data_A1H0L
#
_chem_comp.id A1H0L
_chem_comp.name "2-(1-benzothiophen-3-yl)ethanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H8 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-12-15
_chem_comp.pdbx_modified_date 2024-06-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 192.234
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1H0L
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8RF3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1H0L C1 C1 C 0 1 N N N N N N 18.410 -13.128 0.519 -2.739 0.279 -0.198 C1 A1H0L 1
A1H0L C10 C2 C 0 1 Y N N N N N 14.530 -13.432 5.368 2.858 0.359 -0.362 C10 A1H0L 2
A1H0L C2 C3 C 0 1 N N N N N N 18.278 -13.458 2.002 -1.928 -0.124 1.007 C2 A1H0L 3
A1H0L C3 C4 C 0 1 Y N N N N N 16.915 -13.753 2.532 -0.568 -0.597 0.561 C3 A1H0L 4
A1H0L C4 C5 C 0 1 Y N N N N N 15.968 -14.504 1.932 -0.291 -1.870 0.358 C4 A1H0L 5
A1H0L C5 C6 C 0 1 Y N N N N N 15.173 -13.789 4.189 1.691 -0.361 -0.085 C5 A1H0L 6
A1H0L C6 C7 C 0 1 Y N N N N N 16.402 -13.233 3.826 0.538 0.315 0.320 C6 A1H0L 7
A1H0L C7 C8 C 0 1 Y N N N N N 17.006 -12.297 4.664 0.581 1.721 0.440 C7 A1H0L 8
A1H0L C8 C9 C 0 1 Y N N N N N 16.364 -11.938 5.838 1.727 2.403 0.166 C8 A1H0L 9
A1H0L C9 C10 C 0 1 Y N N N N N 15.141 -12.497 6.186 2.871 1.727 -0.236 C9 A1H0L 10
A1H0L O1 O1 O 0 1 N N N N N N 17.359 -12.962 -0.127 -2.263 0.190 -1.304 O1 A1H0L 11
A1H0L O2 O2 O 0 1 N N N N N N 19.570 -13.056 0.074 -3.994 0.730 -0.041 O2 A1H0L 12
A1H0L S1 S1 S 0 1 Y N N N N N 14.655 -14.918 2.981 1.371 -2.090 -0.154 S1 A1H0L 13
A1H0L H1 H1 H 0 1 N N N N N N 13.581 -13.871 5.638 3.752 -0.162 -0.670 H1 A1H0L 14
A1H0L H2 H2 H 0 1 N N N N N N 18.904 -14.341 2.198 -1.814 0.733 1.671 H2 A1H0L 15
A1H0L H3 H3 H 0 1 N N N N N N 18.670 -12.598 2.565 -2.437 -0.929 1.536 H3 A1H0L 16
A1H0L H5 H5 H 0 1 N N N N N N 16.024 -14.816 0.900 -0.999 -2.675 0.491 H5 A1H0L 17
A1H0L H7 H7 H 0 1 N N N N N N 17.958 -11.859 4.403 -0.302 2.260 0.752 H7 A1H0L 18
A1H0L H8 H8 H 0 1 N N N N N N 16.822 -11.212 6.493 1.745 3.478 0.262 H8 A1H0L 19
A1H0L H9 H9 H 0 1 N N N N N N 14.661 -12.199 7.106 3.776 2.279 -0.447 H9 A1H0L 20
A1H0L H10 H10 H 0 1 N N N N N N 19.542 -12.851 -0.853 -4.475 0.976 -0.843 H10 A1H0L 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1H0L O1 C1 DOUB N N 1
A1H0L O2 C1 SING N N 2
A1H0L C1 C2 SING N N 3
A1H0L C4 C3 DOUB Y N 4
A1H0L C4 S1 SING Y N 5
A1H0L C2 C3 SING N N 6
A1H0L C3 C6 SING Y N 7
A1H0L S1 C5 SING Y N 8
A1H0L C6 C5 DOUB Y N 9
A1H0L C6 C7 SING Y N 10
A1H0L C5 C10 SING Y N 11
