data_A2K
#
_chem_comp.id A2K
_chem_comp.name
(8S,11R,13S,14S,16S,17S)-17-cyclopropylcarbonyl-16-ethenyl-13-methyl-11-(4-pyridin-3-ylphenyl)-2,6,7,8,11,12,14,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H37 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-09-27
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 503.674
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A2K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4A2K
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A2K O33 O33 O 0 1 N N N N N N 9.402 8.121 37.649 -5.651 4.478 -1.026 O33 A2K 1
A2K C1 C1 C 0 1 N N N N N N 8.929 7.507 38.592 -4.861 3.578 -0.823 C1 A2K 2
A2K C4 C4 C 0 1 N N N N N N 9.788 6.782 39.431 -4.662 3.116 0.489 C4 A2K 3
A2K C20 C20 C 0 1 N N N N N N 9.322 6.049 40.462 -3.689 2.220 0.761 C20 A2K 4
A2K C6 C6 C 0 1 N N N N N N 10.309 5.283 41.300 -3.504 1.645 2.144 C6 A2K 5
A2K C19 C19 C 0 1 N N N N N N 7.881 5.940 40.757 -2.746 1.813 -0.280 C19 A2K 6
A2K C5 C5 C 0 1 N N N N N N 6.911 6.402 39.674 -2.684 2.624 -1.553 C5 A2K 7
A2K C3 C3 C 0 1 N N N N N N 7.441 7.558 38.825 -4.116 2.972 -1.983 C3 A2K 8
A2K C8 C8 C 0 1 N N N N N N 7.449 5.385 41.912 -1.961 0.748 -0.117 C8 A2K 9
A2K C11 C11 C 0 1 N N R N N N 5.954 5.129 42.196 -0.989 0.421 -1.234 C11 A2K 10
A2K C10 C10 C 0 1 N N N N N N 5.637 5.643 43.624 -0.963 -1.089 -1.515 C10 A2K 11
A2K C12 C12 C 0 1 N N S N N N 6.574 5.081 44.691 -0.739 -1.789 -0.185 C12 A2K 12
A2K C16 C16 C 0 1 N N N N N N 6.487 3.553 44.860 0.476 -1.186 0.522 C16 A2K 13
A2K C13 C13 C 0 1 N N S N N N 8.001 5.553 44.314 -2.014 -1.567 0.670 C13 A2K 14
A2K C14 C14 C 0 1 N N N N N N 8.807 5.104 45.539 -1.818 -2.589 1.798 C14 A2K 15
A2K C9 C9 C 0 1 N N S N N N 8.438 4.961 42.980 -2.012 -0.112 1.120 C9 A2K 16
A2K C7 C7 C 0 1 N N N N N N 9.873 5.419 42.749 -3.228 0.150 1.992 C7 A2K 17
A2K C15 C15 C 0 1 N N S N N N 6.455 5.726 46.069 -0.601 -3.308 -0.254 C15 A2K 18
A2K C22 C22 C 0 1 N N N N N N 5.344 5.085 46.874 0.854 -3.697 -0.306 C22 A2K 19
A2K O24 O24 O 0 1 N N N N N N 5.557 4.260 47.723 1.445 -3.963 0.713 O24 A2K 20
A2K C23 C23 C 0 1 N N N N N N 3.931 5.481 46.586 1.572 -3.756 -1.630 C23 A2K 21
A2K C31 C31 C 0 1 N N N N N N 2.926 5.426 47.734 2.718 -4.759 -1.769 C31 A2K 22
A2K C30 C30 C 0 1 N N N N N N 2.886 4.369 46.628 3.020 -3.262 -1.671 C30 A2K 23
