data_A1AKS
#
_chem_comp.id A1AKS
_chem_comp.name "(2R)-(2,3-dihydro-1,4-benzodioxin-6-yl)[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]acetic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H14 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-04-04
_chem_comp.pdbx_modified_date 2024-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 326.307
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AKS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7GZJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AKS N1 N1 N 0 1 Y N N N N N 1.107 11.872 -6.991 -2.688 -1.189 -0.997 N1 A1AKS 1
A1AKS N3 N2 N 0 1 Y N N N N N -0.533 8.414 -8.343 -5.496 1.623 -0.194 N3 A1AKS 2
A1AKS C4 C1 C 0 1 Y N N N N N 0.039 9.621 -8.053 -4.695 0.582 -0.573 C4 A1AKS 3
A1AKS C5 C2 C 0 1 Y N N N N N -1.409 8.104 -7.332 -4.790 2.498 0.591 C5 A1AKS 4
A1AKS C6 C3 C 0 1 Y N N N N N -1.416 9.090 -6.399 -3.530 2.057 0.742 C6 A1AKS 5
A1AKS C7 C4 C 0 1 Y N N N N N -0.498 10.080 -6.844 -3.428 0.805 -0.005 C7 A1AKS 6
A1AKS C8 C5 C 0 1 Y N N N N N -0.212 14.137 -4.472 1.254 -0.287 0.164 C8 A1AKS 7
A1AKS C10 C6 C 0 1 Y N N N N N -2.161 15.560 -4.638 2.717 1.238 1.291 C10 A1AKS 8
A1AKS C13 C7 C 0 1 Y N N N N N 0.612 15.256 -4.530 2.266 -0.608 -0.723 C13 A1AKS 9
A1AKS C15 C8 C 0 1 N N N N N N -1.154 18.754 -5.766 6.050 0.913 -0.137 C15 A1AKS 10
A1AKS O O1 O 0 1 N N N N N N 0.085 11.141 -2.609 -1.073 -2.047 1.872 O A1AKS 11
A1AKS C C9 C 0 1 N N N N N N 0.448 12.257 -2.941 -0.206 -2.068 1.030 C A1AKS 12
A1AKS O1 O2 O 0 1 N N N N N N 0.933 13.141 -2.110 0.658 -3.094 0.983 O1 A1AKS 13
A1AKS C1 C10 C 0 1 N N S N N N 0.412 12.750 -4.384 -0.096 -0.943 0.033 C1 A1AKS 14
A1AKS N N3 N 0 1 N N N N N N -0.344 11.811 -5.186 -1.146 0.045 0.294 N A1AKS 15
A1AKS C2 C11 C 0 1 Y N N N N N 0.095 11.267 -6.334 -2.409 -0.130 -0.243 C2 A1AKS 16
A1AKS N2 N4 N 0 1 Y N N N N N 1.017 10.225 -8.751 -4.877 -0.510 -1.315 N2 A1AKS 17
A1AKS C3 C12 C 0 1 Y N N N N N 1.487 11.323 -8.150 -3.893 -1.360 -1.512 C3 A1AKS 18
A1AKS C12 C13 C 0 1 Y N N N N N 0.064 16.519 -4.647 3.509 -0.006 -0.605 C12 A1AKS 19
A1AKS O2 O3 O 0 1 N N N N N N 0.926 17.593 -4.718 4.497 -0.336 -1.482 O2 A1AKS 20
A1AKS C14 C14 C 0 1 N N N N N N 0.418 18.734 -5.464 5.610 0.561 -1.564 C14 A1AKS 21
A1AKS O3 O4 O 0 1 N N N N N N -1.925 17.900 -4.902 4.944 1.535 0.530 O3 A1AKS 22
