data_ACP
#
_chem_comp.id ACP
_chem_comp.name "PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H18 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 505.208
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ACP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DAH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ACP PG PG P 0 1 N N N N N N 0.855 23.263 12.268 1.232 -0.258 -7.184 PG ACP 1
ACP O1G O1G O 0 1 N N N N N N 0.261 24.067 11.155 1.776 1.110 -7.046 O1G ACP 2
ACP O2G O2G O 0 1 N N N N N N 1.546 24.269 13.322 2.162 -1.107 -8.188 O2G ACP 3
ACP O3G O3G O 0 1 N N N N N N -0.131 22.359 12.910 -0.264 -0.184 -7.773 O3G ACP 4
ACP PB PB P 0 1 N N S N N N 3.960 22.989 11.443 0.150 -0.107 -4.415 PB ACP 5
ACP O1B O1B O 0 1 N N N N N N 4.312 23.616 12.735 -1.225 -0.039 -4.956 O1B ACP 6
ACP O2B O2B O 0 1 N N N N N N 3.924 23.959 10.301 0.742 1.382 -4.265 O2B ACP 7
ACP C3B C3B C 0 1 N N N N N N 2.284 22.270 11.671 1.203 -1.068 -5.551 C3B ACP 8
ACP PA PA P 0 1 N N R N N N 5.743 20.743 12.106 -0.817 0.074 -2.025 PA ACP 9
ACP O1A O1A O 0 1 N N N N N N 4.831 20.274 13.183 -2.178 0.139 -2.603 O1A ACP 10
ACP O2A O2A O 0 1 N N N N N N 7.006 21.290 12.660 -0.209 1.560 -1.915 O2A ACP 11
ACP O3A O3A O 0 1 N N N N N N 5.012 21.836 11.181 0.125 -0.822 -2.973 O3A ACP 12
ACP "O5'" O5* O 0 1 N N N N N N 6.031 19.560 11.060 -0.888 -0.586 -0.558 "O5'" ACP 13
ACP "C5'" C5* C 0 1 N N N N N N 4.979 19.095 10.193 -1.735 0.251 0.230 "C5'" ACP 14
ACP "C4'" C4* C 0 1 N N R N N N 5.256 17.654 9.808 -1.846 -0.323 1.644 "C4'" ACP 15
ACP "O4'" O4* O 0 1 N N N N N N 6.374 17.632 8.893 -0.547 -0.360 2.275 "O4'" ACP 16
ACP "C3'" C3* C 0 1 N N S N N N 5.652 16.801 11.014 -2.694 0.605 2.540 "C3'" ACP 17
ACP "O3'" O3* O 0 1 N N N N N N 5.204 15.448 10.861 -4.037 0.127 2.628 "O3'" ACP 18
ACP "C2'" C2* C 0 1 N N R N N N 7.170 16.925 11.034 -2.000 0.532 3.921 "C2'" ACP 19
ACP "O2'" O2* O 0 1 N N N N N N 7.857 15.936 11.824 -2.896 0.008 4.904 "O2'" ACP 20
ACP "C1'" C1* C 0 1 N N R N N N 7.474 16.946 9.532 -0.814 -0.430 3.692 "C1'" ACP 21
ACP N9 N9 N 0 1 Y N N N N N 8.709 17.720 9.213 0.355 0.011 4.455 N9 ACP 22
ACP C8 C8 C 0 1 Y N N N N N 8.895 19.019 9.421 1.312 0.885 4.030 C8 ACP 23
ACP N7 N7 N 0 1 Y N N N N N 10.183 19.294 9.183 2.206 1.052 4.960 N7 ACP 24
ACP C5 C5 C 0 1 Y N N N N N 10.799 18.177 8.819 1.878 0.304 6.041 C5 ACP 25
ACP C6 C6 C 0 1 Y N N N N N 12.115 17.856 8.463 2.456 0.082 7.302 C6 ACP 26
ACP N6 N6 N 0 1 N N N N N N 13.104 18.732 8.587 3.629 0.721 7.665 N6 ACP 27
ACP N1 N1 N 0 1 Y N N N N N 12.377 16.579 8.108 1.848 -0.750 8.140 N1 ACP 28
ACP C2 C2 C 0 1 Y N N N N N 11.429 15.645 8.114 0.729 -1.363 7.803 C2 ACP 29
ACP N3 N3 N 0 1 Y N N N N N 10.204 15.928 8.483 0.154 -1.191 6.631 N3 ACP 30
