data_A4J
#
_chem_comp.id A4J
_chem_comp.name
6-[(3S,4S)-3,4-dihydroxypyrrolidin-1-yl]-2-[(3S)-3-hydroxy-3-methylpyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H19 F3 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-05
_chem_comp.pdbx_modified_date 2017-09-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 372.342
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A4J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5WBZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A4J N3 N1 N 0 1 N N N N N N -7.626 -1.179 21.646 -2.350 0.661 -0.840 N3 A4J 1
A4J C4 C1 C 0 1 N N N N N N -5.092 1.692 19.018 2.628 -1.934 -0.335 C4 A4J 2
A4J N2 N2 N 0 1 Y N N N N N -5.950 -0.478 20.262 -0.397 -0.424 -0.138 N2 A4J 3
A4J C7 C2 C 0 1 Y N N N N N -4.002 -1.852 19.712 1.624 0.757 0.217 C7 A4J 4
A4J C6 C3 C 0 1 Y N N N N N -4.782 -0.650 19.635 0.880 -0.436 0.209 C6 A4J 5
A4J C9 C4 C 0 1 Y N N N N N -5.776 -2.670 21.194 -0.332 1.915 -0.498 C9 A4J 6
A4J C13 C5 C 0 1 N N S N N N -9.426 0.056 22.468 -4.522 0.806 0.169 C13 A4J 7
A4J C8 C6 C 0 1 Y N N N N N -4.577 -2.858 20.511 0.991 1.954 -0.148 C8 A4J 8
A4J C16 C7 C 0 1 N N N N N N -2.709 -2.056 19.123 3.006 0.750 0.593 C16 A4J 9
A4J C1 C8 C 0 1 N N N N N N -2.723 2.182 16.173 1.308 -5.089 1.032 C1 A4J 10
A4J C2 C9 C 0 1 N N S N N N -3.889 1.630 16.980 1.378 -3.984 -0.023 C2 A4J 11
A4J C3 C10 C 0 1 N N N N N N -4.410 2.612 18.020 2.827 -3.460 -0.155 C3 A4J 12
A4J N1 N3 N 0 1 N N N N N N -4.326 0.443 18.950 1.486 -1.628 0.565 N1 A4J 13
A4J C5 C11 C 0 1 N N N N N N -3.485 0.393 17.760 0.548 -2.762 0.425 C5 A4J 14
A4J C10 C12 C 0 1 Y N N N N N -6.436 -1.448 21.037 -1.011 0.698 -0.485 C10 A4J 15
A4J C11 C13 C 0 1 N N N N N N -8.412 -2.094 22.487 -2.879 -0.713 -0.761 C11 A4J 16
A4J C12 C14 C 0 1 N N S N N N -9.781 -1.440 22.414 -4.086 -0.683 0.200 C12 A4J 17
A4J C14 C15 C 0 1 N N N N N N -8.262 0.140 21.497 -3.157 1.528 0.045 C14 A4J 18
A4J O1 O1 O 0 1 N N N N N N -8.997 0.437 23.778 -5.186 1.170 1.381 O1 A4J 19
A4J O2 O2 O 0 1 N N N N N N -10.386 -1.722 21.149 -5.135 -1.527 -0.279 O2 A4J 20
A4J C15 C16 C 0 1 N N N N N N -3.909 -4.202 20.638 1.750 3.256 -0.153 C15 A4J 21
A4J F1 F1 F 0 1 N N N N N N -4.667 -5.098 21.244 0.898 4.292 -0.551 F1 A4J 22
A4J F2 F2 F 0 1 N N N N N N -3.620 -4.744 19.446 2.234 3.519 1.133 F2 A4J 23
A4J F3 F3 F 0 1 N N N N N N -2.770 -4.143 21.358 2.824 3.166 -1.046 F3 A4J 24
A4J N4 N4 N 0 1 N N N N N N -1.673 -2.182 18.671 4.102 0.745 0.892 N4 A4J 25