A1AKS C11 C15 C 0 1 Y N N N N N -1.338 16.674 -4.711 3.735 0.922 0.405 C11 A1AKS 23
A1AKS C9 C16 C 0 1 Y N N N N N -1.592 14.303 -4.518 1.482 0.629 1.173 C9 A1AKS 24
A1AKS H1 H1 H 0 1 N N N N N N -0.346 7.854 -9.150 -6.428 1.728 -0.443 H1 A1AKS 25
A1AKS H5 H2 H 0 1 N N N N N N -2.006 7.205 -7.286 -5.187 3.405 1.023 H5 A1AKS 26
A1AKS H6 H3 H 0 1 N N N N N N -2.005 9.117 -5.494 -2.744 2.536 1.307 H6 A1AKS 27
A1AKS H8 H4 H 0 1 N N N N N N -3.235 15.672 -4.674 2.891 1.958 2.078 H8 A1AKS 28
A1AKS H9 H5 H 0 1 N N N N N N 1.684 15.137 -4.483 2.087 -1.329 -1.507 H9 A1AKS 29
A1AKS H12 H6 H 0 1 N N N N N N -1.516 19.786 -5.646 6.341 0.005 0.393 H12 A1AKS 30
A1AKS H13 H7 H 0 1 N N N N N N -1.311 18.428 -6.805 6.893 1.604 -0.172 H13 A1AKS 31
A1AKS H2 H8 H 0 1 N N N N N N 0.953 12.775 -1.234 0.548 -3.792 1.643 H2 A1AKS 32
A1AKS H H9 H 0 1 N N N N N N 1.444 12.807 -4.759 -0.212 -1.339 -0.976 H A1AKS 33
A1AKS H3 H10 H 0 1 N N N N N N -0.543 11.040 -4.581 -0.956 0.821 0.843 H3 A1AKS 34
A1AKS H4 H11 H 0 1 N N N N N N 2.281 11.836 -8.671 -4.077 -2.234 -2.119 H4 A1AKS 35
A1AKS H10 H12 H 0 1 N N N N N N 0.659 19.641 -4.890 5.313 1.467 -2.092 H10 A1AKS 36
A1AKS H11 H13 H 0 1 N N N N N N 0.943 18.761 -6.430 6.432 0.079 -2.094 H11 A1AKS 37
A1AKS H7 H14 H 0 1 N N N N N N -2.232 13.435 -4.459 0.691 0.874 1.867 H7 A1AKS 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AKS C O DOUB N N 1
A1AKS O1 C SING N N 2
A1AKS C1 C SING N N 3
A1AKS N C1 SING N N 4
A1AKS C2 N SING N N 5
A1AKS C2 N1 DOUB Y N 6
A1AKS N1 C3 SING Y N 7
A1AKS C3 N2 DOUB Y N 8
A1AKS N2 C4 SING Y N 9
A1AKS C4 N3 SING Y N 10
A1AKS N3 C5 SING Y N 11
A1AKS C5 C6 DOUB Y N 12
A1AKS C6 C7 SING Y N 13
A1AKS C7 C2 SING Y N 14
A1AKS C4 C7 DOUB Y N 15
A1AKS C8 C1 SING N N 16
A1AKS C8 C9 DOUB Y N 17
A1AKS C9 C10 SING Y N 18
A1AKS C10 C11 DOUB Y N 19
A1AKS C11 C12 SING Y N 20
A1AKS C12 C13 DOUB Y N 21
A1AKS C13 C8 SING Y N 22
A1AKS O2 C12 SING N N 23
A1AKS C14 O2 SING N N 24
A1AKS C15 C14 SING N N 25
A1AKS O3 C15 SING N N 26
A1AKS C11 O3 SING N N 27
A1AKS N3 H1 SING N N 28
A1AKS C5 H5 SING N N 29
A1AKS C6 H6 SING N N 30
A1AKS C10 H8 SING N N 31
A1AKS C13 H9 SING N N 32
A1AKS C15 H12 SING N N 33
A1AKS C15 H13 SING N N 34
A1AKS O1 H2 SING N N 35
A1AKS C1 H SING N N 36
A1AKS N H3 SING N N 37
A1AKS C3 H4 SING N N 38
A1AKS C14 H10 SING N N 39
A1AKS C14 H11 SING N N 40
A1AKS C9 H7 SING N N 41
