK5 O2 O3 O 0 1 Y N N N N N 10.794 -18.659 18.129 6.101 2.171 0.955 O2 A1AK5 30
A1AK5 C2 C23 C 0 1 Y N N N N N 10.106 -19.003 19.243 7.008 1.370 0.376 C2 A1AK5 31
A1AK5 C1 C24 C 0 1 N N N N N N 10.783 -19.954 20.183 8.484 1.653 0.270 C1 A1AK5 32
A1AK5 N N5 N 0 1 N N N N N N 11.158 -21.204 19.517 8.756 2.379 -0.978 N A1AK5 33
A1AK5 C C25 C 0 1 N N N N N N 9.995 -22.045 19.216 10.188 2.673 -1.115 C A1AK5 34
A1AK5 H10 H1 H 0 1 N N N N N N 3.055 -17.220 17.672 -0.239 -0.256 0.798 H10 A1AK5 35
A1AK5 H9 H2 H 0 1 N N N N N N 5.967 -17.428 18.977 2.147 0.534 0.789 H9 A1AK5 36
A1AK5 H13 H3 H 0 1 N N N N N N 2.625 -15.704 20.717 -4.223 -1.115 -0.862 H13 A1AK5 37
A1AK5 H16 H4 H 0 1 N N N N N N 2.679 -10.375 23.635 -5.681 3.510 -1.125 H16 A1AK5 38
A1AK5 H17 H5 H 0 1 N N N N N N 3.830 -11.199 22.530 -6.835 4.272 -0.003 H17 A1AK5 39
A1AK5 H22 H6 H 0 1 N N N N N N 0.168 -18.725 17.657 -1.348 -4.353 2.332 H22 A1AK5 40
A1AK5 H21 H7 H 0 1 N N N N N N 0.581 -17.515 16.395 -1.403 -4.227 0.557 H21 A1AK5 41
A1AK5 H23 H8 H 0 1 N N N N N N 1.888 -18.368 17.284 -0.146 -3.360 1.472 H23 A1AK5 42
A1AK5 H25 H9 H 0 1 N N N N N N -1.192 -17.130 18.928 -0.762 -1.392 2.884 H25 A1AK5 43
A1AK5 H26 H10 H 0 1 N N N N N N -0.507 -15.571 19.502 -2.457 -0.858 2.974 H26 A1AK5 44
A1AK5 H24 H11 H 0 1 N N N N N N -0.887 -15.798 17.761 -1.963 -2.385 3.743 H24 A1AK5 45
A1AK5 H27 H12 H 0 1 N N N N N N 4.321 -14.073 14.284 0.805 -4.750 -1.764 H27 A1AK5 46
A1AK5 H28 H13 H 0 1 N N N N N N 10.205 -17.424 16.435 3.969 2.068 1.277 H28 A1AK5 47
A1AK5 H15 H14 H 0 1 N N N N N N 1.641 -12.625 24.122 -7.669 1.901 0.544 H15 A1AK5 48
A1AK5 H14 H15 H 0 1 N N N N N N 3.349 -12.475 24.657 -8.026 2.469 -1.111 H14 A1AK5 49
A1AK5 H18 H16 H 0 1 N N N N N N 0.788 -11.195 22.327 -5.943 2.908 1.840 H18 A1AK5 50
A1AK5 H19 H17 H 0 1 N N N N N N 1.931 -10.281 21.285 -4.690 3.917 1.106 H19 A1AK5 51
A1AK5 H12 H18 H 0 1 N N N N N N 1.036 -11.268 19.295 -3.030 2.604 2.108 H12 A1AK5 52
A1AK5 H11 H19 H 0 1 N N N N N N 1.069 -13.113 17.696 -1.534 0.672 1.915 H11 A1AK5 53
A1AK5 H H20 H 0 1 N N N N N N 1.544 -15.282 17.105 -2.096 -2.083 -0.522 H A1AK5 54
A1AK5 H20 H21 H 0 1 N N N N N N 1.229 -17.272 19.377 -3.145 -2.807 1.605 H20 A1AK5 55
