data_A65
#
_chem_comp.id A65
_chem_comp.name "[3,5-bis(methylsulfanyl)-1,2-thiazol-4-yl]methanol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H9 N O S3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-08-16
_chem_comp.pdbx_modified_date 2017-10-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 207.337
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A65
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5ORV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A65 C4 C1 C 0 1 Y N N N N N -10.855 13.289 -17.219 -0.063 -0.540 -0.193 C4 A65 1
A65 C5 C2 C 0 1 N N N N N N -9.626 12.721 -17.818 -0.159 -2.023 -0.441 C5 A65 2
A65 C3 C3 C 0 1 N N N N N N -10.209 10.717 -15.329 3.822 0.847 0.045 C3 A65 3
A65 C2 C4 C 0 1 Y N N N N N -11.789 12.903 -16.159 1.124 0.112 -0.082 C2 A65 4
A65 C1 C5 C 0 1 Y N N N N N -11.482 14.572 -17.666 -1.177 0.271 -0.066 C1 A65 5
A65 O O1 O 0 1 N N N N N N -9.938 11.940 -18.974 -0.192 -2.714 0.810 O A65 6
A65 S2 S1 S 0 1 N N N N N N -11.792 11.492 -15.099 2.738 -0.587 -0.196 S2 A65 7
A65 S1 S2 S 0 1 Y N N N N N -12.861 13.848 -15.974 0.723 1.762 0.192 S1 A65 8
A65 N N1 N 0 1 Y N N N N N -12.624 14.886 -16.949 -0.958 1.540 0.147 N A65 9
A65 S S3 S 0 1 N N N N N N -10.781 15.488 -18.936 -2.810 -0.378 -0.185 S A65 10
A65 C C6 C 0 1 N N N N N N -11.912 16.872 -19.031 -3.851 1.089 0.052 C A65 11
A65 H1 H1 H 0 1 N N N N N N -8.954 13.542 -18.108 -1.070 -2.240 -1.000 H1 A65 12
A65 H2 H2 H 0 1 N N N N N N -9.125 12.082 -17.076 0.707 -2.352 -1.015 H2 A65 13
A65 H3 H3 H 0 1 N N N N N N -10.142 9.823 -14.692 4.863 0.528 -0.007 H3 A65 14
A65 H4 H4 H 0 1 N N N N N N -10.093 10.426 -16.383 3.628 1.584 -0.735 H4 A65 15
A65 H5 H5 H 0 1 N N N N N N -9.412 11.423 -15.054 3.625 1.290 1.021 H5 A65 16
A65 H6 H6 H 0 1 N N N N N N -9.137 11.585 -19.343 -0.253 -3.675 0.726 H6 A65 17
A65 H8 H8 H 0 1 N N N N N N -11.583 17.562 -19.822 -4.901 0.802 -0.003 H8 A65 18
A65 H9 H9 H 0 1 N N N N N N -12.923 16.504 -19.263 -3.644 1.526 1.029 H9 A65 19
A65 H10 H10 H 0 1 N N N N N N -11.926 17.401 -18.066 -3.632 1.819 -0.727 H10 A65 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A65 C4 C5 SING N N 1
A65 C4 C2 DOUB Y N 2
A65 C4 C1 SING Y N 3
A65 C5 O SING N N 4
A65 C3 S2 SING N N 5
A65 C2 S2 SING N N 6
A65 C2 S1 SING Y N 7
A65 C1 N DOUB Y N 8
A65 C1 S SING N N 9
A65 S1 N SING Y N 10
A65 S C SING N N 11
A65 C5 H1 SING N N 12
A65 C5 H2 SING N N 13
A65 C3 H3 SING N N 14
A65 C3 H4 SING N N 15
A65 C3 H5 SING N N 16
A65 O H6 SING N N 17
A65 C H8 SING N N 18
A65 C H9 SING N N 19
A65 C H10 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A65 InChI InChI 1.03 InChI=1S/C6H9NOS3/c1-9-5-4(3-8)6(10-2)11-7-5/h8H,3H2,1-2H3
A65 InChIKey InChI 1.03 SIFVTEYXNRZCMI-UHFFFAOYSA-N
A65 SMILES_CANONICAL CACTVS 3.385 CSc1snc(SC)c1CO
A65 SMILES CACTVS 3.385 CSc1snc(SC)c1CO
A65 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CSc1c(c(sn1)SC)CO
A65 SMILES "OpenEye OEToolkits" 2.0.6 CSc1c(c(sn1)SC)CO
#
_pdbx_chem_comp_identifier.comp_id A65
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "[3,5-bis(methylsulfanyl)-1,2-thiazol-4-yl]methanol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A65 'Create component' 2017-08-16 EBI
