data_A1H2A
#
_chem_comp.id A1H2A
_chem_comp.name
"(2~{S})-2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-2-yl]-2-oxidanyl-butanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H25 N4 O10 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Ketobutyryl-thiamine diphosphate"
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2024-01-16
_chem_comp.pdbx_modified_date 2024-06-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 527.403
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1H2A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8RPH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1H2A O2 O1 O 0 1 N N N N N N 45.364 4.407 69.211 -4.326 -0.544 1.541 O2 A1H2A 1
A1H2A C9 C1 C 0 1 N N N N N N 47.802 7.085 68.245 -5.400 -3.228 2.022 C9 A1H2A 2
A1H2A C8 C2 C 0 1 N N N N N N 47.072 6.009 69.030 -4.007 -2.939 1.460 C8 A1H2A 3
A1H2A C7 C3 C 0 1 N N N N N N 41.940 10.631 69.003 1.891 -0.498 -0.263 C7 A1H2A 4
A1H2A C6 C4 C 0 1 N N N N N N 42.898 10.081 67.983 1.087 -1.469 -1.130 C6 A1H2A 5
A1H2A N3 N1 N 1 1 Y N N N N N 43.337 6.410 68.801 -2.473 -0.570 -0.943 N3 A1H2A 6
A1H2A S1 S1 S 0 1 Y N N N N N 44.925 8.151 67.965 -1.262 -2.240 0.417 S1 A1H2A 7
A1H2A C5 C5 C 0 1 Y N N N N N 43.319 8.658 68.245 -0.380 -1.333 -0.809 C5 A1H2A 8
A1H2A C4 C6 C 0 1 Y N N N N N 42.589 7.604 68.688 -1.240 -0.502 -1.404 C4 A1H2A 9
A1H2A C3 C7 C 0 1 N N N N N N 45.962 4.989 66.940 -5.108 -1.719 -0.397 C3 A1H2A 10
A1H2A C1 C8 C 0 1 N N S N N N 45.748 5.502 68.400 -4.039 -1.634 0.662 C1 A1H2A 11
A1H2A C2 C9 C 0 1 Y N N N N N 44.665 6.542 68.436 -2.700 -1.412 0.007 C2 A1H2A 12
A1H2A "C2'" C10 C 0 1 Y N N N N N 42.302 4.644 73.425 -4.032 3.633 0.973 "C2'" A1H2A 13
A1H2A "C4'" C11 C 0 1 Y N N N N N 43.681 5.084 71.631 -2.976 2.650 -0.820 "C4'" A1H2A 14
A1H2A "C5'" C12 C 0 1 Y N N N N N 42.593 4.992 70.736 -3.716 1.486 -0.599 "C5'" A1H2A 15
A1H2A "C6'" C13 C 0 1 Y N N N N N 41.371 4.707 71.320 -4.619 1.471 0.446 "C6'" A1H2A 16
A1H2A "C7'" C14 C 0 1 N N N N N N 42.709 5.169 69.261 -3.539 0.279 -1.483 "C7'" A1H2A 17
A1H2A CM2 C15 C 0 1 N N N N N N 42.143 4.456 74.897 -4.215 4.837 1.861 CM2 A1H2A 18
A1H2A CM4 C16 C 0 1 N N N N N N 41.139 7.619 69.041 -0.835 0.437 -2.511 CM4 A1H2A 19
A1H2A "N1'" N2 N 0 1 Y N N N N N 41.204 4.534 72.644 -4.749 2.552 1.203 "N1'" A1H2A 20
A1H2A "N3'" N3 N 0 1 Y N N N N N 43.512 4.908 72.962 -3.163 3.693 -0.016 "N3'" A1H2A 21
A1H2A "N4'" N4 N 0 1 N N N N N N 44.928 5.350 71.225 -2.062 2.716 -1.858 "N4'" A1H2A 22