A2K C2 C2 C 0 1 N N S N N N 7.855 5.510 46.695 -1.267 -3.833 1.051 C2 A2K 24
A2K C39 C39 C 0 1 N N N N N N 8.319 6.800 47.311 -2.393 -4.780 0.724 C39 A2K 25
A2K C40 C40 C 0 1 N N N N N N 8.625 6.844 48.581 -2.366 -6.011 1.172 C40 A2K 26
A2K C21 C21 C 0 1 Y N N N N N 5.592 3.650 42.051 0.392 0.875 -0.837 C21 A2K 27
A2K C29 C29 C 0 1 Y N N N N N 6.379 2.802 41.274 0.551 1.752 0.221 C29 A2K 28
A2K C28 C28 C 0 1 Y N N N N N 6.071 1.460 41.136 1.814 2.171 0.590 C28 A2K 29
A2K C27 C27 C 0 1 Y N N N N N 4.950 0.911 41.772 2.929 1.708 -0.106 C27 A2K 30
A2K C26 C26 C 0 1 Y N N N N N 4.160 1.762 42.557 2.762 0.825 -1.171 C26 A2K 31
A2K C25 C25 C 0 1 Y N N N N N 4.472 3.107 42.683 1.496 0.409 -1.527 C25 A2K 32
A2K C32 C32 C 0 1 Y N N N N N 4.643 -0.539 41.658 4.289 2.155 0.285 C32 A2K 33
A2K C38 C38 C 0 1 Y N N N N N 5.671 -1.448 41.390 4.465 3.038 1.348 C38 A2K 34
A2K N37 N37 N 0 1 Y N N N N N 5.450 -2.738 41.296 5.672 3.435 1.696 N37 A2K 35
A2K C36 C36 C 0 1 Y N N N N N 4.258 -3.256 41.465 6.752 3.020 1.062 C36 A2K 36
A2K C35 C35 C 0 1 Y N N N N N 3.177 -2.444 41.736 6.660 2.142 -0.002 C35 A2K 37
A2K C34 C34 C 0 1 Y N N N N N 3.359 -1.068 41.849 5.413 1.692 -0.403 C34 A2K 38
A2K H4 H4 H 0 1 N N N N N N 10.852 6.812 39.246 -5.293 3.480 1.287 H4 A2K 39
A2K H31C H31C H 0 0 N N N N N N 7.202 8.502 39.336 -4.629 2.068 -2.310 H31C A2K 40
A2K H32C H32C H 0 0 N N N N N N 6.936 7.532 37.848 -4.083 3.687 -2.805 H32C A2K 41
A2K H61C H61C H 0 0 N N N N N N 10.311 4.223 41.005 -2.660 2.128 2.636 H61C A2K 42
A2K H62C H62C H 0 0 N N N N N N 11.318 5.701 41.170 -4.411 1.795 2.731 H62C A2K 43
A2K H71C H71C H 0 0 N N N N N N 10.541 4.810 43.376 -3.058 -0.282 2.978 H71C A2K 44
A2K H72C H72C H 0 0 N N N N N N 9.956 6.476 43.043 -4.098 -0.329 1.541 H72C A2K 45
A2K H51C H51C H 0 0 N N N N N N 6.702 5.551 39.009 -2.119 3.540 -1.376 H51C A2K 46
A2K H52C H52C H 0 0 N N N N N N 5.978 6.727 40.159 -2.200 2.040 -2.336 H52C A2K 47
A2K H11 H11 H 0 1 N N N N N N 5.357 5.710 41.477 -1.292 0.949 -2.138 H11 A2K 48
A2K H9 H9 H 0 1 N N N N N N 8.426 3.864 43.060 -1.117 0.072 1.714 H9 A2K 49
A2K H101 H101 H 0 0 N N N N N N 5.722 6.740 43.627 -1.915 -1.403 -1.944 H101 A2K 50
A2K H102 H102 H 0 0 N N N N N N 4.606 5.355 43.878 -0.150 -1.325 -2.201 H102 A2K 51