A65 'Initial release' 2017-11-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
A65 C4 C 6.755 -0.436 1
A65 C5 C 6.755 1.064 2
A65 C3 C 3.000 -1.858 3
A65 C2 C 5.541 -1.318 4
A65 C1 C 7.968 -1.318 5
A65 O O 8.054 1.814 6
A65 S2 S 4.115 -0.854 7
A65 S1 S 6.005 -2.744 8
A65 N N 7.505 -2.744 9
A65 S S 9.395 -0.854 10
A65 C C 10.510 -1.858 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
A65 C4 C5 SINGLE NONE 1
A65 C4 C2 DOUBLE NONE 2
A65 C4 C1 SINGLE NONE 3
A65 C5 O SINGLE NONE 4
A65 C3 S2 SINGLE NONE 5
A65 C2 S2 SINGLE NONE 6
A65 C2 S1 SINGLE NONE 7
A65 C1 N DOUBLE NONE 8
A65 C1 S SINGLE NONE 9
A65 S1 N SINGLE NONE 10
A65 S C SINGLE NONE 11
#
_pdbe_chem_comp_substructure.comp_id A65
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles c1cnsc1
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C3H3NS/c1-2-4-5-3-1/h1-3H
_pdbe_chem_comp_substructure.substructure_inchikeys ZLTPDFXIESTBQG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
A65 C4 S1 1
A65 C2 S1 1
A65 C1 S1 1
A65 S1 S1 1
A65 N S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id A65
_pdbe_chem_comp_rdkit_properties.exactmw 206.985
_pdbe_chem_comp_rdkit_properties.amw 207.345
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 91.299
_pdbe_chem_comp_rdkit_properties.tpsa 33.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.808
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.473
_pdbe_chem_comp_rdkit_properties.chi0v 7.530
_pdbe_chem_comp_rdkit_properties.chi1v 4.787
_pdbe_chem_comp_rdkit_properties.chi2v 3.032
_pdbe_chem_comp_rdkit_properties.chi3v 3.032
_pdbe_chem_comp_rdkit_properties.chi4v 2.110
_pdbe_chem_comp_rdkit_properties.chi0n 14.080
_pdbe_chem_comp_rdkit_properties.chi1n 6.789
_pdbe_chem_comp_rdkit_properties.chi2n 0.921
_pdbe_chem_comp_rdkit_properties.chi3n 0.921
_pdbe_chem_comp_rdkit_properties.chi4n 0.486
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.290
_pdbe_chem_comp_rdkit_properties.kappa1 2.904
_pdbe_chem_comp_rdkit_properties.kappa2 4.349
_pdbe_chem_comp_rdkit_properties.kappa3 1.900
_pdbe_chem_comp_rdkit_properties.Phi 1.148
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
A65 UniChem ChEMBL CHEMBL1891657
A65 UniChem PDBe A65
A65 UniChem ChEBI 194623
A65 UniChem ZINC ZINC000000105809
A65 UniChem eMolecules 5835749
A65 UniChem PubChem 2739015
A65 UniChem Mcule MCULE-9261045275
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
A65 C4 0.158 0.236 -0.634 ETKDGv3 1
A65 C5 0.212 1.595 0.010 ETKDGv3 2
A65 C3 2.686 -1.071 1.345 ETKDGv3 3
A65 C2 1.228 -0.553 -0.787 ETKDGv3 4
A65 C1 -1.086 -0.327 -1.262 ETKDGv3 5
A65 O 0.407 2.581 -0.966 ETKDGv3 6
A65 S2 2.911 -0.232 -0.253 ETKDGv3 7
A65 S1 0.700 -1.973 -1.676 ETKDGv3 8
A65 N -0.975 -1.483 -1.851 ETKDGv3 9
A65 S -2.661 0.528 -1.236 ETKDGv3 10
A65 C -3.200 -0.268 0.309 ETKDGv3 11
A65 H1 1.012 1.645 0.782 ETKDGv3 12
A65 H2 -0.744 1.796 0.534 ETKDGv3 13
A65 H3 2.425 -2.137 1.181 ETKDGv3 14
A65 H4 3.633 -1.016 1.920 ETKDGv3 15
A65 H5 1.882 -0.574 1.928 ETKDGv3 16
A65 H6 1.366 2.541 -1.221 ETKDGv3 17
A65 H8 -4.206 0.111 0.581 ETKDGv3 18
A65 H9 -3.256 -1.368 0.170 ETKDGv3 19
A65 H10 -2.491 -0.031 1.130 ETKDGv3 20
#