A1H2A O10 O2 O 0 1 N N N N N N 47.072 5.178 66.388 -5.045 -2.674 -1.339 O10 A1H2A 23
A1H2A O1A O3 O 0 1 N N N N N N 43.818 13.413 70.867 4.313 0.078 1.627 O1A A1H2A 24
A1H2A O1B O4 O 0 1 N N N N N N 42.492 15.145 67.235 7.344 -0.410 1.714 O1B A1H2A 25
A1H2A O2A O5 O 0 1 N N N N N N 41.520 13.655 69.786 4.232 1.799 -0.218 O2A A1H2A 26
A1H2A O2B O6 O 0 1 N N N N N N 44.836 15.316 68.154 8.337 -1.155 -0.485 O2B A1H2A 27
A1H2A O3A O7 O 0 1 N N N N N N 43.514 13.159 68.365 5.872 -0.252 -0.331 O3A A1H2A 28
A1H2A O3B O8 O 0 1 N N N N N N 44.369 13.874 66.137 7.898 1.386 0.029 O3B A1H2A 29
A1H2A O7 O9 O 0 1 N N N N N N 42.680 11.422 69.958 3.281 -0.627 -0.567 O7 A1H2A 30
A1H2A O9 O10 O 0 1 N N N N N N 44.989 4.419 66.389 -6.022 -0.928 -0.399 O9 A1H2A 31
A1H2A PA P1 P 0 1 N N N N N N 42.853 13.001 69.816 4.422 0.246 0.160 PA A1H2A 32
A1H2A PB P2 P 0 1 N N N N N N 43.825 14.447 67.429 7.362 -0.114 0.263 PB A1H2A 33
A1H2A HO2 H1 H 0 1 N N N N N N 44.984 3.727 68.667 -3.678 -0.430 2.249 HO2 A1H2A 34
A1H2A H92 H2 H 0 1 N N N N N N 48.721 7.369 68.779 -5.706 -2.410 2.674 H92 A1H2A 35
A1H2A H91 H3 H 0 1 N N N N N N 48.061 6.699 67.248 -6.111 -3.322 1.201 H91 A1H2A 36
A1H2A H9 H4 H 0 1 N N N N N N 47.152 7.966 68.139 -5.377 -4.157 2.591 H9 A1H2A 37
A1H2A H8 H5 H 0 1 N N N N N N 46.839 6.415 70.025 -3.296 -2.844 2.282 H8 A1H2A 38
A1H2A H81 H6 H 0 1 N N N N N N 47.749 5.148 69.134 -3.701 -3.756 0.808 H81 A1H2A 39
A1H2A H72 H7 H 0 1 N N N N N N 41.190 11.261 68.503 1.568 0.523 -0.466 H72 A1H2A 40
A1H2A H71 H8 H 0 1 N N N N N N 41.436 9.802 69.521 1.726 -0.728 0.790 H71 A1H2A 41
A1H2A H61 H9 H 0 1 N N N N N N 43.798 10.713 67.977 1.252 -1.238 -2.182 H61 A1H2A 42
A1H2A H62 H10 H 0 1 N N N N N N 42.414 10.123 66.996 1.410 -2.490 -0.926 H62 A1H2A 43
A1H2A "H6'" H11 H 0 1 N N N N N N 40.506 4.619 70.679 -5.208 0.589 0.646 "H6'" A1H2A 44
A1H2A "H7'1" H12 H 0 0 N N N N N N 43.301 4.329 68.869 -3.272 0.601 -2.489 "H7'1" A1H2A 45
A1H2A "H7'2" H13 H 0 0 N N N N N N 41.694 5.131 68.839 -4.470 -0.286 -1.518 "H7'2" A1H2A 46
A1H2A HM21 H14 H 0 0 N N N N N N 41.089 4.244 75.128 -4.996 5.476 1.449 HM21 A1H2A 47
A1H2A HM23 H15 H 0 0 N N N N N N 42.768 3.613 75.229 -4.502 4.510 2.860 HM23 A1H2A 48
A1H2A HM22 H16 H 0 0 N N N N N N 42.456 5.372 75.419 -3.280 5.394 1.915 HM22 A1H2A 49
A1H2A HM42 H17 H 0 0 N N N N N N 41.023 7.867 70.106 -0.582 1.409 -2.089 HM42 A1H2A 50
A1H2A HM41 H18 H 0 0 N N N N N N 40.621 8.374 68.431 0.032 0.031 -3.033 HM41 A1H2A 51