A2K H161 H161 H 0 0 N N N N N N 7.189 3.230 45.643 0.233 -0.182 0.869 H161 A2K 52
A2K H162 H162 H 0 0 N N N N N N 5.463 3.274 45.148 0.746 -1.809 1.375 H162 A2K 53
A2K H163 H163 H 0 0 N N N N N N 6.747 3.064 43.910 1.314 -1.137 -0.172 H163 A2K 54
A2K H13 H13 H 0 1 N N N N N N 8.014 6.651 44.251 -2.909 -1.801 0.093 H13 A2K 55
A2K H15 H15 H 0 1 N N N N N N 6.265 6.804 45.960 -1.126 -3.695 -1.128 H15 A2K 56
A2K H141 H141 H 0 0 N N N N N N 8.986 4.019 45.527 -1.093 -2.225 2.526 H141 A2K 57
A2K H142 H142 H 0 0 N N N N N N 9.769 5.634 45.604 -2.768 -2.818 2.280 H142 A2K 58
A2K H2 H2 H 0 1 N N N N N N 7.813 4.710 47.449 -0.521 -4.338 1.665 H2 A2K 59
A2K H23 H23 H 0 1 N N N N N N 3.776 6.271 45.837 0.953 -3.574 -2.509 H23 A2K 60
A2K H311 H311 H 0 0 N N N N N N 3.260 5.152 48.745 2.954 -5.377 -0.902 H311 A2K 61
A2K H312 H312 H 0 0 N N N N N N 2.128 6.180 47.804 2.854 -5.237 -2.739 H312 A2K 62
A2K H301 H301 H 0 0 N N N N N N 2.059 4.363 45.902 3.353 -2.756 -2.577 H301 A2K 63
A2K H302 H302 H 0 0 N N N N N N 3.192 3.335 46.844 3.453 -2.896 -0.740 H302 A2K 64
A2K H39 H39 H 0 1 N N N N N N 8.400 7.690 46.705 -3.223 -4.444 0.119 H39 A2K 65
A2K H401 H401 H 0 0 N N N N N N 8.958 7.771 49.024 -3.173 -6.689 0.937 H401 A2K 66
A2K H402 H402 H 0 0 N N N N N N 8.544 5.954 49.187 -1.536 -6.347 1.777 H402 A2K 67
A2K H29 H29 H 0 1 N N N N N N 7.247 3.200 40.769 -0.314 2.110 0.759 H29 A2K 68
A2K H25 H25 H 0 1 N N N N N N 3.838 3.745 43.280 1.366 -0.279 -2.350 H25 A2K 69
A2K H28 H28 H 0 1 N N N N N N 6.703 0.828 40.530 1.937 2.856 1.415 H28 A2K 70
A2K H26 H26 H 0 1 N N N N N N 3.297 1.365 43.070 3.623 0.463 -1.714 H26 A2K 71
A2K H38 H38 H 0 1 N N N N N N 6.677 -1.077 41.256 3.605 3.401 1.891 H38 A2K 72
A2K H34 H34 H 0 1 N N N N N N 2.526 -0.420 42.080 5.313 1.003 -1.229 H34 A2K 73
A2K H36 H36 H 0 1 N N N N N N 4.122 -4.325 41.392 7.723 3.370 1.380 H36 A2K 74
A2K H35 H35 H 0 1 N N N N N N 2.194 -2.873 41.860 7.551 1.809 -0.514 H35 A2K 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A2K O33 C1 DOUB N N 1
A2K C1 C4 SING N N 2
A2K C1 C3 SING N N 3
A2K C4 C20 DOUB N N 4
A2K C20 C6 SING N N 5
A2K C20 C19 SING N N 6
A2K C6 C7 SING N N 7
A2K C19 C5 SING N N 8
A2K C19 C8 DOUB N N 9
A2K C5 C3 SING N N 10
A2K C8 C11 SING N N 11
A2K C8 C9 SING N N 12
A2K C11 C10 SING N N 13