A1H0L C7 C8 DOUB Y N 12
A1H0L C10 C9 DOUB Y N 13
A1H0L C8 C9 SING Y N 14
A1H0L C10 H1 SING N N 15
A1H0L C2 H2 SING N N 16
A1H0L C2 H3 SING N N 17
A1H0L C4 H5 SING N N 18
A1H0L C7 H7 SING N N 19
A1H0L C8 H8 SING N N 20
A1H0L C9 H9 SING N N 21
A1H0L O2 H10 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1H0L InChI InChI 1.06 "InChI=1S/C10H8O2S/c11-10(12)5-7-6-13-9-4-2-1-3-8(7)9/h1-4,6H,5H2,(H,11,12)"
A1H0L InChIKey InChI 1.06 VFZQJKXVHYZXMM-UHFFFAOYSA-N
A1H0L SMILES_CANONICAL CACTVS 3.385 "OC(=O)Cc1csc2ccccc12"
A1H0L SMILES CACTVS 3.385 "OC(=O)Cc1csc2ccccc12"
A1H0L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cs2)CC(=O)O"
A1H0L SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cs2)CC(=O)O"
#
_pdbx_chem_comp_identifier.comp_id A1H0L
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-(1-benzothiophen-3-yl)ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1H0L 'Create component' 2023-12-15 PDBE
A1H0L 'Initial release' 2024-06-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A1H0L C1 C 8.951 1.412 1
A1H0L C10 C 4.299 -3.030 2
A1H0L C2 C 7.483 1.103 3
A1H0L C3 C 7.018 -0.323 4
A1H0L C4 C 7.893 -1.530 5
A1H0L C5 C 5.598 -2.280 6
A1H0L C6 C 5.598 -0.780 7
A1H0L C7 C 4.299 -0.030 8
A1H0L C8 C 3.000 -0.780 9
A1H0L C9 C 3.000 -2.280 10
A1H0L O1 O 9.417 2.838 11
A1H0L O2 O 9.953 0.296 12
A1H0L S1 S 7.018 -2.737 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A1H0L O1 C1 DOUBLE NONE 1
A1H0L O2 C1 SINGLE NONE 2
A1H0L C1 C2 SINGLE NONE 3
A1H0L C4 C3 DOUBLE NONE 4
A1H0L C4 S1 SINGLE NONE 5
A1H0L C2 C3 SINGLE NONE 6
A1H0L C3 C6 SINGLE NONE 7
A1H0L S1 C5 SINGLE NONE 8
A1H0L C6 C5 SINGLE NONE 9
A1H0L C6 C7 DOUBLE NONE 10
A1H0L C5 C10 DOUBLE NONE 11
A1H0L C7 C8 SINGLE NONE 12
A1H0L C10 C9 SINGLE NONE 13
A1H0L C8 C9 DOUBLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A1H0L MurckoScaffold S1 scaffold c1ccc2sccc2c1 InChI=1S/C8H6S/c1-2-4-8-7(3-1)5-6-9-8/h1-6H FCEHBMOGCRZNNI-UHFFFAOYSA-N
A1H0L benzothiophen F1 fragment c1ccc2sccc2c1 InChI=1S/C8H6S/c1-2-4-8-7(3-1)5-6-9-8/h1-6H FCEHBMOGCRZNNI-UHFFFAOYSA-N
A1H0L phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
A1H0L thiophen F3 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A1H0L C10 S1 1
A1H0L C3 S1 1
A1H0L C4 S1 1
A1H0L C5 S1 1
A1H0L C6 S1 1
A1H0L C7 S1 1
A1H0L C8 S1 1
A1H0L C9 S1 1
A1H0L S1 S1 1
A1H0L C5 F1 1
A1H0L C6 F1 1
A1H0L C3 F1 1
A1H0L C4 F1 1
A1H0L S1 F1 1
A1H0L C7 F1 1
A1H0L C8 F1 1
A1H0L C9 F1 1
A1H0L C10 F1 1
A1H0L C10 F2 1
A1H0L C5 F2 1
A1H0L C6 F2 1