A1H2A HM43 H19 H 0 0 N N N N N N 40.704 6.628 68.846 -1.661 0.549 -3.214 HM43 A1H2A 52
A1H2A HN42 H20 H 0 0 N N N N N N 45.539 5.372 72.016 -2.197 2.184 -2.658 HN42 A1H2A 53
A1H2A HN41 H21 H 0 0 N N N N N N 45.230 4.639 70.590 -1.286 3.294 -1.785 HN41 A1H2A 54
A1H2A H1 H22 H 0 1 N N N N N N 47.052 4.826 65.506 -5.753 -2.689 -1.997 H1 A1H2A 55
A1H2A H2 H23 H 0 1 N N N N N N 41.462 14.290 70.490 4.291 1.984 -1.165 H2 A1H2A 56
A1H2A H3 H24 H 0 1 N N N N N N 44.443 16.156 68.359 9.253 -1.127 -0.176 H3 A1H2A 57
A1H2A H4 H25 H 0 1 N N N N N N 43.764 14.060 65.428 7.936 1.649 -0.901 H4 A1H2A 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1H2A "N1'" "C2'" DOUB Y N 1
A1H2A "N1'" "C6'" SING Y N 2
A1H2A "C2'" CM2 SING N N 3
A1H2A "C2'" "N3'" SING Y N 4
A1H2A "N3'" "C4'" DOUB Y N 5
A1H2A "C4'" "N4'" SING N N 6
A1H2A "C4'" "C5'" SING Y N 7
A1H2A "C5'" "C6'" DOUB Y N 8
A1H2A "C5'" "C7'" SING N N 9
A1H2A "C7'" N3 SING N N 10
A1H2A N3 C2 DOUB Y N 11
A1H2A N3 C4 SING Y N 12
A1H2A C2 S1 SING Y N 13
A1H2A C2 C1 SING N N 14
A1H2A S1 C5 SING Y N 15
A1H2A C5 C4 DOUB Y N 16
A1H2A C5 C6 SING N N 17
A1H2A C4 CM4 SING N N 18
A1H2A C6 C7 SING N N 19
A1H2A C7 O7 SING N N 20
A1H2A O7 PA SING N N 21
A1H2A PA O1A DOUB N N 22
A1H2A PA O2A SING N N 23
A1H2A PA O3A SING N N 24
A1H2A O3A PB SING N N 25
A1H2A PB O1B DOUB N N 26
A1H2A PB O2B SING N N 27
A1H2A PB O3B SING N N 28
A1H2A C1 O2 SING N N 29
A1H2A C1 C3 SING N N 30
A1H2A C1 C8 SING N N 31
A1H2A C3 O9 DOUB N N 32
A1H2A C3 O10 SING N N 33
A1H2A C8 C9 SING N N 34
A1H2A O2 HO2 SING N N 35
A1H2A C9 H92 SING N N 36
A1H2A C9 H91 SING N N 37
A1H2A C9 H9 SING N N 38
A1H2A C8 H8 SING N N 39
A1H2A C8 H81 SING N N 40
A1H2A C7 H72 SING N N 41
A1H2A C7 H71 SING N N 42
A1H2A C6 H61 SING N N 43
A1H2A C6 H62 SING N N 44
A1H2A "C6'" "H6'" SING N N 45
A1H2A "C7'" "H7'1" SING N N 46
A1H2A "C7'" "H7'2" SING N N 47
A1H2A CM2 HM21 SING N N 48
A1H2A CM2 HM23 SING N N 49
A1H2A CM2 HM22 SING N N 50
A1H2A CM4 HM42 SING N N 51
A1H2A CM4 HM41 SING N N 52
A1H2A CM4 HM43 SING N N 53
A1H2A "N4'" HN42 SING N N 54
A1H2A "N4'" HN41 SING N N 55
A1H2A O10 H1 SING N N 56
A1H2A O2A H2 SING N N 57
A1H2A O2B H3 SING N N 58
A1H2A O3B H4 SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1H2A InChI InChI 1.06 "InChI=1S/C16H24N4O10P2S/c1-4-16(23,15(21)22)14-20(8-11-7-18-10(3)19-13(11)17)9(2)12(33-14)5-6-29-32(27,28)30-31(24,25)26/h7,23H,4-6,8H2,1-3H3,(H5-,17,18,19,21,22,24,25,26,27,28)/p+1/t16-/m1/s1"
A1H2A InChIKey InChI 1.06 FMOBPODOIDIUAY-MRXNPFEDSA-O