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AKS SMILES ACDLabs 12.01 "O=C(O)C(Nc1ncnc2[NH]ccc21)c1ccc2OCCOc2c1"
A1AKS InChI InChI 1.06 "InChI=1S/C16H14N4O4/c21-16(22)13(9-1-2-11-12(7-9)24-6-5-23-11)20-15-10-3-4-17-14(10)18-8-19-15/h1-4,7-8,13H,5-6H2,(H,21,22)(H2,17,18,19,20)"
A1AKS InChIKey InChI 1.06 FHHVXLFEHODNRQ-UHFFFAOYSA-N
A1AKS SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@H](Nc1ncnc2[nH]ccc12)c3ccc4OCCOc4c3"
A1AKS SMILES CACTVS 3.385 "OC(=O)[CH](Nc1ncnc2[nH]ccc12)c3ccc4OCCOc4c3"
A1AKS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1[C@@H](C(=O)O)Nc3c4cc[nH]c4ncn3)OCCO2"
A1AKS SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(C(=O)O)Nc3c4cc[nH]c4ncn3)OCCO2"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AKS "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-(2,3-dihydro-1,4-benzodioxin-6-yl)[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]acetic acid"
A1AKS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-(2,3-dihydro-1,4-benzodioxin-6-yl)-2-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AKS 'Create component' 2024-04-04 RCSB
A1AKS 'Initial release' 2024-05-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A1AKS N1 N 0.442 -3.156 1
A1AKS N3 N -3.576 -5.133 2
A1AKS C4 C -2.149 -4.664 3
A1AKS C5 C -4.459 -3.922 4
A1AKS C6 C -3.583 -2.704 5
A1AKS C7 C -2.156 -3.164 6
A1AKS C8 C 0.427 1.347 7
A1AKS C10 C -0.879 3.591 8
A1AKS C13 C 1.721 2.100 9
A1AKS C15 C 1.706 6.599 10
A1AKS O O 3.030 -0.145 11
A1AKS C C 1.734 -0.900 12
A1AKS O1 O 1.739 -2.400 13
A1AKS C1 C 0.432 -0.155 14
A1AKS N N -0.864 -0.910 15
A1AKS C2 C -0.858 -2.409 16
A1AKS N2 N -0.849 -5.410 17
A1AKS C3 C 0.450 -4.655 18
A1AKS C12 C 1.718 3.601 19
A1AKS O2 O 3.013 4.354 20
A1AKS C14 C 3.011 5.855 21
A1AKS O3 O 0.412 5.846 22
A1AKS C11 C 0.415 4.345 23
A1AKS C9 C -0.877 2.090 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A1AKS C O DOUBLE NONE 1
A1AKS O1 C SINGLE NONE 2
A1AKS C1 C SINGLE NONE 3
A1AKS C1 N SINGLE BEGINWEDGE 4
A1AKS C2 N SINGLE NONE 5
A1AKS C2 N1 DOUBLE NONE 6
A1AKS N1 C3 SINGLE NONE 7
A1AKS C3 N2 DOUBLE NONE 8
A1AKS N2 C4 SINGLE NONE 9
A1AKS C4 N3 SINGLE NONE 10
A1AKS N3 C5 SINGLE NONE 11
A1AKS C5 C6 DOUBLE NONE 12
A1AKS C6 C7 SINGLE NONE 13
A1AKS C7 C2 SINGLE NONE 14
A1AKS C4 C7 DOUBLE NONE 15
A1AKS C8 C1 SINGLE NONE 16
A1AKS C8 C9 SINGLE NONE 17
A1AKS C9 C10 DOUBLE NONE 18
A1AKS C10 C11 SINGLE NONE 19
A1AKS C11 C12 DOUBLE NONE 20
