data_A1AMD
#
_chem_comp.id A1AMD
_chem_comp.name
"(4M)-4-(4-{[(1R)-1-(2,3-dihydro[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1-methyl-1H-pyrazole-5-carbonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H22 N8 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-04-11
_chem_comp.pdbx_modified_date 2024-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 430.462
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AMD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7H0B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AMD N1 N1 N 0 1 Y N N N N N 8.950 -6.916 18.532 0.062 -2.891 0.784 N1 A1AMD 1
A1AMD N3 N2 N 0 1 Y N N N N N 5.134 -7.988 19.388 -3.543 -1.037 0.986 N3 A1AMD 2
A1AMD C4 C1 C 0 1 Y N N N N N 8.474 -8.129 18.175 -0.114 -1.673 0.280 C4 A1AMD 3
A1AMD C5 C2 C 0 1 Y N N N N N 8.111 -6.082 19.156 -0.933 -3.537 1.367 C5 A1AMD 4
A1AMD C6 C3 C 0 1 Y N N N N N 6.377 -7.480 19.116 -2.416 -1.814 1.013 C6 A1AMD 5
A1AMD C7 C4 C 0 1 Y N N N N N 5.069 -9.286 18.911 -3.272 0.162 0.361 C7 A1AMD 6
A1AMD C8 C5 C 0 1 Y N N N N N 3.913 -10.144 19.158 -4.246 1.251 0.148 C8 A1AMD 7
A1AMD C10 C6 C 0 1 N N N N N N 1.794 -13.104 18.907 -7.494 2.699 -0.651 C10 A1AMD 8
A1AMD C13 C7 C 0 1 Y N N N N N 6.268 -9.608 18.313 -1.970 0.185 -0.027 C13 A1AMD 9
A1AMD C15 C8 C 0 1 Y N N N N N 10.819 -8.612 15.655 3.303 -0.659 0.041 C15 A1AMD 10
A1AMD C17 C9 C 0 1 Y N N N N N 11.320 -7.366 13.679 4.995 -0.038 1.607 C17 A1AMD 11
A1AMD C20 C10 C 0 1 N N N N N N 10.215 -10.753 11.540 5.316 3.533 -0.416 C20 A1AMD 12
A1AMD C21 C11 C 0 1 N N N N N N 10.291 -9.377 10.837 6.563 2.971 0.281 C21 A1AMD 13
A1AMD N6 N3 N 0 1 N N N N N N 5.087 -12.876 17.030 -6.827 -1.104 -0.631 N6 A1AMD 14
A1AMD C12 C12 C 0 1 N N N N N N 4.477 -12.256 17.778 -6.278 -0.126 -0.446 C12 A1AMD 15
A1AMD C11 C13 C 0 1 Y N N N N N 3.709 -11.449 18.671 -5.586 1.105 -0.212 C11 A1AMD 16
A1AMD N5 N4 N 0 1 Y N N N N N 2.494 -11.847 19.139 -6.111 2.365 -0.300 N5 A1AMD 17
A1AMD N4 N5 N 0 1 Y N N N N N 1.900 -10.881 19.905 -5.097 3.280 0.006 N4 A1AMD 18
A1AMD C9 C14 C 0 1 Y N N N N N 2.754 -9.866 19.911 -3.997 2.630 0.276 C9 A1AMD 19
A1AMD C14 C15 C 0 1 Y N N N N N 7.118 -8.463 18.444 -1.387 -1.087 0.382 C14 A1AMD 20
A1AMD N2 N6 N 0 1 Y N N N N N 6.824 -6.277 19.489 -2.140 -3.028 1.485 N2 A1AMD 21
A1AMD N N7 N 0 1 N N N N N N 9.304 -9.008 17.554 0.929 -1.001 -0.329 N A1AMD 22
A1AMD C3 C16 C 0 1 N N S N N N 10.684 -8.732 17.161 2.249 -1.629 -0.425 C3 A1AMD 23