A1H2A SMILES_CANONICAL CACTVS 3.385 "CC[C@](O)(C(O)=O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N"
A1H2A SMILES CACTVS 3.385 "CC[C](O)(C(O)=O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N"
A1H2A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@](c1[n+](c(c(s1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)(C(=O)O)O"
A1H2A SMILES "OpenEye OEToolkits" 2.0.7 "CCC(c1[n+](c(c(s1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)(C(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id A1H2A
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{S})-2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-3-ium-2-yl]-2-oxidanyl-butanoic acid"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id A1H2A
_pdbx_chem_comp_synonyms.name "Ketobutyryl-thiamine diphosphate"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1H2A 'Create component' 2024-01-16 PDBE
A1H2A 'Initial release' 2024-06-12 RCSB
#
_pdbe_chem_comp_synonyms.comp_id A1H2A
_pdbe_chem_comp_synonyms.name 'Ketobutyryl-thiamine diphosphate'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A1H2A O2 O 5.630 4.010 1
A1H2A C9 C 4.274 2.204 2
A1H2A C8 C 5.741 1.892 3
A1H2A C7 C 12.450 2.072 4
A1H2A C6 C 11.568 0.859 5
A1H2A N3 N 7.702 0.511 6
A1H2A S1 S 9.326 2.315 7
A1H2A C5 C 10.076 1.016 8
A1H2A C4 C 9.073 -0.099 9
A1H2A C3 C 7.748 4.121 10
A1H2A C1 C 6.745 3.007 11
A1H2A C2 C 7.859 2.003 12
A1H2A "C2'" C 6.404 -4.739 13
A1H2A "C4'" C 5.104 -2.489 14
A1H2A "C5'" C 6.404 -1.739 15
A1H2A "C6'" C 7.702 -2.489 16
A1H2A "C7'" C 6.404 -0.239 17
A1H2A CM2 C 6.404 -6.239 18
A1H2A CM4 C 9.385 -1.566 19
A1H2A "N1'" N 7.702 -3.989 20
A1H2A "N3'" N 5.104 -3.989 21
A1H2A "N4'" N 3.805 -1.739 22
A1H2A O10 O 9.216 3.809 23
A1H2A O1A O 16.037 2.247 24
A1H2A O1B O 18.689 4.029 25
A1H2A O2A O 13.610 4.011 26
A1H2A O2B O 17.354 5.678 27
A1H2A O3A O 15.705 4.343 28
A1H2A O3B O 17.040 2.694 29
A1H2A O7 O 13.942 1.916 30
A1H2A O9 O 7.285 5.548 31
A1H2A PA P 14.823 3.129 32
A1H2A PB P 17.197 4.186 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A1H2A "N1'" "C2'" DOUBLE NONE 1
A1H2A "N1'" "C6'" SINGLE NONE 2
A1H2A "C2'" CM2 SINGLE NONE 3
A1H2A "C2'" "N3'" SINGLE NONE 4
A1H2A "N3'" "C4'" DOUBLE NONE 5
A1H2A "C4'" "N4'" SINGLE NONE 6
A1H2A "C4'" "C5'" SINGLE NONE 7
A1H2A "C5'" "C6'" DOUBLE NONE 8
A1H2A "C5'" "C7'" SINGLE NONE 9
A1H2A "C7'" N3 SINGLE NONE 10
A1H2A N3 C2 DOUBLE NONE 11
A1H2A N3 C4 SINGLE NONE 12
A1H2A C2 S1 SINGLE NONE 13
