data_AF1
#
_chem_comp.id AF1
_chem_comp.name
4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucopyranose
_chem_comp.type "D-saccharide, beta linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C13 H23 N O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucose;
4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose;
4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 321.324
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AF1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BG9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 AF1 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucose PDB ?
2 AF1 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose PDB ?
3 AF1 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AF1 C1 C1 C 0 1 N N R N N N 7.442 42.618 41.677 4.208 0.486 -0.215 C1 AF1 1
AF1 C2 C2 C 0 1 N N R N N N 6.716 43.985 41.719 3.605 -0.705 0.534 C2 AF1 2
AF1 C3 C3 C 0 1 N N S N N N 5.465 43.876 40.900 2.299 -1.120 -0.152 C3 AF1 3
AF1 C4 C4 C 0 1 N N S N N N 5.818 43.598 39.423 1.351 0.083 -0.192 C4 AF1 4
AF1 C5 C5 C 0 1 N N R N N N 6.888 42.436 39.317 2.042 1.243 -0.913 C5 AF1 5
AF1 C6 C6 C 0 1 N N N N N N 7.050 41.443 38.175 1.125 2.468 -0.904 C6 AF1 6
AF1 O1 O1 O 0 1 N Y N N N N 8.413 42.543 42.734 5.397 0.915 0.452 O1 AF1 7
AF1 O2 O2 O 0 1 N N N N N N 6.405 44.268 43.074 4.524 -1.798 0.512 O2 AF1 8
AF1 O3 O3 O 0 1 N N N N N N 4.550 44.975 40.943 1.691 -2.184 0.583 O3 AF1 9
AF1 O5 O5 O 0 1 N N N N N N 7.925 42.400 40.327 3.264 1.559 -0.242 O5 AF1 10
AF1 N4 N4 N 0 1 N N N N N N 4.489 43.189 39.016 0.125 -0.283 -0.914 N4 AF1 11
AF1 C1H C1H C 0 1 N N S N N N 3.844 43.592 37.813 -0.964 -0.593 0.022 C1H AF1 12
AF1 C2H C2H C 0 1 N N S N N N 2.338 43.710 38.000 -1.948 -1.555 -0.646 C2H AF1 13
AF1 C3H C3H C 0 1 N N S N N N 1.713 42.351 37.888 -3.198 -1.661 0.237 C3H AF1 14
AF1 C4H C4H C 0 1 N N S N N N 2.041 41.784 36.475 -3.920 -0.312 0.218 C4H AF1 15
AF1 C5H C5H C 0 1 N N N N N N 3.480 42.074 35.932 -2.950 0.798 0.498 C5H AF1 16
AF1 C6H C6H C 0 1 N N N N N N 4.266 43.026 36.568 -1.664 0.677 0.409 C6H AF1 17
AF1 C7H C7H C 0 1 N N N N N N 4.069 41.351 34.695 -3.506 2.136 0.910 C7H AF1 18
AF1 O2H O2H O 0 1 N N N N N N 2.057 44.225 39.292 -2.311 -1.054 -1.934 O2H AF1 19
AF1 O3H O3H O 0 1 N N N N N N 0.313 42.484 38.130 -2.815 -1.982 1.576 O3H AF1 20
AF1 O4H O4H O 0 1 N N N N N N 1.021 41.040 35.761 -4.512 -0.110 -1.067 O4H AF1 21
AF1 O7H O7H O 0 1 N N N N N N 5.426 40.888 34.843 -2.432 3.052 1.130 O7H AF1 22
AF1 H1 H1 H 0 1 N N N N N N 6.771 41.772 41.886 4.451 0.190 -1.235 H1 AF1 23
AF1 H2 H2 H 0 1 N N N N N N 7.341 44.793 41.311 3.399 -0.420 1.566 H2 AF1 24
AF1 H3 H3 H 0 1 N N N N N N 4.931 43.043 41.380 2.511 -1.452 -1.168 H3 AF1 25
AF1 H4 H4 H 0 1 N N N N N N 6.273 44.408 38.834 1.101 0.383 0.825 H4 AF1 26
AF1 H5 H5 H 0 1 N N N N N N 5.866 42.041 39.219 2.256 0.956 -1.942 H5 AF1 27
AF1 H61 H6 H 0 1 N N N N N N 7.089 41.986 37.219 0.937 2.774 0.125 H61 AF1 28
AF1 H62 H6A H 0 1 N N N N N N 7.982 40.875 38.312 1.603 3.284 -1.445 H62 AF1 29
AF1 H6B H6B H 0 1 N N N N N N 6.196 40.750 38.168 0.180 2.217 -1.386 H6B AF1 30
AF1 HO2 HO2 H 0 1 N Y N N N N 7.208 44.331 43.577 5.376 -1.604 0.926 HO2 AF1 31
AF1 HO3 HO3 H 0 1 N Y N N N N 4.347 45.184 41.847 2.240 -2.977 0.654 HO3 AF1 32