ACP C4 C4 C 0 1 Y N N N N N 9.849 17.174 8.827 0.689 -0.377 5.727 C4 ACP 31
ACP HOG2 2HOG H 0 0 N N N N N N 1.923 23.758 14.028 2.150 -0.645 -9.038 HOG2 ACP 32
ACP HOG3 3HOG H 0 0 N N N N N N 0.246 21.848 13.616 -0.581 -1.094 -7.847 HOG3 ACP 33
ACP HOB2 2HOB H 0 0 N N N N N N 3.697 23.556 9.470 1.637 1.292 -3.910 HOB2 ACP 34
ACP H3B1 1H3B H 0 0 N N N N N N 2.385 21.387 12.344 2.216 -1.118 -5.153 H3B1 ACP 35
ACP H3B2 2H3B H 0 0 N N N N N N 1.986 21.797 10.705 0.802 -2.076 -5.653 H3B2 ACP 36
ACP HOA2 2HOA H 0 0 N N N N N N 7.588 21.589 11.972 0.675 1.473 -1.535 HOA2 ACP 37
ACP "H5'1" 1H5* H 0 0 N N N N N N 3.967 19.226 10.644 -2.726 0.296 -0.221 "H5'1" ACP 38
ACP "H5'2" 2H5* H 0 0 N N N N N N 4.840 19.752 9.303 -1.312 1.254 0.278 "H5'2" ACP 39
ACP "H4'" H4* H 0 1 N N N N N N 4.323 17.240 9.359 -2.281 -1.322 1.614 "H4'" ACP 40
ACP "H3'" H3* H 0 1 N N N N N N 5.189 17.132 11.973 -2.676 1.626 2.157 "H3'" ACP 41
ACP "HO3'" *HO3 H 0 0 N N N N N N 5.450 14.918 11.610 -4.517 0.745 3.197 "HO3'" ACP 42
ACP "H2'" H2* H 0 1 N N N N N N 7.554 17.826 11.565 -1.640 1.516 4.220 "H2'" ACP 43
ACP "HO2'" *HO2 H 0 0 N N N N N N 8.803 16.013 11.836 -3.642 0.621 4.957 "HO2'" ACP 44
ACP "H1'" H1* H 0 1 N N N N N N 7.615 15.895 9.184 -1.090 -1.446 3.977 "H1'" ACP 45
ACP H8 H8 H 0 1 N N N N N N 8.120 19.738 9.734 1.326 1.366 3.063 H8 ACP 46
ACP HN61 1HN6 H 0 0 N N N N N N 14.062 18.498 8.327 4.017 0.563 8.540 HN61 ACP 47
ACP HN62 2HN6 H 0 0 N N N N N N 13.112 19.059 9.552 4.066 1.323 7.043 HN62 ACP 48
ACP H2 H2 H 0 1 N N N N N N 11.664 14.612 7.806 0.267 -2.032 8.514 H2 ACP 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ACP PG O1G DOUB N N 1
ACP PG O2G SING N N 2
ACP PG O3G SING N N 3
ACP PG C3B SING N N 4
ACP O2G HOG2 SING N N 5
ACP O3G HOG3 SING N N 6
ACP PB O1B DOUB N N 7
ACP PB O2B SING N N 8
ACP PB C3B SING N N 9
ACP PB O3A SING N N 10
ACP O2B HOB2 SING N N 11
ACP C3B H3B1 SING N N 12
ACP C3B H3B2 SING N N 13
ACP PA O1A DOUB N N 14
ACP PA O2A SING N N 15
ACP PA O3A SING N N 16
ACP PA "O5'" SING N N 17
ACP O2A HOA2 SING N N 18
ACP "O5'" "C5'" SING N N 19
ACP "C5'" "C4'" SING N N 20
ACP "C5'" "H5'1" SING N N 21
ACP "C5'" "H5'2" SING N N 22
ACP "C4'" "O4'" SING N N 23
ACP "C4'" "C3'" SING N N 24
ACP "C4'" "H4'" SING N N 25
ACP "O4'" "C1'" SING N N 26
ACP "C3'" "O3'" SING N N 27
ACP "C3'" "C2'" SING N N 28
ACP "C3'" "H3'" SING N N 29
ACP "O3'" "HO3'" SING N N 30
ACP "C2'" "O2'" SING N N 31
ACP "C2'" "C1'" SING N N 32
ACP "C2'" "H2'" SING N N 33
ACP "O2'" "HO2'" SING N N 34
ACP "C1'" N9 SING N N 35
ACP "C1'" "H1'" SING N N 36
ACP N9 C8 SING Y N 37
ACP N9 C4 SING Y N 38
ACP C8 N7 DOUB Y N 39
ACP C8 H8 SING N N 40
ACP N7 C5 SING Y N 41