A1AK5 H1 H22 H 0 1 N N N N N N 8.377 -16.161 15.746 4.841 -2.062 -1.059 H1 A1AK5 56
A1AK5 H8 H23 H 0 1 N N N N N N 8.135 -18.521 20.000 6.844 -0.560 -0.606 H8 A1AK5 57
A1AK5 H6 H24 H 0 1 N N N N N N 10.097 -20.184 21.012 8.800 2.259 1.119 H6 A1AK5 58
A1AK5 H7 H25 H 0 1 N N N N N N 11.691 -19.476 20.580 9.035 0.713 0.270 H7 A1AK5 59
A1AK5 H5 H26 H 0 1 N N N N N N 11.777 -21.713 20.114 8.206 3.224 -1.031 H5 A1AK5 60
A1AK5 H2 H28 H 0 1 N N N N N N 10.328 -22.968 18.718 10.516 3.287 -0.275 H2 A1AK5 61
A1AK5 H4 H29 H 0 1 N N N N N N 9.475 -22.300 20.151 10.751 1.740 -1.124 H4 A1AK5 62
A1AK5 H3 H30 H 0 1 N N N N N N 9.309 -21.498 18.553 10.361 3.211 -2.047 H3 A1AK5 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AK5 C N SING N N 1
A1AK5 N C1 SING N N 2
A1AK5 C1 C2 SING N N 3
A1AK5 C2 C3 DOUB Y N 4
A1AK5 C3 C4 SING Y N 5
A1AK5 C4 C5 SING N N 6
A1AK5 C5 C6 DOUB Y N 7
A1AK5 C6 C7 SING Y N 8
A1AK5 C7 C8 DOUB Y N 9
A1AK5 C8 N1 SING N N 10
A1AK5 N1 C9 SING N N 11
A1AK5 C9 C10 SING N N 12
A1AK5 C10 C11 DOUB Y N 13
A1AK5 C11 C12 SING Y N 14
A1AK5 C12 C13 DOUB Y N 15
A1AK5 C13 C14 SING Y N 16
A1AK5 C15 C14 DOUB Y N 17
A1AK5 C10 C15 SING Y N 18
A1AK5 C14 S SING N N 19
A1AK5 O S DOUB N N 20
A1AK5 S O1 DOUB N N 21
A1AK5 C16 S SING N N 22
A1AK5 C17 C16 SING N N 23
A1AK5 C18 C17 SING N N 24
A1AK5 C13 C18 SING N N 25
A1AK5 C19 C9 SING N N 26
A1AK5 C20 C19 SING N N 27
A1AK5 C21 C19 SING N N 28
A1AK5 N2 C8 SING Y N 29
A1AK5 C22 N2 DOUB Y N 30
A1AK5 N3 C22 SING Y N 31
A1AK5 C23 N3 DOUB Y N 32
A1AK5 C7 C23 SING Y N 33
A1AK5 N4 C23 SING Y N 34
A1AK5 C5 N4 SING Y N 35
A1AK5 C24 C4 DOUB Y N 36
A1AK5 O2 C24 SING Y N 37
A1AK5 C2 O2 SING Y N 38
A1AK5 N1 H10 SING N N 39
A1AK5 C6 H9 SING N N 40
A1AK5 C15 H13 SING N N 41
A1AK5 C17 H16 SING N N 42
A1AK5 C17 H17 SING N N 43
A1AK5 C20 H22 SING N N 44
A1AK5 C20 H21 SING N N 45
A1AK5 C20 H23 SING N N 46
A1AK5 C21 H25 SING N N 47
A1AK5 C21 H26 SING N N 48
A1AK5 C21 H24 SING N N 49
A1AK5 C22 H27 SING N N 50
A1AK5 C24 H28 SING N N 51
A1AK5 C16 H15 SING N N 52
A1AK5 C16 H14 SING N N 53
A1AK5 C18 H18 SING N N 54
A1AK5 C18 H19 SING N N 55
A1AK5 C12 H12 SING N N 56