A1H2A C2 C1 SINGLE NONE 14
A1H2A S1 C5 SINGLE NONE 15
A1H2A C5 C4 DOUBLE NONE 16
A1H2A C5 C6 SINGLE NONE 17
A1H2A C4 CM4 SINGLE NONE 18
A1H2A C6 C7 SINGLE NONE 19
A1H2A C7 O7 SINGLE NONE 20
A1H2A O7 PA SINGLE NONE 21
A1H2A PA O1A DOUBLE NONE 22
A1H2A PA O2A SINGLE BEGINWEDGE 23
A1H2A PA O3A SINGLE NONE 24
A1H2A O3A PB SINGLE NONE 25
A1H2A PB O1B DOUBLE NONE 26
A1H2A PB O2B SINGLE NONE 27
A1H2A PB O3B SINGLE NONE 28
A1H2A C1 O2 SINGLE BEGINWEDGE 29
A1H2A C1 C3 SINGLE NONE 30
A1H2A C1 C8 SINGLE NONE 31
A1H2A C3 O9 DOUBLE NONE 32
A1H2A C3 O10 SINGLE NONE 33
A1H2A C8 C9 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A1H2A MurckoScaffold S1 scaffold 'c1ncc(C[n+]2ccsc2)cn1' InChI=1S/C8H8N3S/c1-2-12-7-11(1)5-8-3-9-6-10-4-8/h1-4,6-7H,5H2/q+1 VOZNMBMJVMRVOB-UHFFFAOYSA-N
A1H2A phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
A1H2A pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
A1H2A thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A1H2A N3 S1 1
A1H2A S1 S1 1
A1H2A C5 S1 1
A1H2A C4 S1 1
A1H2A C2 S1 1
A1H2A "C2'" S1 1
A1H2A "C4'" S1 1
A1H2A "C5'" S1 1
A1H2A "C6'" S1 1
A1H2A "C7'" S1 1
A1H2A "N1'" S1 1
A1H2A "N3'" S1 1
A1H2A O2A F1 1
A1H2A PA F1 1
A1H2A O1A F1 1
A1H2A O7 F1 1
A1H2A O3A F1 1
A1H2A O2B F1 2
A1H2A PB F1 2
A1H2A O1B F1 2
A1H2A O3A F1 2
A1H2A O3B F1 2
A1H2A "C5'" F2 1
A1H2A "C4'" F2 1
A1H2A "N3'" F2 1
A1H2A "C2'" F2 1
A1H2A "N1'" F2 1
A1H2A "C6'" F2 1
A1H2A C5 F3 1
A1H2A C4 F3 1
A1H2A N3 F3 1
A1H2A C2 F3 1
A1H2A S1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A1H2A
_pdbe_chem_comp_rdkit_properties.exactmw 527.076
_pdbe_chem_comp_rdkit_properties.amw 527.409
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 227.755
_pdbe_chem_comp_rdkit_properties.tpsa 226.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.130
_pdbe_chem_comp_rdkit_properties.CrippenMR 111.814
_pdbe_chem_comp_rdkit_properties.chi0v 17.779
_pdbe_chem_comp_rdkit_properties.chi1v 11.212
_pdbe_chem_comp_rdkit_properties.chi2v 6.138
_pdbe_chem_comp_rdkit_properties.chi3v 6.138
_pdbe_chem_comp_rdkit_properties.chi4v 4.048
_pdbe_chem_comp_rdkit_properties.chi0n 40.174
_pdbe_chem_comp_rdkit_properties.chi1n 19.410
_pdbe_chem_comp_rdkit_properties.chi2n 3.060
_pdbe_chem_comp_rdkit_properties.chi3n 3.060
_pdbe_chem_comp_rdkit_properties.chi4n 1.797
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.800
_pdbe_chem_comp_rdkit_properties.kappa1 8.697
_pdbe_chem_comp_rdkit_properties.kappa2 10.218
_pdbe_chem_comp_rdkit_properties.kappa3 6.853