ACP C5 C6 SING Y N 42
ACP C5 C4 DOUB Y N 43
ACP C6 N6 SING N N 44
ACP C6 N1 DOUB Y N 45
ACP N6 HN61 SING N N 46
ACP N6 HN62 SING N N 47
ACP N1 C2 SING Y N 48
ACP C2 N3 DOUB Y N 49
ACP C2 H2 SING N N 50
ACP N3 C4 SING Y N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ACP SMILES ACDLabs 10.04 O=P(O)(O)CP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
ACP SMILES_CANONICAL CACTVS 3.341 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O
ACP SMILES CACTVS 3.341 Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O
ACP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(CP(=O)(O)O)O)O)O)N
ACP SMILES "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(CP(=O)(O)O)O)O)O)N
ACP InChI InChI 1.03 InChI=1S/C11H18N5O12P3/c12-9-6-10(14-2-13-9)16(3-15-6)11-8(18)7(17)5(27-11)1-26-31(24,25)28-30(22,23)4-29(19,20)21/h2-3,5,7-8,11,17-18H,1,4H2,(H,22,23)(H,24,25)(H2,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1
ACP InChIKey InChI 1.03 UFZTZBNSLXELAL-IOSLPCCCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ACP "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonomethyl)phosphoryl]oxy}phosphoryl]adenosine"
ACP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methylphosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ACP 'Create component' 1999-07-08 EBI
ACP 'Modify descriptor' 2011-06-04 RCSB
ACP 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ACP
_pdbx_chem_comp_synonyms.name "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id ACP
_pdbe_chem_comp_drugbank_details.drugbank_id DB03909
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name "Adenosine-5'-[Beta, Gamma-Methylene]Triphosphate"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id ACP
_pdbe_chem_comp_synonyms.name "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id ACP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03909
_pdbe_chem_comp_drugbank_classification.parent 'Purine ribonucleoside monophosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Purine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as purine ribonucleoside monophosphates. These are nucleotides consisting of a purine base linked to a ribose to which one monophosphate group is attached.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
ACP DB03909 'Folylpolyglutamate synthase' 'Lactobacillus casei' P15925 unknown 1
ACP DB03909 'Chemotaxis protein CheA' 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' Q56310 unknown 2
ACP DB03909 'UDP-N-acetylmuramate--L-alanine ligase' 'Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)' P45066 unknown 3
ACP DB03909 'Thermoresistant gluconokinase' 'Escherichia coli (strain K12)' P46859 unknown 4