A2K C11 C21 SING N N 14
A2K C10 C12 SING N N 15
A2K C12 C16 SING N N 16
A2K C12 C13 SING N N 17
A2K C12 C15 SING N N 18
A2K C13 C14 SING N N 19
A2K C13 C9 SING N N 20
A2K C14 C2 SING N N 21
A2K C9 C7 SING N N 22
A2K C15 C22 SING N N 23
A2K C15 C2 SING N N 24
A2K C22 O24 DOUB N N 25
A2K C22 C23 SING N N 26
A2K C23 C31 SING N N 27
A2K C23 C30 SING N N 28
A2K C31 C30 SING N N 29
A2K C2 C39 SING N N 30
A2K C39 C40 DOUB N N 31
A2K C21 C29 SING Y N 32
A2K C21 C25 DOUB Y N 33
A2K C29 C28 DOUB Y N 34
A2K C28 C27 SING Y N 35
A2K C27 C26 DOUB Y N 36
A2K C27 C32 SING N N 37
A2K C26 C25 SING Y N 38
A2K C32 C38 SING Y N 39
A2K C32 C34 DOUB Y N 40
A2K C38 N37 DOUB Y N 41
A2K N37 C36 SING Y N 42
A2K C36 C35 DOUB Y N 43
A2K C35 C34 SING Y N 44
A2K C4 H4 SING N N 45
A2K C3 H31C SING N N 46
A2K C3 H32C SING N N 47
A2K C6 H61C SING N N 48
A2K C6 H62C SING N N 49
A2K C7 H71C SING N N 50
A2K C7 H72C SING N N 51
A2K C5 H51C SING N N 52
A2K C5 H52C SING N N 53
A2K C11 H11 SING N N 54
A2K C9 H9 SING N N 55
A2K C10 H101 SING N N 56
A2K C10 H102 SING N N 57
A2K C16 H161 SING N N 58
A2K C16 H162 SING N N 59
A2K C16 H163 SING N N 60
A2K C13 H13 SING N N 61
A2K C15 H15 SING N N 62
A2K C14 H141 SING N N 63
A2K C14 H142 SING N N 64
A2K C2 H2 SING N N 65
A2K C23 H23 SING N N 66
A2K C31 H311 SING N N 67
A2K C31 H312 SING N N 68
A2K C30 H301 SING N N 69
A2K C30 H302 SING N N 70
A2K C39 H39 SING N N 71
A2K C40 H401 SING N N 72
A2K C40 H402 SING N N 73
A2K C29 H29 SING N N 74
A2K C25 H25 SING N N 75
A2K C28 H28 SING N N 76
A2K C26 H26 SING N N 77
A2K C38 H38 SING N N 78
A2K C34 H34 SING N N 79
A2K C36 H36 SING N N 80
A2K C35 H35 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A2K SMILES ACDLabs 12.01 O=C(C1CC1)C6C(\C=C)CC7C3C(=C2C(=CC(=O)CC2)CC3)C(c5ccc(c4cccnc4)cc5)CC67C
A2K InChI InChI 1.03 InChI=1S/C35H37NO2/c1-3-21-18-31-29-14-12-25-17-27(37)13-15-28(25)32(29)30(19-35(31,2)33(21)34(38)24-10-11-24)23-8-6-22(7-9-23)26-5-4-16-36-20-26/h3-9,16-17,20-21,24,29-31,33H,1,10-15,18-19H2,2H3/t21-,29+,30-,31+,33-,35+/m1/s1
A2K InChIKey InChI 1.03 AUWGCRAJBXNPNU-WWVPXYRRSA-N
A2K SMILES_CANONICAL CACTVS 3.385 C[C@]12C[C@H](c3ccc(cc3)c4cccnc4)C5=C6CCC(=O)C=C6CC[C@H]5[C@@H]1C[C@@H](C=C)[C@@H]2C(=O)C7CC7
A2K SMILES CACTVS 3.385 C[C]12C[CH](c3ccc(cc3)c4cccnc4)C5=C6CCC(=O)C=C6CC[CH]5[CH]1C[CH](C=C)[CH]2C(=O)C7CC7