A4J O3 O3 O 0 1 N N N N N N -4.941 1.239 16.087 0.907 -4.469 -1.281 O3 A4J 26
A4J H9 H1 H 0 1 N N N N N N -5.051 2.119 20.031 3.520 -1.390 -0.023 H9 A4J 27
A4J H8 H2 H 0 1 N N N N N N -6.141 1.521 18.735 2.377 -1.697 -1.369 H8 A4J 28
A4J H12 H3 H 0 1 N N N N N N -6.184 -3.445 21.826 -0.845 2.821 -0.784 H12 A4J 29
A4J H2 H4 H 0 1 N N N N N N -10.272 0.665 22.116 -5.153 1.010 -0.696 H2 A4J 30
A4J H3 H5 H 0 1 N N N N N N -1.914 2.483 16.855 0.270 -5.395 1.169 H3 A4J 31
A4J H5 H6 H 0 1 N N N N N N -2.353 1.407 15.486 1.898 -5.944 0.703 H5 A4J 32
A4J H4 H7 H 0 1 N N N N N N -3.059 3.055 15.594 1.704 -4.716 1.977 H4 A4J 33
A4J H7 H8 H 0 1 N N N N N N -3.586 3.169 18.490 3.314 -3.891 -1.030 H7 A4J 34
A4J H6 H9 H 0 1 N N N N N N -5.126 3.320 17.577 3.397 -3.671 0.749 H6 A4J 35
A4J H11 H10 H 0 1 N N N N N N -3.683 -0.519 17.178 -0.206 -2.530 -0.327 H11 A4J 36
A4J H10 H11 H 0 1 N N N N N N -2.420 0.431 18.031 0.069 -2.969 1.382 H10 A4J 37
A4J H14 H12 H 0 1 N N N N N N -8.427 -3.113 22.073 -3.201 -1.043 -1.749 H14 A4J 38
A4J H13 H13 H 0 1 N N N N N N -8.032 -2.123 23.519 -2.112 -1.385 -0.377 H13 A4J 39
A4J H1 H14 H 0 1 N N N N N N -10.413 -1.731 23.266 -3.785 -0.975 1.206 H1 A4J 40
A4J H16 H15 H 0 1 N N N N N N -7.570 0.949 21.775 -2.684 1.617 1.023 H16 A4J 41
A4J H15 H16 H 0 1 N N N N N N -8.614 0.297 20.467 -3.288 2.512 -0.406 H15 A4J 42
A4J H17 H17 H 0 1 N N N N N N -9.730 0.382 24.380 -5.434 2.104 1.427 H17 A4J 43
A4J H18 H18 H 0 1 N N N N N N -10.610 -2.644 21.103 -4.914 -2.468 -0.280 H18 A4J 44
A4J H19 H19 H 0 1 N N N N N N -5.671 0.894 16.588 1.406 -5.224 -1.623 H19 A4J 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A4J O3 C2 SING N N 1
A4J C1 C2 SING N N 2
A4J C2 C5 SING N N 3
A4J C2 C3 SING N N 4
A4J C5 N1 SING N N 5
A4J C3 C4 SING N N 6
A4J N4 C16 TRIP N N 7
A4J N1 C4 SING N N 8
A4J N1 C6 SING N N 9
A4J C16 C7 SING N N 10
A4J F2 C15 SING N N 11
A4J C6 C7 DOUB Y N 12
A4J C6 N2 SING Y N 13
A4J C7 C8 SING Y N 14
A4J N2 C10 DOUB Y N 15
A4J C8 C15 SING N N 16
A4J C8 C9 DOUB Y N 17
A4J C15 F1 SING N N 18
A4J C15 F3 SING N N 19
A4J C10 C9 SING Y N 20
A4J C10 N3 SING N N 21
A4J O2 C12 SING N N 22
A4J C14 N3 SING N N 23
A4J C14 C13 SING N N 24
A4J N3 C11 SING N N 25
A4J C12 C13 SING N N 26
A4J C12 C11 SING N N 27
A4J C13 O1 SING N N 28
A4J C4 H9 SING N N 29
A4J C4 H8 SING N N 30
A4J C9 H12 SING N N 31
A4J C13 H2 SING N N 32
A4J C1 H3 SING N N 33
A4J C1 H5 SING N N 34
A4J C1 H4 SING N N 35
A4J C3 H7 SING N N 36
A4J C3 H6 SING N N 37
A4J C5 H11 SING N N 38