ACP DB03909 'Phosphoribosylglycinamide formyltransferase 2' 'Escherichia coli (strain K12)' P33221 unknown 5
ACP DB03909 'Insulin receptor' Humans P06213 unknown 6
ACP DB03909 'Sarcoplasmic/endoplasmic reticulum calcium ATPase 1' Humans O14983 unknown 7
ACP DB03909 'Pyridoxal kinase' Humans O00764 unknown 8
ACP DB03909 'Phosphoglycerate kinase 1' Humans P00558 unknown 9
ACP DB03909 'Serine/threonine-protein kinase PknB' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WI81 unknown 10
ACP DB03909 Ribokinase 'Escherichia coli (strain K12)' P0A9J6 unknown 11
ACP DB03909 'Putative sugar kinase' 'Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)' Q8ZKR2 unknown 12
ACP DB03909 'Probable butyrate kinase 2' 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' Q9X278 unknown 13
ACP DB03909 'Kinesin-like protein KIF1A' Humans Q12756 unknown 14
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ACP PG P 8.660 7.728 1
ACP O1G O 8.199 9.155 2
ACP O2G O 10.088 8.189 3
ACP O3G O 7.233 7.267 4
ACP PB P 8.116 5.188 5
ACP O1B O 7.003 6.193 6
ACP O2B O 9.229 4.182 7
ACP C3B C 9.121 6.301 8
ACP PA P 7.571 2.647 9
ACP O1A O 8.998 3.108 10
ACP O2A O 6.144 2.186 11
ACP O3A O 7.110 4.075 12
ACP "O5'" O 8.032 1.220 13
ACP "C5'" C 7.027 0.107 14
ACP "C4'" C 7.487 -1.320 15
ACP "O4'" O 6.604 -2.532 16
ACP "C3'" C 8.913 -1.786 17
ACP "O3'" O 10.129 -0.907 18
ACP "C2'" C 8.911 -3.287 19
ACP "O2'" O 10.123 -4.170 20
ACP "C1'" C 7.483 -3.748 21
ACP N9 N 7.018 -5.173 22
ACP C8 C 7.893 -6.380 23
ACP N7 N 7.018 -7.588 24
ACP C5 C 5.598 -7.130 25
ACP C6 C 4.299 -7.880 26
ACP N6 N 4.299 -9.380 27
ACP N1 N 3.000 -7.130 28
ACP C2 C 3.000 -5.630 29
ACP N3 N 4.299 -4.880 30
ACP C4 C 5.598 -5.630 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ACP PG O1G DOUBLE NONE 1
ACP PG O2G SINGLE NONE 2
ACP PG O3G SINGLE NONE 3
ACP PG C3B SINGLE NONE 4
ACP PB O1B DOUBLE NONE 5
ACP PB O2B SINGLE BEGINWEDGE 6
ACP PB C3B SINGLE NONE 7
ACP PB O3A SINGLE NONE 8
ACP PA O1A DOUBLE NONE 9
ACP PA O2A SINGLE BEGINDASH 10
ACP PA O3A SINGLE NONE 11
ACP PA "O5'" SINGLE NONE 12
ACP "O5'" "C5'" SINGLE NONE 13
ACP "C4'" "C5'" SINGLE BEGINDASH 14
ACP "C4'" "O4'" SINGLE NONE 15
ACP "C4'" "C3'" SINGLE NONE 16
ACP "O4'" "C1'" SINGLE NONE 17
ACP "C3'" "O3'" SINGLE BEGINWEDGE 18
ACP "C3'" "C2'" SINGLE NONE 19
ACP "C2'" "O2'" SINGLE BEGINWEDGE 20
ACP "C2'" "C1'" SINGLE NONE 21
ACP "C1'" N9 SINGLE BEGINDASH 22
ACP N9 C8 SINGLE NONE 23
ACP N9 C4 SINGLE NONE 24
ACP C8 N7 DOUBLE NONE 25
ACP N7 C5 SINGLE NONE 26
ACP C5 C6 SINGLE NONE 27
ACP C5 C4 DOUBLE NONE 28
ACP C6 N6 SINGLE NONE 29
ACP C6 N1 DOUBLE NONE 30
ACP N1 C2 SINGLE NONE 31
ACP C2 N3 DOUBLE NONE 32
ACP N3 C4 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ACP MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