A1AKS C12 C13 SINGLE NONE 21
A1AKS C13 C8 DOUBLE NONE 22
A1AKS O2 C12 SINGLE NONE 23
A1AKS C14 O2 SINGLE NONE 24
A1AKS C15 C14 SINGLE NONE 25
A1AKS O3 C15 SINGLE NONE 26
A1AKS C11 O3 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A1AKS MurckoScaffold S1 scaffold 'c1nc(NCc2ccc3c(c2)OCCO3)c2cc[nH]c2n1' InChI=1S/C15H14N4O2/c1-2-12-13(21-6-5-20-12)7-10(1)8-17-15-11-3-4-16-14(11)18-9-19-15/h1-4,7,9H,5-6,8H2,(H2,16,17,18,19) JYDUAJWNDNVAOJ-UHFFFAOYSA-N
A1AKS peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
A1AKS phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
A1AKS pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
A1AKS pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
A1AKS Z2856434918 F5 fragment CCOc1ccc(CC(=O)O)cc1 InChI=1S/C10H12O3/c1-2-13-9-5-3-8(4-6-9)7-10(11)12/h3-6H,2,7H2,1H3,(H,11,12) ZVVWZNFSMIFGEP-UHFFFAOYSA-N
A1AKS Z56755722 F6 fragment COc1ccc(C(N)C(=O)O)cc1 InChI=1S/C9H11NO3/c1-13-7-4-2-6(3-5-7)8(10)9(11)12/h2-5,8H,10H2,1H3,(H,11,12) GXUAKXUIILGDKW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A1AKS N1 S1 1
A1AKS N3 S1 1
A1AKS C4 S1 1
A1AKS C5 S1 1
A1AKS C6 S1 1
A1AKS C7 S1 1
A1AKS C8 S1 1
A1AKS C10 S1 1
A1AKS C13 S1 1
A1AKS C15 S1 1
A1AKS C1 S1 1
A1AKS N S1 1
A1AKS C2 S1 1
A1AKS N2 S1 1
A1AKS C3 S1 1
A1AKS C12 S1 1
A1AKS O2 S1 1
A1AKS C14 S1 1
A1AKS O3 S1 1
A1AKS C11 S1 1
A1AKS C9 S1 1
A1AKS O F1 1
A1AKS C F1 1
A1AKS C1 F1 1
A1AKS N F1 1
A1AKS C8 F2 1
A1AKS C9 F2 1
A1AKS C10 F2 1
A1AKS C11 F2 1
A1AKS C12 F2 1
A1AKS C13 F2 1
A1AKS C7 F3 1
A1AKS C2 F3 1
A1AKS N1 F3 1
A1AKS C3 F3 1
A1AKS N2 F3 1
A1AKS C4 F3 1
A1AKS C4 F4 1
A1AKS C7 F4 1
A1AKS C6 F4 1
A1AKS C5 F4 1
A1AKS N3 F4 1
A1AKS C14 F5 1
A1AKS C15 F5 1
A1AKS O3 F5 1
A1AKS C11 F5 1
A1AKS C10 F5 1
A1AKS C9 F5 1
A1AKS C8 F5 1
A1AKS C1 F5 1
A1AKS C F5 1
A1AKS O F5 1
A1AKS O1 F5 1
A1AKS C13 F5 1
A1AKS C12 F5 1
A1AKS C15 F6 1
A1AKS O3 F6 1
A1AKS C11 F6 1
A1AKS C10 F6 1
A1AKS C9 F6 1
A1AKS C8 F6 1
A1AKS C13 F6 1
A1AKS C12 F6 1
A1AKS C1 F6 1
A1AKS N F6 1
A1AKS C F6 1
A1AKS O F6 1
A1AKS O1 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A1AKS
_pdbe_chem_comp_rdkit_properties.exactmw 326.102
_pdbe_chem_comp_rdkit_properties.amw 326.312
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.188
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 155.878
_pdbe_chem_comp_rdkit_properties.tpsa 109.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.178