A1AMD C1 C17 C 0 1 N N N N N N 11.636 -9.812 17.739 2.523 -2.021 -1.879 C1 A1AMD 24
A1AMD C2 C18 C 0 1 N N N N N N 13.073 -9.613 17.250 3.866 -2.749 -1.967 C2 A1AMD 25
A1AMD C C19 C 0 1 N N N N N N 11.597 -9.818 19.267 1.409 -2.944 -2.377 C A1AMD 26
A1AMD N7 N8 N 0 1 Y N N N N N 10.358 -9.651 14.944 3.521 0.445 -0.649 N7 A1AMD 27
A1AMD C19 C20 C 0 1 Y N N N N N 10.378 -9.554 13.624 4.435 1.329 -0.282 C19 A1AMD 28
A1AMD O O1 O 0 1 N N N N N N 9.932 -10.658 12.957 4.619 2.447 -1.035 O A1AMD 29
A1AMD O1 O2 O 0 1 N N N N N N 11.001 -8.363 11.570 6.141 2.013 1.255 O1 A1AMD 30
A1AMD C18 C21 C 0 1 Y N N N N N 10.865 -8.440 12.935 5.199 1.114 0.861 C18 A1AMD 31
A1AMD C16 C22 C 0 1 Y N N N N N 11.307 -7.461 15.061 4.023 -0.934 1.186 C16 A1AMD 32
A1AMD H1 H1 H 0 1 N N N N N N 4.395 -7.501 19.854 -4.404 -1.292 1.353 H1 A1AMD 33
A1AMD H10 H2 H 0 1 N N N N N N 8.524 -5.122 19.429 -0.747 -4.525 1.762 H10 A1AMD 34
A1AMD H13 H3 H 0 1 N N N N N N 0.822 -13.083 19.421 -8.099 2.741 0.254 H13 A1AMD 35
A1AMD H14 H4 H 0 1 N N N N N N 1.634 -13.241 17.827 -7.518 3.668 -1.150 H14 A1AMD 36
A1AMD H12 H5 H 0 1 N N N N N N 2.397 -13.937 19.297 -7.892 1.936 -1.320 H12 A1AMD 37
A1AMD H15 H6 H 0 1 N N N N N N 6.519 -10.544 17.837 -1.465 0.990 -0.541 H15 A1AMD 38
A1AMD H17 H7 H 0 1 N N N N N N 11.678 -6.471 13.192 5.576 -0.230 2.497 H17 A1AMD 39
A1AMD H18 H8 H 0 1 N N N N N N 11.180 -11.265 11.410 4.670 4.013 0.319 H18 A1AMD 40
A1AMD H19 H9 H 0 1 N N N N N N 9.419 -11.345 11.064 5.613 4.258 -1.173 H19 A1AMD 41
A1AMD H20 H10 H 0 1 N N N N N N 10.794 -9.515 9.869 7.207 2.486 -0.453 H20 A1AMD 42
A1AMD H21 H11 H 0 1 N N N N N N 9.264 -9.022 10.669 7.107 3.780 0.769 H21 A1AMD 43
A1AMD H11 H12 H 0 1 N N N N N N 2.582 -8.936 20.432 -3.052 3.076 0.550 H11 A1AMD 44
A1AMD H9 H13 H 0 1 N N N N N N 8.834 -9.266 16.710 0.788 -0.112 -0.692 H9 A1AMD 45
A1AMD H H14 H 0 1 N N N N N N 10.982 -7.768 17.599 2.273 -2.521 0.202 H A1AMD 46
A1AMD H5 H15 H 0 1 N N N N N N 11.287 -10.793 17.384 2.555 -1.123 -2.497 H5 A1AMD 47
A1AMD H7 H16 H 0 1 N N N N N N 13.090 -9.610 16.150 3.860 -3.603 -1.291 H7 A1AMD 48
A1AMD H6 H17 H 0 1 N N N N N N 13.458 -8.653 17.625 4.025 -3.094 -2.988 H6 A1AMD 49
A1AMD H8 H18 H 0 1 N N N N N N 13.704 -10.433 17.624 4.668 -2.067 -1.684 H8 A1AMD 50
A1AMD H3 H19 H 0 1 N N N N N N 10.561 -9.961 19.607 0.452 -2.425 -2.314 H3 A1AMD 51
A1AMD H4 H20 H 0 1 N N N N N N 12.224 -10.638 19.646 1.604 -3.222 -3.412 H4 A1AMD 52