A1AK5 C11 H11 SING N N 57
A1AK5 C9 H SING N N 58
A1AK5 C19 H20 SING N N 59
A1AK5 N4 H1 SING N N 60
A1AK5 C3 H8 SING N N 61
A1AK5 C1 H6 SING N N 62
A1AK5 C1 H7 SING N N 63
A1AK5 N H5 SING N N 64
A1AK5 C H2 SING N N 65
A1AK5 C H4 SING N N 66
A1AK5 C H3 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AK5 SMILES ACDLabs 12.01 "CNCc1cc(co1)c1cc2c([NH]1)ncnc2NC(c1ccc2CCCS(=O)(=O)c2c1)C(C)C"
A1AK5 InChI InChI 1.06 "InChI=1S/C25H29N5O3S/c1-15(2)23(17-7-6-16-5-4-8-34(31,32)22(16)10-17)30-25-20-11-21(29-24(20)27-14-28-25)18-9-19(12-26-3)33-13-18/h6-7,9-11,13-15,23,26H,4-5,8,12H2,1-3H3,(H2,27,28,29,30)/t23-/m0/s1"
A1AK5 InChIKey InChI 1.06 UGVZWXXZWQCKKX-QHCPKHFHSA-N
A1AK5 SMILES_CANONICAL CACTVS 3.385 "CNCc1occ(c1)c2[nH]c3ncnc(N[C@@H](C(C)C)c4ccc5CCC[S](=O)(=O)c5c4)c3c2"
A1AK5 SMILES CACTVS 3.385 "CNCc1occ(c1)c2[nH]c3ncnc(N[CH](C(C)C)c4ccc5CCC[S](=O)(=O)c5c4)c3c2"
A1AK5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4cc([nH]c4ncn3)c5cc(oc5)CNC"
A1AK5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4cc([nH]c4ncn3)c5cc(oc5)CNC"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AK5 "SYSTEMATIC NAME" ACDLabs 12.01 "7-[(1S)-2-methyl-1-{[(6M)-6-{5-[(methylamino)methyl]furan-3-yl}-7H-pyrrolo[2,3-d]pyrimidin-4-yl]amino}propyl]-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione"
A1AK5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]-6-[5-(methylaminomethyl)furan-3-yl]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-amine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AK5 'Create component' 2024-04-05 RCSB
A1AK5 'Initial release' 2024-05-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A1AK5 N1 N 10.556 -3.075 1
A1AK5 N3 N 6.659 -5.325 2
A1AK5 C4 C 5.411 -0.164 3
A1AK5 C5 C 6.161 -1.463 4
A1AK5 C6 C 7.644 -1.618 5
A1AK5 C7 C 7.958 -3.075 6
A1AK5 C8 C 9.257 -3.825 7
A1AK5 C10 C 13.154 -3.075 8
A1AK5 C13 C 15.752 -1.575 9
A1AK5 C15 C 14.453 -3.825 10
A1AK5 C17 C 18.452 -1.544 11
A1AK5 C20 C 13.154 -6.075 12
A1AK5 C21 C 10.556 -6.075 13
A1AK5 C22 C 7.958 -6.075 14
A1AK5 C24 C 3.919 -0.007 15
A1AK5 O1 O 16.328 -5.168 16
A1AK5 S S 17.093 -3.877 17
A1AK5 O O 17.828 -5.185 18
A1AK5 C16 C 18.452 -3.107 19