_pdbe_chem_comp_rdkit_properties.Phi 2.693
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A1H2A O2 -3.317 0.618 -0.929 ETKDGv3 1
A1H2A C9 -4.008 2.983 -2.501 ETKDGv3 2
A1H2A C8 -2.597 2.645 -2.006 ETKDGv3 3
A1H2A C7 3.441 -0.038 -0.558 ETKDGv3 4
A1H2A C6 2.886 1.346 -0.228 ETKDGv3 5
A1H2A N3 -0.759 0.853 0.835 ETKDGv3 6
A1H2A S1 0.272 1.851 -1.297 ETKDGv3 7
A1H2A C5 1.392 1.299 -0.054 ETKDGv3 8
A1H2A C4 0.695 0.834 0.996 ETKDGv3 9
A1H2A C3 -3.239 2.600 0.390 ETKDGv3 10
A1H2A C1 -2.579 1.793 -0.703 ETKDGv3 11
A1H2A C2 -1.139 1.434 -0.288 ETKDGv3 12
A1H2A "C2'" -4.554 -2.543 0.553 ETKDGv3 13
A1H2A "C4'" -2.254 -1.893 0.605 ETKDGv3 14
A1H2A "C5'" -2.645 -0.703 1.424 ETKDGv3 15
A1H2A "C6'" -3.935 -0.607 1.793 ETKDGv3 16
A1H2A "C7'" -1.661 0.348 1.898 ETKDGv3 17
A1H2A CM2 -5.571 -3.538 0.106 ETKDGv3 18
A1H2A CM4 1.358 0.371 2.274 ETKDGv3 19
A1H2A "N1'" -4.902 -1.558 1.326 ETKDGv3 20
A1H2A "N3'" -3.173 -2.724 0.207 ETKDGv3 21
A1H2A "N4'" -0.894 -2.168 0.268 ETKDGv3 22
A1H2A O10 -4.560 2.344 0.747 ETKDGv3 23
A1H2A O1A 5.018 -1.779 -2.572 ETKDGv3 24
A1H2A O1B 9.093 -1.095 0.605 ETKDGv3 25
A1H2A O2A 4.818 -2.684 -0.133 ETKDGv3 26
A1H2A O2B 6.835 -1.839 1.677 ETKDGv3 27
A1H2A O3A 7.139 -1.490 -1.084 ETKDGv3 28
A1H2A O3B 7.202 0.697 0.641 ETKDGv3 29
A1H2A O7 4.837 0.055 -0.705 ETKDGv3 30
A1H2A O9 -2.620 3.552 0.940 ETKDGv3 31
A1H2A PA 5.438 -1.479 -1.151 ETKDGv3 32
A1H2A PB 7.596 -0.939 0.460 ETKDGv3 33
A1H2A HO2 -2.846 0.093 -1.629 ETKDGv3 34
A1H2A H92 -3.939 3.537 -3.461 ETKDGv3 35
A1H2A H91 -4.540 3.627 -1.770 ETKDGv3 36
A1H2A H9 -4.596 2.058 -2.674 ETKDGv3 37
A1H2A H8 -2.042 3.597 -1.848 ETKDGv3 38
A1H2A H81 -2.087 2.088 -2.822 ETKDGv3 39
A1H2A H72 2.965 -0.391 -1.503 ETKDGv3 40
A1H2A H71 3.185 -0.734 0.272 ETKDGv3 41
A1H2A H61 3.128 2.036 -1.065 ETKDGv3 42
A1H2A H62 3.375 1.759 0.678 ETKDGv3 43
A1H2A "H6'" -4.273 0.204 2.426 ETKDGv3 44
A1H2A "H7'1" -1.092 -0.128 2.719 ETKDGv3 45
A1H2A "H7'2" -2.175 1.209 2.372 ETKDGv3 46
A1H2A HM21 -5.705 -4.309 0.893 ETKDGv3 47
A1H2A HM23 -6.543 -3.035 -0.084 ETKDGv3 48
A1H2A HM22 -5.236 -4.029 -0.832 ETKDGv3 49
A1H2A HM42 0.954 0.951 3.130 ETKDGv3 50
A1H2A HM41 2.455 0.513 2.276 ETKDGv3 51
A1H2A HM43 1.164 -0.708 2.437 ETKDGv3 52
A1H2A HN42 -0.103 -1.680 0.732 ETKDGv3 53
A1H2A HN41 -0.665 -2.956 -0.379 ETKDGv3 54
A1H2A H1 -5.020 2.892 1.464 ETKDGv3 55
A1H2A H2 5.268 -3.517 -0.425 ETKDGv3 56
A1H2A H3 7.153 -2.767 1.543 ETKDGv3 57
A1H2A H4 7.602 1.142 -0.148 ETKDGv3 58
#