A4J C5 H10 SING N N 39
A4J C11 H14 SING N N 40
A4J C11 H13 SING N N 41
A4J C12 H1 SING N N 42
A4J C14 H16 SING N N 43
A4J C14 H15 SING N N 44
A4J O1 H17 SING N N 45
A4J O2 H18 SING N N 46
A4J O3 H19 SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A4J SMILES ACDLabs 12.01 "N1(CC(C(O)C1)O)c2nc(c(c(c2)C(F)(F)F)C#N)N3CCC(C)(C3)O"
A4J InChI InChI 1.03 InChI=1S/C16H19F3N4O3/c1-15(26)2-3-22(8-15)14-9(5-20)10(16(17,18)19)4-13(21-14)23-6-11(24)12(25)7-23/h4,11-12,24-26H,2-3,6-8H2,1H3/t11-,12-,15-/m0/s1
A4J InChIKey InChI 1.03 FAXXYODRCHXHTQ-HUBLWGQQSA-N
A4J SMILES_CANONICAL CACTVS 3.385 "C[C@]1(O)CCN(C1)c2nc(cc(c2C#N)C(F)(F)F)N3C[C@H](O)[C@@H](O)C3"
A4J SMILES CACTVS 3.385 "C[C]1(O)CCN(C1)c2nc(cc(c2C#N)C(F)(F)F)N3C[CH](O)[CH](O)C3"
A4J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@]1(CCN(C1)c2c(c(cc(n2)N3C[C@@H]([C@H](C3)O)O)C(F)(F)F)C#N)O"
A4J SMILES "OpenEye OEToolkits" 2.0.6 "CC1(CCN(C1)c2c(c(cc(n2)N3CC(C(C3)O)O)C(F)(F)F)C#N)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A4J "SYSTEMATIC NAME" ACDLabs 12.01 6-[(3S,4S)-3,4-dihydroxypyrrolidin-1-yl]-2-[(3S)-3-hydroxy-3-methylpyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile
A4J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 6-[(3~{S},4~{S})-3,4-bis(oxidanyl)pyrrolidin-1-yl]-2-[(3~{S})-3-methyl-3-oxidanyl-pyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A4J 'Create component' 2017-07-05 RCSB
A4J 'Initial release' 2017-09-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A4J N3 N 9.495 2.423 1
A4J C4 C 8.111 -2.958 2
A4J N2 N 8.196 0.173 3
A4J C7 C 5.598 0.173 4
A4J C6 C 6.897 -0.577 5
A4J C9 C 6.897 2.423 6
A4J C13 C 11.869 2.928 7
A4J C8 C 5.598 1.673 8
A4J C16 C 4.299 -0.577 9
A4J C1 C 4.721 -4.848 10
A4J C2 C 6.147 -4.385 11
A4J C3 C 7.647 -4.385 12
A4J N1 N 6.897 -2.077 13
A4J C5 C 5.684 -2.958 14
A4J C10 C 8.196 1.673 15
A4J C11 C 9.652 3.915 16
A4J C12 C 11.119 4.227 17
A4J C14 C 10.866 1.813 18
A4J O1 O 13.361 2.771 19
A4J O2 O 11.729 5.597 20
A4J C15 C 4.299 2.423 21
A4J F1 F 3.000 3.173 22
A4J F2 F 5.049 3.723 23
A4J F3 F 3.549 1.124 24
A4J N4 N 3.000 -1.327 25
A4J O3 O 6.147 -5.885 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A4J O3 C2 SINGLE NONE 1
A4J C2 C1 SINGLE BEGINWEDGE 2
A4J C2 C5 SINGLE NONE 3
A4J C2 C3 SINGLE NONE 4
A4J C5 N1 SINGLE NONE 5
A4J C3 C4 SINGLE NONE 6
A4J N4 C16 TRIPLE NONE 7
A4J N1 C4 SINGLE NONE 8
A4J N1 C6 SINGLE NONE 9
A4J C16 C7 SINGLE NONE 10
A4J F2 C15 SINGLE NONE 11
A4J C6 C7 SINGLE NONE 12