A1AK5 C18 C 17.093 -0.773 20
A1AK5 C12 C 14.453 -0.825 21
A1AK5 C11 C 13.154 -1.575 22
A1AK5 C14 C 15.752 -3.075 23
A1AK5 C9 C 11.855 -3.825 24
A1AK5 C19 C 11.855 -5.325 25
A1AK5 N2 N 9.257 -5.325 26
A1AK5 C23 C 6.659 -3.825 27
A1AK5 N4 N 5.553 -2.825 28
A1AK5 C3 C 6.021 1.206 29
A1AK5 O2 O 3.607 1.460 30
A1AK5 C2 C 4.906 2.210 31
A1AK5 C1 C 5.063 3.702 32
A1AK5 N N 3.850 4.583 33
A1AK5 C C 4.006 6.075 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A1AK5 C N SINGLE NONE 1
A1AK5 N C1 SINGLE NONE 2
A1AK5 C1 C2 SINGLE NONE 3
A1AK5 C2 C3 DOUBLE NONE 4
A1AK5 C3 C4 SINGLE NONE 5
A1AK5 C4 C5 SINGLE NONE 6
A1AK5 C5 C6 DOUBLE NONE 7
A1AK5 C6 C7 SINGLE NONE 8
A1AK5 C7 C8 SINGLE NONE 9
A1AK5 C8 N1 SINGLE NONE 10
A1AK5 C9 N1 SINGLE BEGINDASH 11
A1AK5 C9 C10 SINGLE NONE 12
A1AK5 C10 C11 DOUBLE NONE 13
A1AK5 C11 C12 SINGLE NONE 14
A1AK5 C12 C13 DOUBLE NONE 15
A1AK5 C13 C14 SINGLE NONE 16
A1AK5 C15 C14 DOUBLE NONE 17
A1AK5 C10 C15 SINGLE NONE 18
A1AK5 C14 S SINGLE NONE 19
A1AK5 O S DOUBLE NONE 20
A1AK5 S O1 DOUBLE NONE 21
A1AK5 C16 S SINGLE NONE 22
A1AK5 C17 C16 SINGLE NONE 23
A1AK5 C18 C17 SINGLE NONE 24
A1AK5 C13 C18 SINGLE NONE 25
A1AK5 C19 C9 SINGLE NONE 26
A1AK5 C20 C19 SINGLE NONE 27
A1AK5 C21 C19 SINGLE NONE 28
A1AK5 N2 C8 DOUBLE NONE 29
A1AK5 C22 N2 SINGLE NONE 30
A1AK5 N3 C22 DOUBLE NONE 31
A1AK5 C23 N3 SINGLE NONE 32
A1AK5 C7 C23 DOUBLE NONE 33
A1AK5 N4 C23 SINGLE NONE 34
A1AK5 C5 N4 SINGLE NONE 35
A1AK5 C24 C4 DOUBLE NONE 36
A1AK5 O2 C24 SINGLE NONE 37
A1AK5 C2 O2 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A1AK5 MurckoScaffold S1 scaffold 'O=S1(=O)CCCc2ccc(CNc3ncnc4[nH]c(-c5ccoc5)cc34)cc21' InChI=1S/C20H18N4O3S/c25-28(26)7-1-2-14-4-3-13(8-18(14)28)10-21-19-16-9-17(15-5-6-27-11-15)24-20(16)23-12-22-19/h3-6,8-9,11-12H,1-2,7,10H2,(H2,21,22,23,24) FLNZUZZXIRALMD-UHFFFAOYSA-N
A1AK5 furan F1 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
A1AK5 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
A1AK5 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
A1AK5 pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A1AK5 N1 S1 1
A1AK5 N3 S1 1
A1AK5 C4 S1 1
A1AK5 C5 S1 1
A1AK5 C6 S1 1
A1AK5 C7 S1 1
A1AK5 C8 S1 1