A1AMD H2 H21 H 0 1 N N N N N N 11.978 -8.859 19.647 1.377 -3.841 -1.759 H2 A1AMD 53
A1AMD H16 H22 H 0 1 N N N N N N 11.673 -6.646 15.668 3.834 -1.839 1.745 H16 A1AMD 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AMD C C1 SING N N 1
A1AMD C2 C1 SING N N 2
A1AMD C1 C3 SING N N 3
A1AMD C3 N SING N N 4
A1AMD N C4 SING N N 5
A1AMD C4 N1 DOUB Y N 6
A1AMD N1 C5 SING Y N 7
A1AMD C5 N2 DOUB Y N 8
A1AMD N2 C6 SING Y N 9
A1AMD C6 N3 SING Y N 10
A1AMD N3 C7 SING Y N 11
A1AMD C7 C8 SING N N 12
A1AMD C8 C9 SING Y N 13
A1AMD C9 N4 DOUB Y N 14
A1AMD N4 N5 SING Y N 15
A1AMD C10 N5 SING N N 16
A1AMD N5 C11 SING Y N 17
A1AMD C8 C11 DOUB Y N 18
A1AMD C11 C12 SING N N 19
A1AMD C12 N6 TRIP N N 20
A1AMD C13 C7 DOUB Y N 21
A1AMD C14 C13 SING Y N 22
A1AMD C4 C14 SING Y N 23
A1AMD C6 C14 DOUB Y N 24
A1AMD C15 C3 SING N N 25
A1AMD C15 C16 DOUB Y N 26
A1AMD C16 C17 SING Y N 27
A1AMD C17 C18 DOUB Y N 28
A1AMD C18 C19 SING Y N 29
A1AMD C19 N7 DOUB Y N 30
A1AMD N7 C15 SING Y N 31
A1AMD O C19 SING N N 32
A1AMD C20 O SING N N 33
A1AMD C21 C20 SING N N 34
A1AMD O1 C21 SING N N 35
A1AMD C18 O1 SING N N 36
A1AMD N3 H1 SING N N 37
A1AMD C5 H10 SING N N 38
A1AMD C10 H13 SING N N 39
A1AMD C10 H14 SING N N 40
A1AMD C10 H12 SING N N 41
A1AMD C13 H15 SING N N 42
A1AMD C17 H17 SING N N 43
A1AMD C20 H18 SING N N 44
A1AMD C20 H19 SING N N 45
A1AMD C21 H20 SING N N 46
A1AMD C21 H21 SING N N 47
A1AMD C9 H11 SING N N 48
A1AMD N H9 SING N N 49
A1AMD C3 H SING N N 50
A1AMD C1 H5 SING N N 51
A1AMD C2 H7 SING N N 52
A1AMD C2 H6 SING N N 53
A1AMD C2 H8 SING N N 54
A1AMD C H3 SING N N 55
A1AMD C H4 SING N N 56
A1AMD C H2 SING N N 57
A1AMD C16 H16 SING N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AMD SMILES ACDLabs 12.01 "N#Cc1n(C)ncc1c1cc2c([NH]1)ncnc2NC(c1ccc2OCCOc2n1)C(C)C"
A1AMD InChI InChI 1.06 "InChI=1S/C22H22N8O2/c1-12(2)19(15-4-5-18-22(28-15)32-7-6-31-18)29-21-13-8-16(27-20(13)24-11-25-21)14-10-26-30(3)17(14)9-23/h4-5,8,10-12,19H,6-7H2,1-3H3,(H2,24,25,27,29)/t19-/m0/s1"
A1AMD InChIKey InChI 1.06 TVKAXNHJIVHZSG-IBGZPJMESA-N
A1AMD SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2[nH]c(cc12)c3cnn(C)c3C#N)c4ccc5OCCOc5n4"
A1AMD SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2[nH]c(cc12)c3cnn(C)c3C#N)c4ccc5OCCOc5n4"
A1AMD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(n1)OCCO2)Nc3c4cc([nH]c4ncn3)c5cnn(c5C#N)C"
A1AMD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(n1)OCCO2)Nc3c4cc([nH]c4ncn3)c5cnn(c5C#N)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AMD "SYSTEMATIC NAME" ACDLabs 12.01 "(4M)-4-(4-{[(1R)-1-(2,3-dihydro[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1-methyl-1H-pyrazole-5-carbonitrile"