ACP adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
ACP imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
ACP phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
ACP purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
ACP pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
ACP ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ACP "C4'" S1 1
ACP "O4'" S1 1
ACP "C3'" S1 1
ACP "C2'" S1 1
ACP "C1'" S1 1
ACP N9 S1 1
ACP C8 S1 1
ACP N7 S1 1
ACP C5 S1 1
ACP C6 S1 1
ACP N1 S1 1
ACP C2 S1 1
ACP N3 S1 1
ACP C4 S1 1
ACP N1 F1 1
ACP C6 F1 1
ACP C5 F1 1
ACP C4 F1 1
ACP N3 F1 1
ACP C2 F1 1
ACP N9 F1 1
ACP C8 F1 1
ACP N7 F1 1
ACP N6 F1 1
ACP C5 F2 1
ACP C4 F2 1
ACP N9 F2 1
ACP C8 F2 1
ACP N7 F2 1
ACP O2A F3 1
ACP PA F3 1
ACP O1A F3 1
ACP O3A F3 1
ACP "O5'" F3 1
ACP N7 F4 1
ACP C8 F4 1
ACP N9 F4 1
ACP C4 F4 1
ACP C5 F4 1
ACP C6 F4 1
ACP N1 F4 1
ACP C2 F4 1
ACP N3 F4 1
ACP C5 F5 1
ACP C6 F5 1
ACP N1 F5 1
ACP C2 F5 1
ACP N3 F5 1
ACP C4 F5 1
ACP "C2'" F6 1
ACP "C3'" F6 1
ACP "C4'" F6 1
ACP "O4'" F6 1
ACP "C1'" F6 1
ACP "C5'" F6 1
ACP "O5'" F6 1
ACP "O3'" F6 1
ACP "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ACP
_pdbe_chem_comp_rdkit_properties.exactmw 505.016
_pdbe_chem_comp_rdkit_properties.amw 505.210
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 20
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 198.222
_pdbe_chem_comp_rdkit_properties.tpsa 269.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.327
_pdbe_chem_comp_rdkit_properties.CrippenMR 96.228
_pdbe_chem_comp_rdkit_properties.chi0v 16.660
_pdbe_chem_comp_rdkit_properties.chi1v 11.576
_pdbe_chem_comp_rdkit_properties.chi2v 6.855
_pdbe_chem_comp_rdkit_properties.chi3v 6.855
_pdbe_chem_comp_rdkit_properties.chi4v 4.944
_pdbe_chem_comp_rdkit_properties.chi0n 31.977
_pdbe_chem_comp_rdkit_properties.chi1n 15.374
_pdbe_chem_comp_rdkit_properties.chi2n 2.920
_pdbe_chem_comp_rdkit_properties.chi3n 2.920
_pdbe_chem_comp_rdkit_properties.chi4n 1.888
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.320
_pdbe_chem_comp_rdkit_properties.kappa1 9.891
_pdbe_chem_comp_rdkit_properties.kappa2 8.555
_pdbe_chem_comp_rdkit_properties.kappa3 5.732
_pdbe_chem_comp_rdkit_properties.Phi 2.730
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ACP UniChem ChEMBL CHEMBL133463
ACP UniChem DrugBank DB03909
ACP UniChem PDBe ACP
ACP UniChem 'Guide to Pharmacology' 4236
ACP UniChem 'KEGG LIGAND' C13741
ACP UniChem ChEBI 40532
ACP UniChem ZINC ZINC000008295124
ACP UniChem SureChEMBL SCHEMBL2037068
ACP UniChem ACTor 3469-78-1
ACP UniChem Nikkaji J152.173J
ACP UniChem BindingDb 18135
ACP UniChem BindingDb 50370142
ACP UniChem BRENDA 101853
ACP UniChem BRENDA 103848