A1AK5 C10 S1 1
A1AK5 C13 S1 1
A1AK5 C15 S1 1
A1AK5 C17 S1 1
A1AK5 C22 S1 1
A1AK5 C24 S1 1
A1AK5 O1 S1 1
A1AK5 S S1 1
A1AK5 O S1 1
A1AK5 C16 S1 1
A1AK5 C18 S1 1
A1AK5 C12 S1 1
A1AK5 C11 S1 1
A1AK5 C14 S1 1
A1AK5 C9 S1 1
A1AK5 N2 S1 1
A1AK5 C23 S1 1
A1AK5 N4 S1 1
A1AK5 C3 S1 1
A1AK5 O2 S1 1
A1AK5 C2 S1 1
A1AK5 C24 F1 1
A1AK5 C4 F1 1
A1AK5 C3 F1 1
A1AK5 C2 F1 1
A1AK5 O2 F1 1
A1AK5 C10 F2 1
A1AK5 C11 F2 1
A1AK5 C12 F2 1
A1AK5 C13 F2 1
A1AK5 C14 F2 1
A1AK5 C15 F2 1
A1AK5 C7 F3 1
A1AK5 C8 F3 1
A1AK5 N2 F3 1
A1AK5 C22 F3 1
A1AK5 N3 F3 1
A1AK5 C23 F3 1
A1AK5 C5 F4 1
A1AK5 C6 F4 1
A1AK5 C7 F4 1
A1AK5 C23 F4 1
A1AK5 N4 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A1AK5
_pdbe_chem_comp_rdkit_properties.exactmw 479.199
_pdbe_chem_comp_rdkit_properties.amw 479.606
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.360
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 239.592
_pdbe_chem_comp_rdkit_properties.tpsa 112.910
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.005
_pdbe_chem_comp_rdkit_properties.CrippenMR 127.792
_pdbe_chem_comp_rdkit_properties.chi0v 17.186
_pdbe_chem_comp_rdkit_properties.chi1v 10.369
_pdbe_chem_comp_rdkit_properties.chi2v 5.434
_pdbe_chem_comp_rdkit_properties.chi3v 5.434
_pdbe_chem_comp_rdkit_properties.chi4v 3.692
_pdbe_chem_comp_rdkit_properties.chi0n 45.369
_pdbe_chem_comp_rdkit_properties.chi1n 23.228
_pdbe_chem_comp_rdkit_properties.chi2n 4.219
_pdbe_chem_comp_rdkit_properties.chi3n 4.219
_pdbe_chem_comp_rdkit_properties.chi4n 2.797
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.170
_pdbe_chem_comp_rdkit_properties.kappa1 6.733
_pdbe_chem_comp_rdkit_properties.kappa2 8.883
_pdbe_chem_comp_rdkit_properties.kappa3 4.210
_pdbe_chem_comp_rdkit_properties.Phi 1.759
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A1AK5 N1 -0.689 -1.447 -1.155 ETKDGv3 1
A1AK5 N3 1.300 -0.682 2.505 ETKDGv3 2
A1AK5 C4 4.716 0.349 -1.018 ETKDGv3 3
A1AK5 C5 3.466 -0.048 -0.343 ETKDGv3 4
A1AK5 C6 2.342 -0.440 -0.955 ETKDGv3 5
A1AK5 C7 1.384 -0.728 0.107 ETKDGv3 6
A1AK5 C8 -0.013 -1.190 0.087 ETKDGv3 7
A1AK5 C10 -3.014 -0.775 -0.768 ETKDGv3 8
A1AK5 C13 -4.631 1.386 0.157 ETKDGv3 9