A1AMD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[4-[[(1~{S})-1-(2,3-dihydro-[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methyl-propyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-6-yl]-2-methyl-pyrazole-3-carbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AMD 'Create component' 2024-04-11 RCSB
A1AMD 'Initial release' 2024-05-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A1AMD N1 N 8.650 -4.138 1
A1AMD N3 N 4.946 -1.638 2
A1AMD C4 C 8.650 -2.639 3
A1AMD C5 C 7.351 -4.888 4
A1AMD C6 C 6.051 -2.639 5
A1AMD C7 C 5.554 -0.276 6
A1AMD C8 C 4.804 1.023 7
A1AMD C10 C 4.456 4.888 8
A1AMD C13 C 7.037 -0.431 9
A1AMD C15 C 12.547 -1.889 10
A1AMD C17 C 13.846 0.361 11
A1AMD C20 C 17.845 -1.920 12
A1AMD C21 C 17.845 -0.357 13
A1AMD N6 N 8.348 3.017 14
A1AMD C12 C 6.881 2.705 15
A1AMD C11 C 5.414 2.393 16
A1AMD N5 N 4.299 3.397 17
A1AMD N4 N 3.000 2.647 18
A1AMD C9 C 3.312 1.180 19
A1AMD C14 C 7.351 -1.889 20
A1AMD N2 N 6.051 -4.138 21
A1AMD N N 9.949 -1.889 22
A1AMD C3 C 11.248 -2.639 23
A1AMD C1 C 11.248 -4.138 24
A1AMD C2 C 9.949 -4.888 25
A1AMD C C 12.547 -4.888 26
A1AMD N7 N 13.846 -2.639 27
A1AMD C19 C 15.145 -1.889 28
A1AMD O O 16.486 -2.691 29
A1AMD O1 O 16.486 0.413 30
A1AMD C18 C 15.145 -0.389 31
A1AMD C16 C 12.547 -0.389 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A1AMD C C1 SINGLE NONE 1
A1AMD C2 C1 SINGLE NONE 2
A1AMD C1 C3 SINGLE NONE 3
A1AMD C3 N SINGLE BEGINDASH 4
A1AMD N C4 SINGLE NONE 5
A1AMD C4 N1 DOUBLE NONE 6
A1AMD N1 C5 SINGLE NONE 7
A1AMD C5 N2 DOUBLE NONE 8
A1AMD N2 C6 SINGLE NONE 9
A1AMD C6 N3 SINGLE NONE 10
A1AMD N3 C7 SINGLE NONE 11
A1AMD C7 C8 SINGLE NONE 12
A1AMD C8 C9 SINGLE NONE 13
A1AMD C9 N4 DOUBLE NONE 14
A1AMD N4 N5 SINGLE NONE 15
A1AMD C10 N5 SINGLE NONE 16
A1AMD N5 C11 SINGLE NONE 17
A1AMD C8 C11 DOUBLE NONE 18
A1AMD C11 C12 SINGLE NONE 19
A1AMD C12 N6 TRIPLE NONE 20
A1AMD C13 C7 DOUBLE NONE 21
A1AMD C14 C13 SINGLE NONE 22
A1AMD C4 C14 SINGLE NONE 23
A1AMD C6 C14 DOUBLE NONE 24
A1AMD C15 C3 SINGLE NONE 25
A1AMD C15 C16 SINGLE NONE 26
A1AMD C16 C17 DOUBLE NONE 27
A1AMD C17 C18 SINGLE NONE 28
A1AMD C18 C19 DOUBLE NONE 29
A1AMD C19 N7 SINGLE NONE 30
A1AMD N7 C15 DOUBLE NONE 31
A1AMD O C19 SINGLE NONE 32
A1AMD C20 O SINGLE NONE 33
A1AMD C21 C20 SINGLE NONE 34
A1AMD O1 C21 SINGLE NONE 35