A2K SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[C@]12C[C@@H](C3=C4CCC(=O)C=C4CC[C@H]3[C@@H]1C[C@H]([C@@H]2C(=O)C5CC5)C=C)c6ccc(cc6)c7cccnc7
A2K SMILES "OpenEye OEToolkits" 1.9.2 CC12CC(C3=C4CCC(=O)C=C4CCC3C1CC(C2C(=O)C5CC5)C=C)c6ccc(cc6)c7cccnc7
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A2K "SYSTEMATIC NAME" ACDLabs 12.01 (11alpha,14beta,16alpha,17alpha)-17-(cyclopropylcarbonyl)-16-ethenyl-11-[4-(pyridin-3-yl)phenyl]estra-4,9-dien-3-one
A2K "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (8S,11R,13S,14S,16S,17S)-17-cyclopropylcarbonyl-16-ethenyl-13-methyl-11-(4-pyridin-3-ylphenyl)-2,6,7,8,11,12,14,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A2K 'Create component' 2011-09-27 EBI
A2K 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A2K O33 O 5.303 -4.880 1
A2K C1 C 6.605 -4.135 2
A2K C4 C 8.014 -4.949 3
A2K C20 C 9.417 -4.124 4
A2K C6 C 10.770 -4.905 5
A2K C19 C 9.429 -2.562 6
A2K C5 C 8.039 -1.716 7
A2K C3 C 6.617 -2.507 8
A2K C8 C 10.794 -1.801 9
A2K C11 C 10.794 -0.301 10
A2K C10 C 12.093 0.449 11
A2K C12 C 13.392 -0.301 12
A2K C16 C 13.392 1.199 13
A2K C13 C 13.392 -1.801 14
A2K C14 C 14.812 -2.258 15
A2K C9 C 12.093 -2.551 16
A2K C7 C 12.117 -4.114 17
A2K C15 C 14.812 0.156 18
A2K C22 C 15.278 1.581 19
A2K O24 O 14.276 2.698 20
A2K C23 C 16.745 1.891 21
A2K C31 C 18.171 1.425 22
A2K C30 C 17.862 2.893 23
A2K C2 C 15.687 -1.051 24
A2K C39 C 17.187 -1.051 25
A2K C40 C 17.937 -2.350 26
A2K C21 C 9.495 0.449 27
A2K C29 C 9.495 1.949 28
A2K C28 C 8.196 2.699 29
A2K C27 C 6.897 1.949 30
A2K C26 C 6.897 0.449 31
A2K C25 C 8.196 -0.301 32
A2K C32 C 5.598 2.699 33
A2K C38 C 4.299 1.949 34
A2K N37 N 3.000 2.699 35
A2K C36 C 3.000 4.199 36
A2K C35 C 4.299 4.949 37
A2K C34 C 5.598 4.199 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A2K O33 C1 DOUBLE NONE 1
A2K C1 C4 SINGLE NONE 2
A2K C1 C3 SINGLE NONE 3
A2K C4 C20 DOUBLE NONE 4
A2K C20 C6 SINGLE NONE 5
A2K C20 C19 SINGLE NONE 6
A2K C6 C7 SINGLE NONE 7
A2K C19 C5 SINGLE NONE 8
A2K C19 C8 DOUBLE NONE 9
A2K C5 C3 SINGLE NONE 10
A2K C8 C11 SINGLE NONE 11
A2K C8 C9 SINGLE NONE 12
A2K C11 C10 SINGLE NONE 13
A2K C11 C21 SINGLE BEGINWEDGE 14
A2K C10 C12 SINGLE NONE 15
A2K C12 C16 SINGLE BEGINWEDGE 16
A2K C12 C13 SINGLE NONE 17