AF1 HN4 HN4 H 0 1 N N N N N N 4.540 42.192 38.953 -0.147 0.446 -1.556 HN4 AF1 33
AF1 H1H H1H H 0 1 N N N N N N 4.249 44.601 37.648 -0.550 -1.062 0.915 H1H AF1 34
AF1 H2H H2H H 0 1 N N N N N N 1.933 44.381 37.229 -1.488 -2.538 -0.749 H2H AF1 35
AF1 H3H H3H H 0 1 N N N N N N 2.109 41.641 38.629 -3.859 -2.435 -0.154 H3H AF1 36
AF1 H4H H4H H 0 1 N N N N N N 1.962 41.267 35.507 -4.702 -0.310 0.977 H4H AF1 37
AF1 H6H H6H H 0 1 N N N N N N 5.198 43.340 36.122 -1.057 1.543 0.627 H6H AF1 38
AF1 H7H H7H H 0 1 N N N N N N 3.438 40.473 34.491 -4.153 2.519 0.120 H7H AF1 39
AF1 H7HA H7HA H 0 0 N N N N N N 4.083 42.092 33.882 -4.082 2.024 1.828 H7HA AF1 40
AF1 HO2H HO2H H 0 0 N N N N N N 1.994 43.508 39.912 -2.934 -1.616 -2.414 HO2H AF1 41
AF1 HO3H HO3H H 0 0 N N N N N N 0.154 42.514 39.066 -3.559 -2.064 2.188 HO3H AF1 42
AF1 HO4H HO4H H 0 0 N N N N N N 0.284 40.877 36.339 -4.988 0.728 -1.154 HO4H AF1 43
AF1 HO7H HO7H H 0 0 N N N N N N 5.822 40.786 33.985 -2.717 3.936 1.398 HO7H AF1 44
AF1 HO1 H23 H 0 1 N Y N N N N 9.287 42.526 42.361 5.834 1.669 0.032 HO1 AF1 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AF1 C1 C2 SING N N 1
AF1 C1 O1 SING N N 2
AF1 C1 O5 SING N N 3
AF1 C1 H1 SING N N 4
AF1 C2 C3 SING N N 5
AF1 C2 O2 SING N N 6
AF1 C2 H2 SING N N 7
AF1 C3 C4 SING N N 8
AF1 C3 O3 SING N N 9
AF1 C3 H3 SING N N 10
AF1 C4 C5 SING N N 11
AF1 C4 N4 SING N N 12
AF1 C4 H4 SING N N 13
AF1 C5 C6 SING N N 14
AF1 C5 O5 SING N N 15
AF1 C5 H5 SING N N 16
AF1 C6 H61 SING N N 17
AF1 C6 H62 SING N N 18
AF1 C6 H6B SING N N 19
AF1 O2 HO2 SING N N 20
AF1 O3 HO3 SING N N 21
AF1 N4 C1H SING N N 22
AF1 N4 HN4 SING N N 23
AF1 C1H C2H SING N N 24
AF1 C1H C6H SING N N 25
AF1 C1H H1H SING N N 26
AF1 C2H C3H SING N N 27
AF1 C2H O2H SING N N 28
AF1 C2H H2H SING N N 29
AF1 C3H C4H SING N N 30
AF1 C3H O3H SING N N 31
AF1 C3H H3H SING N N 32
AF1 C4H C5H SING N N 33
AF1 C4H O4H SING N N 34
AF1 C4H H4H SING N N 35
AF1 C5H C6H DOUB N N 36
AF1 C5H C7H SING N N 37
AF1 C6H H6H SING N N 38
AF1 C7H O7H SING N N 39
AF1 C7H H7H SING N N 40
AF1 C7H H7HA SING N N 41
AF1 O2H HO2H SING N N 42
AF1 O3H HO3H SING N N 43
AF1 O4H HO4H SING N N 44
AF1 O7H HO7H SING N N 45
AF1 O1 HO1 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AF1 SMILES ACDLabs 10.04 OC2C(NC1C=C(CO)C(O)C(O)C1O)C(OC(O)C2O)C
AF1 SMILES_CANONICAL CACTVS 3.341 C[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1N[C@H]2C=C(CO)[C@H](O)[C@H](O)[C@H]2O
AF1 SMILES CACTVS 3.341 C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N[CH]2C=C(CO)[CH](O)[CH](O)[CH]2O
AF1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)N[C@H]2C=C(C([C@@H]([C@H]2O)O)O)CO
AF1 SMILES "OpenEye OEToolkits" 1.5.0 CC1C(C(C(C(O1)O)O)O)NC2C=C(C(C(C2O)O)O)CO
AF1 InChI InChI 1.03 InChI=1S/C13H23NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2,4,6-21H,3H2,1H3/t4-,6+,7-,8?,9+,10+,11+,12-,13-/m1/s1
AF1 InChIKey InChI 1.03 RBZIIHWPZWOIDU-MKXIPYFISA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AF1 "SYSTEMATIC NAME" ACDLabs 10.04 4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucopyranose
AF1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3R,4S,5S)-6-methyl-5-[[(1S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)-1-cyclohex-2-enyl]amino]oxane-2,3,4-triol
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AF1 "CARBOHYDRATE ISOMER" D PDB ?