A1AMD C18 O1 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A1AMD MurckoScaffold S1 scaffold 'c1nc(NCc2ccc3c(n2)OCCO3)c2cc(-c3cn[nH]c3)[nH]c2n1' InChI=1S/C17H15N7O2/c1-2-14-17(26-4-3-25-14)23-11(1)8-18-15-12-5-13(10-6-21-22-7-10)24-16(12)20-9-19-15/h1-2,5-7,9H,3-4,8H2,(H,21,22)(H2,18,19,20,24) ZQCRNDWGWZSKRT-UHFFFAOYSA-N
A1AMD pyrazole F1 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
A1AMD pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
A1AMD pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
A1AMD pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
A1AMD Z1603775714 F5 fragment CNCc1cccc(OC)n1 InChI=1S/C8H12N2O/c1-9-6-7-4-3-5-8(10-7)11-2/h3-5,9H,6H2,1-2H3 ZCDSYDMWOVSOBD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A1AMD N1 S1 1
A1AMD N3 S1 1
A1AMD C4 S1 1
A1AMD C5 S1 1
A1AMD C6 S1 1
A1AMD C7 S1 1
A1AMD C8 S1 1
A1AMD C13 S1 1
A1AMD C15 S1 1
A1AMD C17 S1 1
A1AMD C20 S1 1
A1AMD C21 S1 1
A1AMD C11 S1 1
A1AMD N5 S1 1
A1AMD N4 S1 1
A1AMD C9 S1 1
A1AMD C14 S1 1
A1AMD N2 S1 1
A1AMD N S1 1
A1AMD C3 S1 1
A1AMD N7 S1 1
A1AMD C19 S1 1
A1AMD O S1 1
A1AMD O1 S1 1
A1AMD C18 S1 1
A1AMD C16 S1 1
A1AMD C11 F1 1
A1AMD C8 F1 1
A1AMD C9 F1 1
A1AMD N4 F1 1
A1AMD N5 F1 1
A1AMD C15 F2 1
A1AMD C16 F2 1
A1AMD C17 F2 1
A1AMD C18 F2 1
A1AMD C19 F2 1
A1AMD N7 F2 1
A1AMD C14 F3 1
A1AMD C4 F3 1
A1AMD N1 F3 1
A1AMD C5 F3 1
A1AMD N2 F3 1
A1AMD C6 F3 1
A1AMD C6 F4 1
A1AMD C14 F4 1
A1AMD C13 F4 1
A1AMD C7 F4 1
A1AMD N3 F4 1
A1AMD C4 F5 1
A1AMD N F5 1
A1AMD C3 F5 1
A1AMD C15 F5 1
A1AMD C16 F5 1
A1AMD C17 F5 1
A1AMD C18 F5 1
A1AMD C19 F5 1
A1AMD O F5 1
A1AMD C20 F5 1
A1AMD N7 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A1AMD
_pdbe_chem_comp_rdkit_properties.exactmw 430.187
_pdbe_chem_comp_rdkit_properties.amw 430.472
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.318
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 214.811
_pdbe_chem_comp_rdkit_properties.tpsa 126.560
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.982
_pdbe_chem_comp_rdkit_properties.CrippenMR 111.130
_pdbe_chem_comp_rdkit_properties.chi0v 15.394
_pdbe_chem_comp_rdkit_properties.chi1v 8.397
_pdbe_chem_comp_rdkit_properties.chi2v 3.997
_pdbe_chem_comp_rdkit_properties.chi3v 3.997
_pdbe_chem_comp_rdkit_properties.chi4v 2.627
_pdbe_chem_comp_rdkit_properties.chi0n 37.394
_pdbe_chem_comp_rdkit_properties.chi1n 19.291
_pdbe_chem_comp_rdkit_properties.chi2n 3.997
_pdbe_chem_comp_rdkit_properties.chi3n 3.997
_pdbe_chem_comp_rdkit_properties.chi4n 2.627