A1H0L C7 F2 1
A1H0L C8 F2 1
A1H0L C9 F2 1
A1H0L C4 F3 1
A1H0L C3 F3 1
A1H0L C6 F3 1
A1H0L C5 F3 1
A1H0L S1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A1H0L
_pdbe_chem_comp_rdkit_properties.exactmw 192.025
_pdbe_chem_comp_rdkit_properties.amw 192.239
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 90.766
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.045
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.693
_pdbe_chem_comp_rdkit_properties.chi0v 7.041
_pdbe_chem_comp_rdkit_properties.chi1v 4.133
_pdbe_chem_comp_rdkit_properties.chi2v 2.202
_pdbe_chem_comp_rdkit_properties.chi3v 2.202
_pdbe_chem_comp_rdkit_properties.chi4v 1.611
_pdbe_chem_comp_rdkit_properties.chi0n 14.225
_pdbe_chem_comp_rdkit_properties.chi1n 7.225
_pdbe_chem_comp_rdkit_properties.chi2n 1.385
_pdbe_chem_comp_rdkit_properties.chi3n 1.385
_pdbe_chem_comp_rdkit_properties.chi4n 0.897
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.350
_pdbe_chem_comp_rdkit_properties.kappa1 3.099
_pdbe_chem_comp_rdkit_properties.kappa2 3.184
_pdbe_chem_comp_rdkit_properties.kappa3 1.553
_pdbe_chem_comp_rdkit_properties.Phi 0.759
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
A1H0L UniChem ChEMBL CHEMBL2138134
A1H0L UniChem ChEBI 194621
A1H0L UniChem ZINC ZINC000000101156
A1H0L UniChem eMolecules 724459
A1H0L UniChem PubChem 70799
A1H0L UniChem Mcule MCULE-5976245234
A1H0L UniChem ACTor 1131-09-5
A1H0L UniChem ChemicalBook CB8357481
A1H0L UniChem 'EPA CompTox Dashboard' DTXSID70150283
A1H0L UniChem SureChEMBL SCHEMBL1233284
A1H0L UniChem 'PubChem TPHARMA' 16411045
A1H0L UniChem Nikkaji J54.175C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A1H0L C1 2.301 -1.410 0.542 ETKDGv3 1
A1H0L C10 -2.143 2.002 -0.037 ETKDGv3 2
A1H0L C2 1.533 -1.408 -0.741 ETKDGv3 3
A1H0L C3 0.788 -0.111 -0.894 ETKDGv3 4
A1H0L C4 1.288 0.924 -1.589 ETKDGv3 5
A1H0L C5 -0.993 1.532 -0.522 ETKDGv3 6
A1H0L C6 -0.519 0.178 -0.246 ETKDGv3 7
A1H0L C7 -1.248 -0.643 0.525 ETKDGv3 8
A1H0L C8 -2.536 -0.149 1.079 ETKDGv3 9
A1H0L C9 -2.959 1.102 0.813 ETKDGv3 10
A1H0L O1 1.820 -1.963 1.567 ETKDGv3 11
A1H0L O2 3.532 -0.766 0.612 ETKDGv3 12
A1H0L S1 0.198 2.349 -1.542 ETKDGv3 13
A1H0L H1 -2.469 3.010 -0.254 ETKDGv3 14
A1H0L H2 2.239 -1.550 -1.587 ETKDGv3 15
A1H0L H3 0.822 -2.260 -0.764 ETKDGv3 16
A1H0L H5 2.238 0.905 -2.107 ETKDGv3 17
A1H0L H7 -0.918 -1.648 0.748 ETKDGv3 18
A1H0L H8 -3.135 -0.802 1.701 ETKDGv3 19
A1H0L H9 -3.898 1.454 1.220 ETKDGv3 20
A1H0L H10 4.059 -0.745 1.477 ETKDGv3 21
#