A4J C6 N2 DOUBLE NONE 13
A4J C7 C8 DOUBLE NONE 14
A4J N2 C10 SINGLE NONE 15
A4J C8 C15 SINGLE NONE 16
A4J C8 C9 SINGLE NONE 17
A4J C15 F1 SINGLE NONE 18
A4J C15 F3 SINGLE NONE 19
A4J C10 C9 DOUBLE NONE 20
A4J C10 N3 SINGLE NONE 21
A4J C12 O2 SINGLE BEGINDASH 22
A4J C14 N3 SINGLE NONE 23
A4J C14 C13 SINGLE NONE 24
A4J N3 C11 SINGLE NONE 25
A4J C12 C13 SINGLE NONE 26
A4J C12 C11 SINGLE NONE 27
A4J C13 O1 SINGLE BEGINWEDGE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
A4J MurckoScaffold S1 scaffold c1cc(N2CCCC2)nc(N2CCCC2)c1 InChI=1S/C13H19N3/c1-2-9-15(8-1)12-6-5-7-13(14-12)16-10-3-4-11-16/h5-7H,1-4,8-11H2 TXDOARJXERVGPF-UHFFFAOYSA-N
A4J pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
A4J Z219104216 F2 fragment 'CCNc1ccc(C#N)cn1' InChI=1S/C8H9N3/c1-2-10-8-4-3-7(5-9)6-11-8/h3-4,6H,2H2,1H3,(H,10,11) MVJDUNKELBBNKM-UHFFFAOYSA-N
A4J Z1992316287 F3 fragment CCNc1ncccc1C InChI=1S/C8H12N2/c1-3-9-8-7(2)5-4-6-10-8/h4-6H,3H2,1-2H3,(H,9,10) DDVXXITYAVIOHO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A4J N3 S1 1
A4J C4 S1 1
A4J N2 S1 1
A4J C7 S1 1
A4J C6 S1 1
A4J C9 S1 1
A4J C13 S1 1
A4J C8 S1 1
A4J C2 S1 1
A4J C3 S1 1
A4J N1 S1 1
A4J C5 S1 1
A4J C10 S1 1
A4J C11 S1 1
A4J C12 S1 1
A4J C14 S1 1
A4J C6 F1 1
A4J C7 F1 1
A4J C8 F1 1
A4J C9 F1 1
A4J C10 F1 1
A4J N2 F1 1
A4J C13 F2 1
A4J C14 F2 1
A4J N3 F2 1
A4J C10 F2 1
A4J C9 F2 1
A4J C8 F2 1
A4J C7 F2 1
A4J C16 F2 1
A4J N4 F2 1
A4J C6 F2 1
A4J N2 F2 1
A4J C12 F2 2
A4J C11 F2 2
A4J N3 F2 2
A4J C10 F2 2
A4J C9 F2 2
A4J C8 F2 2
A4J C7 F2 2
A4J C16 F2 2
A4J N4 F2 2
A4J C6 F2 2
A4J N2 F2 2
A4J C2 F3 1
A4J C5 F3 1
A4J N1 F3 1
A4J C6 F3 1
A4J N2 F3 1
A4J C10 F3 1
A4J C9 F3 1
A4J C8 F3 1
A4J C7 F3 1
A4J C16 F3 1
A4J C3 F3 2
A4J C4 F3 2
A4J N1 F3 2
A4J C6 F3 2
A4J N2 F3 2
A4J C10 F3 2
A4J C9 F3 2
A4J C8 F3 2
A4J C7 F3 2
A4J C16 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id A4J
_pdbe_chem_comp_rdkit_properties.exactmw 372.141
_pdbe_chem_comp_rdkit_properties.amw 372.347
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 45
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 174.400
_pdbe_chem_comp_rdkit_properties.tpsa 103.850
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.396
_pdbe_chem_comp_rdkit_properties.CrippenMR 83.454
_pdbe_chem_comp_rdkit_properties.chi0v 12.147
_pdbe_chem_comp_rdkit_properties.chi1v 6.442
_pdbe_chem_comp_rdkit_properties.chi2v 2.987
_pdbe_chem_comp_rdkit_properties.chi3v 2.987
_pdbe_chem_comp_rdkit_properties.chi4v 1.949