A2K C12 C15 SINGLE NONE 18
A2K C13 C14 SINGLE NONE 19
A2K C13 C9 SINGLE NONE 20
A2K C14 C2 SINGLE NONE 21
A2K C9 C7 SINGLE NONE 22
A2K C15 C22 SINGLE BEGINWEDGE 23
A2K C15 C2 SINGLE NONE 24
A2K C22 O24 DOUBLE NONE 25
A2K C22 C23 SINGLE NONE 26
A2K C23 C31 SINGLE NONE 27
A2K C23 C30 SINGLE NONE 28
A2K C31 C30 SINGLE NONE 29
A2K C2 C39 SINGLE BEGINDASH 30
A2K C39 C40 DOUBLE NONE 31
A2K C21 C29 DOUBLE NONE 32
A2K C21 C25 SINGLE NONE 33
A2K C29 C28 SINGLE NONE 34
A2K C28 C27 DOUBLE NONE 35
A2K C27 C26 SINGLE NONE 36
A2K C27 C32 SINGLE NONE 37
A2K C26 C25 DOUBLE NONE 38
A2K C32 C38 DOUBLE NONE 39
A2K C32 C34 SINGLE NONE 40
A2K C38 N37 SINGLE NONE 41
A2K N37 C36 DOUBLE NONE 42
A2K C36 C35 SINGLE NONE 43
A2K C35 C34 DOUBLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A2K MurckoScaffold S1 scaffold 'O=C1C=C2CC[C@@H]3C(=C2CC1)[C@@H](c1ccc(-c2cccnc2)cc1)CC1[C@@H](C(=O)C2CC2)CC[C@H]13' InChI=1S/C32H33NO2/c34-24-10-12-25-22(16-24)9-11-27-26-13-14-28(32(35)21-7-8-21)30(26)17-29(31(25)27)20-5-3-19(4-6-20)23-2-1-15-33-18-23/h1-6,15-16,18,21,26-30H,7-14,17H2/t26-,27-,28-,29+,30?/m0/s1 ZSUGMKZLZMDTJR-HFXSEVENSA-N
A2K cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
A2K cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
A2K cyclopropane F3 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
A2K phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
A2K pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
A2K steroid-like F6 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A2K O33 S1 1
A2K C1 S1 1
A2K C4 S1 1
A2K C20 S1 1
A2K C6 S1 1
A2K C19 S1 1
A2K C5 S1 1
A2K C3 S1 1
A2K C8 S1 1
A2K C11 S1 1
A2K C10 S1 1
A2K C12 S1 1
A2K C13 S1 1
A2K C14 S1 1
A2K C9 S1 1
A2K C7 S1 1
A2K C15 S1 1
A2K C22 S1 1
A2K O24 S1 1
A2K C23 S1 1
A2K C31 S1 1
A2K C30 S1 1
A2K C2 S1 1
A2K C21 S1 1
A2K C29 S1 1
A2K C28 S1 1
A2K C27 S1 1
A2K C26 S1 1
A2K C25 S1 1
A2K C32 S1 1
A2K C38 S1 1
A2K N37 S1 1
A2K C36 S1 1
A2K C35 S1 1
A2K C34 S1 1
A2K C8 F1 1
A2K C11 F1 1
A2K C10 F1 1
A2K C12 F1 1
A2K C13 F1 1
A2K C9 F1 1
A2K C12 F2 1
A2K C13 F2 1
A2K C14 F2 1
A2K C2 F2 1
A2K C15 F2 1
A2K C23 F3 1
A2K C31 F3 1
A2K C30 F3 1
A2K C21 F4 1
A2K C29 F4 1
A2K C28 F4 1
A2K C27 F4 1
A2K C26 F4 1
A2K C25 F4 1
A2K C38 F5 1
A2K C32 F5 1
A2K C34 F5 1
A2K C35 F5 1
A2K C36 F5 1