AF1 "CARBOHYDRATE RING" pyranose PDB ?
AF1 "CARBOHYDRATE ANOMER" beta PDB ?
AF1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AF1 'Create component' 1999-07-08 RCSB
AF1 'Modify descriptor' 2011-06-04 RCSB
AF1 'Other modification' 2020-07-03 RCSB
AF1 'Modify synonyms' 2020-07-17 RCSB
AF1 'Modify linking type' 2020-07-17 RCSB
AF1 'Modify atom id' 2020-07-17 RCSB
AF1 'Modify component atom id' 2020-07-17 RCSB
AF1 'Modify leaving atom flag' 2020-07-17 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id AF1
_pdbe_chem_comp_drugbank_details.drugbank_id DB03269
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'4,6-Dideoxy-4-{[4,5,6-trihydroxy-3-(hydroxymethyl)-2-cyclohexen-1-yl]amino}hexopyranose'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
AF1 '4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucose' wwPDB ?
AF1 '4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose' wwPDB ?
AF1 '4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose' wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
AF1 C1 C 12.899 0.142 1
AF1 C2 C 12.899 -1.357 2
AF1 C3 C 11.600 -2.107 3
AF1 C4 C 10.301 -1.357 4
AF1 C5 C 10.301 0.142 5
AF1 C6 C 9.002 0.892 6
AF1 O1 O 14.198 0.892 7
AF1 O2 O 14.198 -2.107 8
AF1 O3 O 11.600 -3.607 9
AF1 O5 O 11.600 0.892 10
AF1 N4 N 9.002 -2.107 11
AF1 C1H C 7.702 -1.357 12
AF1 C2H C 6.404 -2.107 13
AF1 C3H C 5.104 -1.357 14
AF1 C4H C 5.104 0.142 15
AF1 C5H C 6.404 0.892 16
AF1 C6H C 7.702 0.142 17
AF1 C7H C 6.404 2.393 18
AF1 O2H O 6.404 -3.607 19
AF1 O3H O 3.805 -2.107 20
AF1 O4H O 3.805 0.892 21
AF1 O7H O 7.702 3.143 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
AF1 C1 C2 SINGLE NONE 1
AF1 C1 O1 SINGLE BEGINWEDGE 2
AF1 C1 O5 SINGLE NONE 3
AF1 C2 C3 SINGLE NONE 4
AF1 C2 O2 SINGLE BEGINDASH 5
AF1 C3 C4 SINGLE NONE 6
AF1 C3 O3 SINGLE BEGINWEDGE 7
AF1 C4 C5 SINGLE NONE 8
AF1 C4 N4 SINGLE BEGINDASH 9
AF1 C5 C6 SINGLE BEGINWEDGE 10
AF1 C5 O5 SINGLE NONE 11
AF1 C1H N4 SINGLE BEGINDASH 12
AF1 C1H C2H SINGLE NONE 13
AF1 C1H C6H SINGLE NONE 14
AF1 C2H C3H SINGLE NONE 15
AF1 C2H O2H SINGLE BEGINDASH 16
AF1 C3H C4H SINGLE NONE 17
AF1 C3H O3H SINGLE BEGINWEDGE 18
AF1 C4H C5H SINGLE NONE 19
AF1 C4H O4H SINGLE NONE 20
AF1 C5H C6H DOUBLE NONE 21
AF1 C5H C7H SINGLE NONE 22
AF1 C7H O7H SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
AF1 MurckoScaffold S1 scaffold 'C1=C[C@H](N[C@H]2CCCOC2)CCC1' InChI=1S/C11H19NO/c1-2-5-10(6-3-1)12-11-7-4-8-13-9-11/h2,5,10-12H,1,3-4,6-9H2/t10-,11-/m0/s1 OUYINNOHVWIUOB-QWRGUYRKSA-N
AF1 pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
AF1 C1 S1 1
AF1 C2 S1 1
AF1 C3 S1 1
AF1 C4 S1 1
AF1 C5 S1 1
AF1 O5 S1 1
AF1 N4 S1 1
AF1 C1H S1 1
AF1 C2H S1 1
AF1 C3H S1 1
AF1 C4H S1 1
AF1 C5H S1 1
AF1 C6H S1 1
AF1 C4 F1 1