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.130
_pdbe_chem_comp_rdkit_properties.kappa1 6.934
_pdbe_chem_comp_rdkit_properties.kappa2 7.848
_pdbe_chem_comp_rdkit_properties.kappa3 3.374
_pdbe_chem_comp_rdkit_properties.Phi 1.700
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A1AMD N1 -1.165 -0.050 1.096 ETKDGv3 1
A1AMD N3 2.602 1.119 2.336 ETKDGv3 2
A1AMD C4 -0.100 -0.433 0.442 ETKDGv3 3
A1AMD C5 -1.075 0.804 2.262 ETKDGv3 4
A1AMD C6 1.265 0.812 1.984 ETKDGv3 5
A1AMD C7 3.370 0.416 1.351 ETKDGv3 6
A1AMD C8 4.847 0.381 1.300 ETKDGv3 7
A1AMD C10 8.272 1.194 2.185 ETKDGv3 8
A1AMD C13 2.572 -0.239 0.500 ETKDGv3 9
A1AMD C15 -2.316 -0.667 -1.751 ETKDGv3 10
A1AMD C17 -2.801 0.972 -3.492 ETKDGv3 11
A1AMD C20 -6.001 2.407 -1.026 ETKDGv3 12
A1AMD C21 -5.363 3.378 -2.025 ETKDGv3 13
A1AMD N6 5.185 3.273 3.358 ETKDGv3 14
A1AMD C12 5.420 2.346 2.706 ETKDGv3 15
A1AMD C11 5.719 1.194 1.893 ETKDGv3 16
A1AMD N5 7.034 0.794 1.531 ETKDGv3 17
A1AMD N4 6.921 -0.338 0.719 ETKDGv3 18
A1AMD C9 5.663 -0.586 0.552 ETKDGv3 19
A1AMD C14 1.206 0.036 0.928 ETKDGv3 20
A1AMD N2 0.088 1.216 2.692 ETKDGv3 21
A1AMD N -0.197 -1.285 -0.713 ETKDGv3 22
A1AMD C3 -1.452 -1.811 -1.268 ETKDGv3 23
A1AMD C1 -2.173 -2.769 -0.273 ETKDGv3 24
A1AMD C2 -1.212 -3.845 0.256 ETKDGv3 25
A1AMD C -3.381 -3.450 -0.937 ETKDGv3 26
A1AMD N7 -3.224 -0.141 -0.974 ETKDGv3 27
A1AMD C19 -4.026 0.976 -1.390 ETKDGv3 28
A1AMD O -5.019 1.486 -0.546 ETKDGv3 29
A1AMD O1 -4.575 2.655 -2.974 ETKDGv3 30
A1AMD C18 -3.821 1.539 -2.591 ETKDGv3 31
A1AMD C16 -2.077 -0.079 -3.092 ETKDGv3 32
A1AMD H1 2.926 1.589 3.209 ETKDGv3 33
A1AMD H10 -1.976 1.099 2.782 ETKDGv3 34
A1AMD H13 8.271 2.290 2.362 ETKDGv3 35
A1AMD H14 8.368 0.663 3.155 ETKDGv3 36
A1AMD H12 9.138 0.938 1.540 ETKDGv3 37
A1AMD H15 2.884 -0.858 -0.331 ETKDGv3 38
A1AMD H17 -2.633 1.412 -4.467 ETKDGv3 39
A1AMD H18 -6.810 1.839 -1.534 ETKDGv3 40
A1AMD H19 -6.439 2.964 -0.171 ETKDGv3 41
A1AMD H20 -6.148 3.957 -2.555 ETKDGv3 42
A1AMD H21 -4.706 4.087 -1.476 ETKDGv3 43
A1AMD H11 5.294 -1.414 -0.038 ETKDGv3 44
A1AMD H9 0.687 -1.542 -1.208 ETKDGv3 45
A1AMD H -1.190 -2.422 -2.163 ETKDGv3 46
A1AMD H5 -2.547 -2.194 0.601 ETKDGv3 47
A1AMD H7 -0.388 -3.382 0.839 ETKDGv3 48
A1AMD H6 -1.749 -4.542 0.935 ETKDGv3 49
A1AMD H8 -0.776 -4.428 -0.583 ETKDGv3 50
A1AMD H3 -4.126 -2.698 -1.270 ETKDGv3 51
A1AMD H4 -3.887 -4.125 -0.214 ETKDGv3 52
A1AMD H2 -3.060 -4.048 -1.817 ETKDGv3 53
A1AMD H16 -1.318 -0.492 -3.745 ETKDGv3 54
#