A2K N37 F5 1
A2K C3 F6 1
A2K C1 F6 1
A2K C4 F6 1
A2K C20 F6 1
A2K C19 F6 1
A2K C5 F6 1
A2K C8 F6 1
A2K C9 F6 1
A2K C7 F6 1
A2K C6 F6 1
A2K C13 F6 1
A2K C12 F6 1
A2K C10 F6 1
A2K C11 F6 1
A2K C15 F6 1
A2K C2 F6 1
A2K C14 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A2K
_pdbe_chem_comp_rdkit_properties.exactmw 503.282
_pdbe_chem_comp_rdkit_properties.amw 503.686
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.457
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 277.676
_pdbe_chem_comp_rdkit_properties.tpsa 47.030
_pdbe_chem_comp_rdkit_properties.CrippenClogP 7.221
_pdbe_chem_comp_rdkit_properties.CrippenMR 148.639
_pdbe_chem_comp_rdkit_properties.chi0v 18.764
_pdbe_chem_comp_rdkit_properties.chi1v 10.855
_pdbe_chem_comp_rdkit_properties.chi2v 6.086
_pdbe_chem_comp_rdkit_properties.chi3v 6.086
_pdbe_chem_comp_rdkit_properties.chi4v 4.385
_pdbe_chem_comp_rdkit_properties.chi0n 55.764
_pdbe_chem_comp_rdkit_properties.chi1n 29.355
_pdbe_chem_comp_rdkit_properties.chi2n 6.086
_pdbe_chem_comp_rdkit_properties.chi3n 6.086
_pdbe_chem_comp_rdkit_properties.chi4n 4.385
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.070
_pdbe_chem_comp_rdkit_properties.kappa1 6.622
_pdbe_chem_comp_rdkit_properties.kappa2 9.002
_pdbe_chem_comp_rdkit_properties.kappa3 3.725
_pdbe_chem_comp_rdkit_properties.Phi 1.569
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
A2K UniChem ChEMBL CHEMBL409661
A2K UniChem PDBe A2K
A2K UniChem ZINC ZINC000029060727
A2K UniChem SureChEMBL SCHEMBL3271352
A2K UniChem BindingDb 50375437
A2K UniChem PubChem 11555183
A2K UniChem 'PubChem TPHARMA' 16657395
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A2K O33 1.740 -6.505 2.796 ETKDGv3 1
A2K C1 1.427 -5.438 2.205 ETKDGv3 2
A2K C4 0.155 -5.350 1.478 ETKDGv3 3
A2K C20 -0.250 -4.194 0.928 ETKDGv3 4
A2K C6 -1.554 -4.133 0.190 ETKDGv3 5
A2K C19 0.515 -2.931 1.140 ETKDGv3 6
A2K C5 1.645 -2.951 2.159 ETKDGv3 7
A2K C3 2.388 -4.291 2.166 ETKDGv3 8
A2K C8 0.092 -1.778 0.549 ETKDGv3 9
A2K C11 0.553 -0.400 1.065 ETKDGv3 10
A2K C10 -0.634 0.616 1.172 ETKDGv3 11
A2K C12 -1.595 0.589 -0.039 ETKDGv3 12
A2K C16 -0.896 1.218 -1.288 ETKDGv3 13
A2K C13 -2.070 -0.860 -0.246 ETKDGv3 14
A2K C14 -3.276 -0.740 -1.175 ETKDGv3 15
A2K C9 -0.913 -1.805 -0.620 ETKDGv3 16