ACP UniChem BRENDA 10578
ACP UniChem BRENDA 107542
ACP UniChem BRENDA 115459
ACP UniChem BRENDA 127477
ACP UniChem BRENDA 129621
ACP UniChem BRENDA 137106
ACP UniChem BRENDA 232724
ACP UniChem BRENDA 237286
ACP UniChem BRENDA 243808
ACP UniChem BRENDA 29702
ACP UniChem BRENDA 3802
ACP UniChem BRENDA 43847
ACP UniChem BRENDA 43857
ACP UniChem BRENDA 48281
ACP UniChem BRENDA 48707
ACP UniChem BRENDA 51109
ACP UniChem BRENDA 54427
ACP UniChem BRENDA 8056
ACP UniChem BRENDA 88136
ACP UniChem BRENDA 92304
ACP UniChem BRENDA 92310
ACP UniChem BRENDA 92755
ACP UniChem ChemicalBook CB6920443
ACP UniChem MedChemExpress HY-106723
ACP UniChem 'Probes And Drugs' PD049407
ACP UniChem PubChem 91532
ACP UniChem 'PubChem TPHARMA' 15382394
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ACP PG -7.084 -1.338 -0.821 ETKDGv3 1
ACP O1G -6.389 -2.611 -1.248 ETKDGv3 2
ACP O2G -7.278 -1.340 0.860 ETKDGv3 3
ACP O3G -8.603 -1.256 -1.561 ETKDGv3 4
ACP PB -4.468 0.084 -0.529 ETKDGv3 5
ACP O1B -4.655 0.171 0.971 ETKDGv3 6
ACP O2B -3.590 1.426 -1.072 ETKDGv3 7
ACP C3B -6.099 0.104 -1.332 ETKDGv3 8
ACP PA -2.238 -1.447 -0.041 ETKDGv3 9
ACP O1A -1.409 -2.597 -0.570 ETKDGv3 10
ACP O2A -2.638 -1.747 1.580 ETKDGv3 11
ACP O3A -3.664 -1.353 -0.963 ETKDGv3 12
ACP "O5'" -1.346 0.001 -0.189 ETKDGv3 13
ACP "C5'" -0.275 -0.034 0.723 ETKDGv3 14
ACP "C4'" 0.613 1.198 0.517 ETKDGv3 15
ACP "O4'" 1.626 1.216 1.496 ETKDGv3 16
ACP "C3'" 1.286 1.212 -0.851 ETKDGv3 17
ACP "O3'" 0.478 1.833 -1.819 ETKDGv3 18
ACP "C2'" 2.546 2.000 -0.590 ETKDGv3 19
ACP "O2'" 2.362 3.357 -0.910 ETKDGv3 20
ACP "C1'" 2.757 1.836 0.922 ETKDGv3 21
ACP N9 3.947 1.032 1.197 ETKDGv3 22
ACP C8 5.304 1.492 1.112 ETKDGv3 23
ACP N7 6.171 0.544 0.902 ETKDGv3 24
ACP C5 5.381 -0.637 0.823 ETKDGv3 25
ACP C6 5.782 -1.993 0.431 ETKDGv3 26
ACP N6 7.154 -2.338 0.243 ETKDGv3 27
ACP N1 4.843 -2.884 0.250 ETKDGv3 28
ACP C2 3.443 -2.546 0.419 ETKDGv3 29
ACP N3 3.090 -1.334 0.756 ETKDGv3 30
ACP C4 4.115 -0.357 0.974 ETKDGv3 31
ACP HOG2 -7.760 -0.498 1.059 ETKDGv3 32
ACP HOG3 -9.112 -2.016 -1.180 ETKDGv3 33
ACP HOB2 -4.109 2.211 -0.764 ETKDGv3 34
ACP H3B1 -5.965 0.084 -2.433 ETKDGv3 35
ACP H3B2 -6.636 1.033 -1.049 ETKDGv3 36
ACP HOA2 -1.854 -2.220 1.958 ETKDGv3 37
ACP "H5'1" -0.664 -0.001 1.766 ETKDGv3 38
ACP "H5'2" 0.343 -0.951 0.593 ETKDGv3 39
ACP "H4'" -0.010 2.113 0.642 ETKDGv3 40
ACP "H3'" 1.569 0.179 -1.169 ETKDGv3 41
ACP "HO3'" -0.103 1.127 -2.204 ETKDGv3 42
ACP "H2'" 3.388 1.578 -1.189 ETKDGv3 43
ACP "HO2'" 3.263 3.772 -0.901 ETKDGv3 44
ACP "H1'" 2.887 2.829 1.405 ETKDGv3 45
ACP H8 5.586 2.535 1.185 ETKDGv3 46
ACP HN61 7.422 -3.306 -0.040 ETKDGv3 47
ACP HN62 7.906 -1.627 0.387 ETKDGv3 48
ACP H2 2.685 -3.299 0.253 ETKDGv3 49
#