_pdbe_chem_comp_rdkit_properties.CrippenMR 80.804
_pdbe_chem_comp_rdkit_properties.chi0v 11.422
_pdbe_chem_comp_rdkit_properties.chi1v 6.264
_pdbe_chem_comp_rdkit_properties.chi2v 2.843
_pdbe_chem_comp_rdkit_properties.chi3v 2.843
_pdbe_chem_comp_rdkit_properties.chi4v 1.835
_pdbe_chem_comp_rdkit_properties.chi0n 25.422
_pdbe_chem_comp_rdkit_properties.chi1n 13.066
_pdbe_chem_comp_rdkit_properties.chi2n 2.843
_pdbe_chem_comp_rdkit_properties.chi3n 2.843
_pdbe_chem_comp_rdkit_properties.chi4n 1.835
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.290
_pdbe_chem_comp_rdkit_properties.kappa1 5.658
_pdbe_chem_comp_rdkit_properties.kappa2 5.727
_pdbe_chem_comp_rdkit_properties.kappa3 2.473
_pdbe_chem_comp_rdkit_properties.Phi 1.350
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A1AKS N1 -3.001 -1.868 0.054 ETKDGv3 1
A1AKS N3 -5.596 0.428 -2.205 ETKDGv3 2
A1AKS C4 -4.794 -0.446 -1.431 ETKDGv3 3
A1AKS C5 -4.759 1.572 -2.381 ETKDGv3 4
A1AKS C6 -3.581 1.403 -1.777 ETKDGv3 5
A1AKS C7 -3.624 0.080 -1.164 ETKDGv3 6
A1AKS C8 0.987 -0.223 0.651 ETKDGv3 7
A1AKS C10 2.417 1.752 0.951 ETKDGv3 8
A1AKS C13 2.022 -0.927 0.153 ETKDGv3 9
A1AKS C15 5.825 0.940 -0.538 ETKDGv3 10
A1AKS O -0.497 -1.815 2.966 ETKDGv3 11
A1AKS C -0.817 -0.854 2.217 ETKDGv3 12
A1AKS O1 -1.532 0.221 2.738 ETKDGv3 13
A1AKS C1 -0.385 -0.852 0.778 ETKDGv3 14
A1AKS N -1.361 -0.133 -0.049 ETKDGv3 15
A1AKS C2 -2.651 -0.679 -0.364 ETKDGv3 16
A1AKS N2 -5.162 -1.750 -0.966 ETKDGv3 17
A1AKS C3 -4.301 -2.428 -0.255 ETKDGv3 18
A1AKS C12 3.358 -0.307 0.035 ETKDGv3 19
A1AKS O2 4.441 -1.050 -0.453 ETKDGv3 20
A1AKS C14 5.784 -0.577 -0.329 ETKDGv3 21
A1AKS O3 4.800 1.566 0.237 ETKDGv3 22
A1AKS C11 3.541 0.975 0.394 ETKDGv3 23
A1AKS C9 1.209 1.188 1.072 ETKDGv3 24
A1AKS H1 -6.566 0.274 -2.559 ETKDGv3 25
A1AKS H5 -5.049 2.457 -2.932 ETKDGv3 26
A1AKS H6 -2.767 2.116 -1.756 ETKDGv3 27
A1AKS H8 2.570 2.779 1.255 ETKDGv3 28
A1AKS H9 1.896 -1.956 -0.161 ETKDGv3 29
A1AKS H12 5.652 1.164 -1.613 ETKDGv3 30
A1AKS H13 6.816 1.344 -0.244 ETKDGv3 31
A1AKS H2 -1.814 0.235 3.711 ETKDGv3 32
A1AKS H -0.343 -1.908 0.427 ETKDGv3 33
A1AKS H3 -1.134 0.826 -0.397 ETKDGv3 34
A1AKS H4 -4.559 -3.414 0.105 ETKDGv3 35
A1AKS H10 6.157 -0.815 0.691 ETKDGv3 36
A1AKS H11 6.430 -1.088 -1.073 ETKDGv3 37
A1AKS H7 0.390 1.770 1.476 ETKDGv3 38
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