A2K C7 -1.382 -3.226 -1.017 ETKDGv3 17
A2K C15 -2.955 1.282 0.219 ETKDGv3 18
A2K C22 -2.931 2.799 0.144 ETKDGv3 19
A2K O24 -2.984 3.368 -0.937 ETKDGv3 20
A2K C23 -2.760 3.620 1.394 ETKDGv3 21
A2K C31 -3.859 3.462 2.436 ETKDGv3 22
A2K C30 -3.803 4.713 1.579 ETKDGv3 23
A2K C2 -3.930 0.612 -0.793 ETKDGv3 24
A2K C39 -5.311 0.436 -0.200 ETKDGv3 25
A2K C40 -6.137 1.475 -0.045 ETKDGv3 26
A2K C21 1.767 0.155 0.324 ETKDGv3 27
A2K C29 2.383 1.258 0.793 ETKDGv3 28
A2K C28 3.565 1.819 0.110 ETKDGv3 29
A2K C27 4.074 1.219 -0.982 ETKDGv3 30
A2K C26 3.432 -0.021 -1.479 ETKDGv3 31
A2K C25 2.356 -0.527 -0.865 ETKDGv3 32
A2K C32 5.252 1.779 -1.693 ETKDGv3 33
A2K C38 6.291 2.316 -1.023 ETKDGv3 34
A2K N37 7.425 2.838 -1.738 ETKDGv3 35
A2K C36 7.488 2.811 -3.037 ETKDGv3 36
A2K C35 6.378 2.234 -3.817 ETKDGv3 37
A2K C34 5.314 1.742 -3.176 ETKDGv3 38
A2K H4 -0.452 -6.243 1.385 ETKDGv3 39
A2K H31C 3.066 -4.330 3.046 ETKDGv3 40
A2K H32C 3.006 -4.376 1.246 ETKDGv3 41
A2K H61C -1.868 -5.140 -0.163 ETKDGv3 42
A2K H62C -2.344 -3.734 0.862 ETKDGv3 43
A2K H71C -2.324 -3.199 -1.603 ETKDGv3 44
A2K H72C -0.616 -3.680 -1.686 ETKDGv3 45
A2K H51C 2.400 -2.168 1.935 ETKDGv3 46
A2K H52C 1.221 -2.759 3.169 ETKDGv3 47
A2K H11 0.877 -0.512 2.122 ETKDGv3 48
A2K H9 -0.412 -1.417 -1.527 ETKDGv3 49
A2K H101 -0.267 1.651 1.335 ETKDGv3 50
A2K H102 -1.210 0.358 2.089 ETKDGv3 51
A2K H161 -0.574 2.256 -1.065 ETKDGv3 52
A2K H162 0.017 0.682 -1.596 ETKDGv3 53
A2K H163 -1.571 1.251 -2.167 ETKDGv3 54
A2K H13 -2.480 -1.243 0.722 ETKDGv3 55
A2K H15 -3.283 1.003 1.247 ETKDGv3 56
A2K H141 -3.963 -1.604 -1.045 ETKDGv3 57
A2K H142 -2.940 -0.720 -2.235 ETKDGv3 58
A2K H2 -4.020 1.216 -1.724 ETKDGv3 59
A2K H23 -1.745 3.857 1.775 ETKDGv3 60
A2K H311 -4.700 2.785 2.175 ETKDGv3 61
A2K H312 -3.527 3.620 3.483 ETKDGv3 62
A2K H301 -3.440 5.611 2.121 ETKDGv3 63
A2K H302 -4.608 4.764 0.813 ETKDGv3 64
A2K H39 -5.657 -0.549 0.101 ETKDGv3 65
A2K H401 -5.838 2.476 -0.339 ETKDGv3 66
A2K H402 -7.124 1.325 0.380 ETKDGv3 67
A2K H29 2.023 1.757 1.684 ETKDGv3 68
A2K H25 1.938 -1.447 -1.246 ETKDGv3 69
A2K H28 3.995 2.735 0.494 ETKDGv3 70
A2K H26 3.847 -0.545 -2.331 ETKDGv3 71
A2K H38 6.303 2.342 0.059 ETKDGv3 72
A2K H34 4.491 1.334 -3.750 ETKDGv3 73
A2K H36 8.355 3.213 -3.544 ETKDGv3 74
A2K H35 6.425 2.216 -4.898 ETKDGv3 75
#