_pdbe_chem_comp_rdkit_properties.chi0n 31.147
_pdbe_chem_comp_rdkit_properties.chi1n 15.667
_pdbe_chem_comp_rdkit_properties.chi2n 2.987
_pdbe_chem_comp_rdkit_properties.chi3n 2.987
_pdbe_chem_comp_rdkit_properties.chi4n 1.949
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.090
_pdbe_chem_comp_rdkit_properties.kappa1 6.222
_pdbe_chem_comp_rdkit_properties.kappa2 6.261
_pdbe_chem_comp_rdkit_properties.kappa3 3.422
_pdbe_chem_comp_rdkit_properties.Phi 1.498
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
A4J UniChem ChEMBL CHEMBL4070442
A4J UniChem PDBe A4J
A4J UniChem PubChem 129900198
A4J UniChem BindingDb 50241178
A4J UniChem BRENDA 252327
A4J UniChem MedChemExpress HY-103478
A4J UniChem 'Probes And Drugs' PD126333
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A4J N3 1.714 0.054 -2.022 ETKDGv3 1
A4J C4 -1.840 -0.655 2.881 ETKDGv3 2
A4J N2 0.033 -0.187 -0.214 ETKDGv3 3
A4J C7 -0.834 -2.354 0.400 ETKDGv3 4
A4J C6 -0.760 -0.868 0.563 ETKDGv3 5
A4J C9 0.857 -2.123 -1.358 ETKDGv3 6
A4J C13 2.566 2.018 -3.064 ETKDGv3 7
A4J C8 -0.035 -2.960 -0.516 ETKDGv3 8
A4J C16 -1.799 -3.126 1.151 ETKDGv3 9
A4J C1 -2.139 3.076 3.198 ETKDGv3 10
A4J C2 -2.534 1.666 2.722 ETKDGv3 11
A4J C3 -2.125 0.577 3.728 ETKDGv3 12
A4J N1 -1.536 -0.153 1.549 ETKDGv3 13
A4J C5 -1.795 1.276 1.437 ETKDGv3 14
A4J C10 0.873 -0.789 -1.210 ETKDGv3 15
A4J C11 2.699 -0.423 -2.981 ETKDGv3 16
A4J C12 3.453 0.822 -3.453 ETKDGv3 17
A4J C14 1.667 1.505 -1.940 ETKDGv3 18
A4J O1 1.774 2.408 -4.156 ETKDGv3 19
A4J O2 4.716 0.911 -2.838 ETKDGv3 20
A4J C15 -0.068 -4.462 -0.736 ETKDGv3 21
A4J F1 0.173 -5.118 0.458 ETKDGv3 22
A4J F2 -1.311 -4.834 -1.218 ETKDGv3 23
A4J F3 0.891 -4.866 -1.648 ETKDGv3 24
A4J N4 -2.570 -3.753 1.746 ETKDGv3 25
A4J O3 -3.920 1.606 2.480 ETKDGv3 26
A4J H9 -0.980 -1.225 3.297 ETKDGv3 27
A4J H8 -2.750 -1.290 2.845 ETKDGv3 28
A4J H12 1.478 -2.593 -2.108 ETKDGv3 29
A4J H2 3.173 2.883 -2.705 ETKDGv3 30
A4J H3 -1.042 3.149 3.358 ETKDGv3 31
A4J H5 -2.649 3.315 4.156 ETKDGv3 32
A4J H4 -2.438 3.830 2.439 ETKDGv3 33
A4J H7 -2.917 0.377 4.483 ETKDGv3 34
A4J H6 -1.192 0.869 4.260 ETKDGv3 35
A4J H11 -0.826 1.817 1.348 ETKDGv3 36
A4J H10 -2.411 1.486 0.535 ETKDGv3 37
A4J H14 2.179 -0.906 -3.837 ETKDGv3 38
A4J H13 3.390 -1.152 -2.503 ETKDGv3 39
A4J H1 3.606 0.780 -4.554 ETKDGv3 40
A4J H16 2.059 1.831 -0.952 ETKDGv3 41
A4J H15 0.623 1.868 -2.061 ETKDGv3 42
A4J H17 2.361 2.935 -4.758 ETKDGv3 43
A4J H18 4.575 0.945 -1.855 ETKDGv3 44
A4J H19 -4.387 1.832 3.327 ETKDGv3 45
#