data_A1H9W
#
_chem_comp.id A1H9W
_chem_comp.name "[4-(methylamino)oxan-4-yl]methanol"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H15 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-04-29
_chem_comp.pdbx_modified_date 2024-05-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 145.199
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1H9W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9F52
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1H9W N1 N1 N 0 1 N N N N N N 0.895 -13.137 10.133 -0.640 0.714 -0.995 N1 A1H9W 1
A1H9W C4 C1 C 0 1 N N N N N N 0.362 -11.470 11.891 0.553 0.696 1.147 C4 A1H9W 2
A1H9W C5 C2 C 0 1 N N N N N N 1.059 -10.136 11.928 1.890 0.969 0.453 C5 A1H9W 3
A1H9W C6 C3 C 0 1 N N N N N N 3.105 -11.157 12.531 1.706 -1.030 -0.858 C6 A1H9W 4
A1H9W C7 C4 C 0 1 N N N N N N 2.725 -11.931 11.297 0.361 -1.384 -0.217 C7 A1H9W 5
A1H9W C1 C5 C 0 1 N N N N N N -0.424 -13.768 10.180 -1.356 1.946 -0.637 C1 A1H9W 6
A1H9W C2 C6 C 0 1 N N N N N N 1.335 -12.569 11.436 -0.353 -0.094 0.198 C2 A1H9W 7
A1H9W C3 C7 C 0 1 N N N N N N 1.381 -13.726 12.439 -1.663 -0.439 0.910 C3 A1H9W 8
A1H9W O1 O1 O 0 1 N N N N N N 0.837 -13.353 13.702 -2.553 -1.073 -0.011 O1 A1H9W 9
A1H9W O2 O2 O 0 1 N N N N N N 2.137 -10.166 12.855 2.487 -0.270 0.066 O2 A1H9W 10
A1H9W H4 H1 H 0 1 N N N N N N 1.563 -13.824 9.847 -1.157 0.181 -1.678 H4 A1H9W 11
A1H9W H9 H3 H 0 1 N N N N N N -0.482 -11.419 11.187 0.725 0.116 2.053 H9 A1H9W 12
A1H9W H8 H4 H 0 1 N N N N N N -0.013 -11.711 12.897 0.076 1.641 1.404 H8 A1H9W 13
A1H9W H11 H5 H 0 1 N N N N N N 1.449 -9.903 10.926 1.722 1.584 -0.431 H11 A1H9W 14
A1H9W H10 H6 H 0 1 N N N N N N 0.341 -9.360 12.232 2.555 1.494 1.139 H10 A1H9W 15
A1H9W H13 H7 H 0 1 N N N N N N 4.073 -10.665 12.358 2.237 -1.946 -1.116 H13 A1H9W 16
A1H9W H12 H8 H 0 1 N N N N N N 3.195 -11.856 13.376 1.535 -0.442 -1.760 H12 A1H9W 17
A1H9W H15 H9 H 0 1 N N N N N N 2.720 -11.248 10.435 -0.254 -1.926 -0.936 H15 A1H9W 18
A1H9W H14 H10 H 0 1 N N N N N N 3.468 -12.725 11.131 0.529 -2.007 0.661 H14 A1H9W 19
A1H9W H1 H11 H 0 1 N N N N N N -0.678 -14.162 9.185 -1.591 2.506 -1.542 H1 A1H9W 20
A1H9W H3 H12 H 0 1 N N N N N N -0.410 -14.593 10.908 -2.280 1.691 -0.117 H3 A1H9W 21
A1H9W H2 H13 H 0 1 N N N N N N -1.176 -13.024 10.483 -0.729 2.554 0.015 H2 A1H9W 22
A1H9W H6 H14 H 0 1 N N N N N N 0.801 -14.569 12.037 -1.459 -1.114 1.740 H6 A1H9W 23
A1H9W H5 H15 H 0 1 N N N N N N 2.428 -14.034 12.579 -2.122 0.475 1.288 H5 A1H9W 24
A1H9W H7 H16 H 0 1 N N N N N N 0.882 -14.092 14.297 -3.406 -1.319 0.372 H7 A1H9W 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1H9W C1 N1 SING N N 1
A1H9W N1 C2 SING N N 2
A1H9W C2 C3 SING N N 3
A1H9W C3 O1 SING N N 4
A1H9W C2 C4 SING N N 5
A1H9W C4 C5 SING N N 6
A1H9W C5 O2 SING N N 7
A1H9W O2 C6 SING N N 8
A1H9W C6 C7 SING N N 9
A1H9W C2 C7 SING N N 10
A1H9W N1 H4 SING N N 11
A1H9W C4 H9 SING N N 12
A1H9W C4 H8 SING N N 13
A1H9W C5 H11 SING N N 14
A1H9W C5 H10 SING N N 15
A1H9W C6 H13 SING N N 16
A1H9W C6 H12 SING N N 17
A1H9W C7 H15 SING N N 18
A1H9W C7 H14 SING N N 19
A1H9W C1 H1 SING N N 20
A1H9W C1 H3 SING N N 21
A1H9W C1 H2 SING N N 22
A1H9W C3 H6 SING N N 23
A1H9W C3 H5 SING N N 24
A1H9W O1 H7 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1H9W InChI InChI 1.06 "InChI=1S/C7H15NO2/c1-8-7(6-9)2-4-10-5-3-7/h8-9H,2-6H2,1H3"
A1H9W InChIKey InChI 1.06 YLEIOMUTHKGVET-UHFFFAOYSA-N
A1H9W SMILES_CANONICAL CACTVS 3.385 "CNC1(CO)CCOCC1"
A1H9W SMILES CACTVS 3.385 "CNC1(CO)CCOCC1"
A1H9W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC1(CCOCC1)CO"
A1H9W SMILES "OpenEye OEToolkits" 2.0.7 "CNC1(CCOCC1)CO"
#
_pdbx_chem_comp_identifier.comp_id A1H9W