A1AK5 C15 -3.523 -0.752 0.631 ETKDGv3 10
A1AK5 C17 -6.452 2.223 1.721 ETKDGv3 11
A1AK5 C20 -3.762 -3.774 -0.933 ETKDGv3 12
A1AK5 C21 -1.336 -4.308 -1.259 ETKDGv3 13
A1AK5 C22 0.061 -1.094 2.492 ETKDGv3 14
A1AK5 C24 4.936 0.387 -2.328 ETKDGv3 15
A1AK5 O1 -3.730 0.162 3.685 ETKDGv3 16
A1AK5 S -4.880 0.247 2.721 ETKDGv3 17
A1AK5 O -5.794 -0.930 2.911 ETKDGv3 18
A1AK5 C16 -5.786 1.752 3.013 ETKDGv3 19
A1AK5 C18 -5.419 2.582 0.645 ETKDGv3 20
A1AK5 C12 -4.147 1.378 -1.097 ETKDGv3 21
A1AK5 C11 -3.310 0.261 -1.575 ETKDGv3 22
A1AK5 C14 -4.278 0.265 1.070 ETKDGv3 23
A1AK5 C9 -2.090 -1.873 -1.283 ETKDGv3 24
A1AK5 C19 -2.326 -3.288 -0.674 ETKDGv3 25
A1AK5 N2 -0.612 -1.356 1.237 ETKDGv3 26
A1AK5 C23 1.975 -0.497 1.255 ETKDGv3 27
A1AK5 N4 3.310 -0.058 1.079 ETKDGv3 28
A1AK5 C3 5.946 0.781 -0.359 ETKDGv3 29
A1AK5 O2 6.234 0.816 -2.570 ETKDGv3 30
A1AK5 C2 6.811 1.043 -1.328 ETKDGv3 31
A1AK5 C1 8.209 1.542 -1.132 ETKDGv3 32
A1AK5 N 8.200 2.943 -0.689 ETKDGv3 33
A1AK5 C 7.937 3.852 -1.808 ETKDGv3 34
A1AK5 H10 -0.155 -1.300 -2.041 ETKDGv3 35
A1AK5 H9 2.179 -0.525 -2.021 ETKDGv3 36
A1AK5 H13 -3.292 -1.560 1.309 ETKDGv3 37
A1AK5 H16 -7.060 3.126 1.947 ETKDGv3 38
A1AK5 H17 -7.143 1.439 1.339 ETKDGv3 39
A1AK5 H22 -4.503 -3.097 -0.462 ETKDGv3 40
A1AK5 H21 -3.910 -4.785 -0.497 ETKDGv3 41
A1AK5 H23 -3.969 -3.823 -2.024 ETKDGv3 42
A1AK5 H25 -1.528 -5.318 -0.837 ETKDGv3 43
A1AK5 H26 -0.292 -4.033 -0.999 ETKDGv3 44
A1AK5 H24 -1.430 -4.358 -2.365 ETKDGv3 45
A1AK5 H27 -0.468 -1.239 3.424 ETKDGv3 46
A1AK5 H28 4.227 0.127 -3.102 ETKDGv3 47
A1AK5 H15 -5.093 2.534 3.390 ETKDGv3 48
A1AK5 H14 -6.560 1.567 3.788 ETKDGv3 49
A1AK5 H18 -4.712 3.342 1.041 ETKDGv3 50
A1AK5 H19 -5.965 3.046 -0.206 ETKDGv3 51
A1AK5 H12 -4.351 2.200 -1.773 ETKDGv3 52
A1AK5 H11 -2.927 0.299 -2.587 ETKDGv3 53
A1AK5 H -2.298 -1.984 -2.373 ETKDGv3 54
A1AK5 H20 -2.161 -3.271 0.422 ETKDGv3 55
A1AK5 H1 4.004 0.196 1.816 ETKDGv3 56
A1AK5 H8 6.126 0.881 0.703 ETKDGv3 57
A1AK5 H6 8.700 0.916 -0.356 ETKDGv3 58
A1AK5 H7 8.793 1.419 -2.072 ETKDGv3 59
A1AK5 H5 9.156 3.167 -0.326 ETKDGv3 60
A1AK5 H2 6.934 3.655 -2.243 ETKDGv3 61
A1AK5 H4 8.715 3.749 -2.596 ETKDGv3 62
A1AK5 H3 7.948 4.899 -1.439 ETKDGv3 63
#