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[4-(methylamino)oxan-4-yl]methanol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1H9W 'Create component' 2024-04-29 PDBE
A1H9W 'Initial release' 2024-05-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A1H9W N1 N 6.465 1.747 1
A1H9W C4 C 7.014 -0.302 2
A1H9W C5 C 7.014 -1.802 3
A1H9W C6 C 4.416 -1.802 4
A1H9W C7 C 4.416 -0.302 5
A1H9W C1 C 7.965 1.747 6
A1H9W C2 C 5.715 0.448 7
A1H9W C3 C 4.965 1.747 8
A1H9W O1 O 3.465 1.747 9
A1H9W O2 O 5.715 -2.552 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A1H9W C1 N1 SINGLE NONE 1
A1H9W N1 C2 SINGLE NONE 2
A1H9W C2 C3 SINGLE NONE 3
A1H9W C3 O1 SINGLE NONE 4
A1H9W C2 C4 SINGLE NONE 5
A1H9W C4 C5 SINGLE NONE 6
A1H9W C5 O2 SINGLE NONE 7
A1H9W O2 C6 SINGLE NONE 8
A1H9W C6 C7 SINGLE NONE 9
A1H9W C2 C7 SINGLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A1H9W MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
A1H9W Z1169060901 F1 fragment CNC1(CO)CCOCC1 InChI=1S/C7H15NO2/c1-8-7(6-9)2-4-10-5-3-7/h8-9H,2-6H2,1H3 YLEIOMUTHKGVET-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A1H9W C4 S1 1
A1H9W C5 S1 1
A1H9W C6 S1 1
A1H9W C7 S1 1
A1H9W C2 S1 1
A1H9W O2 S1 1
A1H9W C1 F1 1
A1H9W N1 F1 1
A1H9W C2 F1 1
A1H9W C3 F1 1
A1H9W O1 F1 1
A1H9W C4 F1 1
A1H9W C5 F1 1
A1H9W O2 F1 1
A1H9W C6 F1 1
A1H9W C7 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A1H9W
_pdbe_chem_comp_rdkit_properties.exactmw 145.110
_pdbe_chem_comp_rdkit_properties.amw 145.202
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.600
_pdbe_chem_comp_rdkit_properties.tpsa 41.490
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.253
_pdbe_chem_comp_rdkit_properties.CrippenMR 38.930
_pdbe_chem_comp_rdkit_properties.chi0v 4.764
_pdbe_chem_comp_rdkit_properties.chi1v 2.310
_pdbe_chem_comp_rdkit_properties.chi2v 0.881
_pdbe_chem_comp_rdkit_properties.chi3v 0.881
_pdbe_chem_comp_rdkit_properties.chi4v 0.385
_pdbe_chem_comp_rdkit_properties.chi0n 19.764
_pdbe_chem_comp_rdkit_properties.chi1n 9.665
_pdbe_chem_comp_rdkit_properties.chi2n 0.881
_pdbe_chem_comp_rdkit_properties.chi3n 0.881
_pdbe_chem_comp_rdkit_properties.chi4n 0.385
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.120
_pdbe_chem_comp_rdkit_properties.kappa1 1.259
_pdbe_chem_comp_rdkit_properties.kappa2 3.324
_pdbe_chem_comp_rdkit_properties.kappa3 1.479
_pdbe_chem_comp_rdkit_properties.Phi 0.418
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
A1H9W UniChem ZINC ZINC000038121379
A1H9W UniChem SureChEMBL SCHEMBL420729
A1H9W UniChem PubChem 58026254
A1H9W UniChem Mcule MCULE-1617755077
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A1H9W N1 0.937 -1.133 -0.406 ETKDGv3 1
A1H9W C4 -0.847 0.206 -1.450 ETKDGv3 2
A1H9W C5 -2.221 -0.268 -0.936 ETKDGv3 3
A1H9W C6 -1.599 -0.559 1.284 ETKDGv3 4
A1H9W C7 -0.439 0.433 1.029 ETKDGv3 5
A1H9W C1 2.118 -1.303 0.449 ETKDGv3 6
A1H9W C2 0.256 0.193 -0.343 ETKDGv3 7
A1H9W C3 1.259 1.347 -0.653 ETKDGv3 8
A1H9W O1 2.146 1.582 0.412 ETKDGv3 9
A1H9W O2 -2.074 -1.201 0.112 ETKDGv3 10
A1H9W H4 0.266 -1.901 -0.176 ETKDGv3 11
A1H9W H9 -0.995 1.223 -1.875 ETKDGv3 12
A1H9W H8 -0.531 -0.439 -2.300 ETKDGv3 13
A1H9W H11 -2.837 0.602 -0.608 ETKDGv3 14
A1H9W H10 -2.773 -0.752 -1.769 ETKDGv3 15
A1H9W H13 -2.440 -0.041 1.796 ETKDGv3 16
A1H9W H12 -1.239 -1.349 1.978 ETKDGv3 17
A1H9W H15 0.275 0.397 1.876 ETKDGv3 18
A1H9W H14 -0.864 1.462 1.030 ETKDGv3 19
A1H9W H1 2.421 -2.372 0.444 ETKDGv3 20
A1H9W H3 1.917 -1.019 1.501 ETKDGv3 21
A1H9W H2 2.976 -0.730 0.043 ETKDGv3 22
A1H9W H6 1.852 1.083 -1.554 ETKDGv3 23
A1H9W H5 0.717 2.292 -0.893 ETKDGv3 24
A1H9W H7 1.717 2.248 1.009 ETKDGv3 25
#