AF1 C5 F1 1
AF1 O5 F1 1
AF1 C1 F1 1
AF1 C2 F1 1
AF1 C3 F1 1
AF1 O1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id AF1
_pdbe_chem_comp_rdkit_properties.exactmw 321.142
_pdbe_chem_comp_rdkit_properties.amw 321.326
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 45
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.846
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.labuteASA 159.619
_pdbe_chem_comp_rdkit_properties.tpsa 162.870
_pdbe_chem_comp_rdkit_properties.CrippenClogP -4.213
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.468
_pdbe_chem_comp_rdkit_properties.chi0v 10.213
_pdbe_chem_comp_rdkit_properties.chi1v 5.284
_pdbe_chem_comp_rdkit_properties.chi2v 2.440
_pdbe_chem_comp_rdkit_properties.chi3v 2.440
_pdbe_chem_comp_rdkit_properties.chi4v 1.411
_pdbe_chem_comp_rdkit_properties.chi0n 33.213
_pdbe_chem_comp_rdkit_properties.chi1n 16.089
_pdbe_chem_comp_rdkit_properties.chi2n 2.440
_pdbe_chem_comp_rdkit_properties.chi3n 2.440
_pdbe_chem_comp_rdkit_properties.chi4n 1.411
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.620
_pdbe_chem_comp_rdkit_properties.kappa1 4.312
_pdbe_chem_comp_rdkit_properties.kappa2 6.870
_pdbe_chem_comp_rdkit_properties.kappa3 3.179
_pdbe_chem_comp_rdkit_properties.Phi 1.346
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
AF1 UniChem DrugBank DB03269
AF1 UniChem PDBe AF1
AF1 UniChem PubChem 131704236
AF1 UniChem 'Probes And Drugs' PD059825
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
AF1 C1 4.063 0.408 -1.026 ETKDGv3 1
AF1 C2 3.467 -1.024 -0.960 ETKDGv3 2
AF1 C3 1.953 -1.024 -0.639 ETKDGv3 3
AF1 C4 1.593 0.218 0.193 ETKDGv3 4
AF1 C5 1.998 1.521 -0.571 ETKDGv3 5
AF1 C6 2.239 2.702 0.380 ETKDGv3 6
AF1 O1 4.616 0.769 0.214 ETKDGv3 7
AF1 O2 3.710 -1.724 -2.155 ETKDGv3 8
AF1 O3 1.617 -2.184 0.077 ETKDGv3 9
AF1 O5 3.105 1.364 -1.458 ETKDGv3 10
AF1 N4 0.183 0.215 0.646 ETKDGv3 11
AF1 C1H -0.856 0.166 -0.414 ETKDGv3 12
AF1 C2H -1.964 1.229 -0.210 ETKDGv3 13
AF1 C3H -2.828 0.870 1.011 ETKDGv3 14
AF1 C4H -3.523 -0.492 0.797 ETKDGv3 15
AF1 C5H -2.619 -1.542 0.169 ETKDGv3 16
AF1 C6H -1.453 -1.220 -0.435 ETKDGv3 17
AF1 C7H -3.110 -2.970 0.078 ETKDGv3 18
AF1 O2H -1.403 2.506 -0.043 ETKDGv3 19
AF1 O3H -3.810 1.855 1.209 ETKDGv3 20
AF1 O4H -3.997 -0.968 2.031 ETKDGv3 21
AF1 O7H -3.281 -3.347 -1.261 ETKDGv3 22
AF1 H1 4.889 0.396 -1.775 ETKDGv3 23
AF1 H2 3.999 -1.571 -0.149 ETKDGv3 24
AF1 H3 1.381 -0.994 -1.594 ETKDGv3 25
AF1 H4 2.216 0.156 1.114 ETKDGv3 26
AF1 H5 1.154 1.832 -1.216 ETKDGv3 27
AF1 H61 2.987 2.452 1.160 ETKDGv3 28
AF1 H62 2.604 3.579 -0.195 ETKDGv3 29
AF1 H6B 1.293 2.991 0.883 ETKDGv3 30
AF1 HO2 3.314 -1.196 -2.897 ETKDGv3 31
AF1 HO3 1.631 -2.935 -0.572 ETKDGv3 32
AF1 HN4 0.045 1.018 1.301 ETKDGv3 33
AF1 H1H -0.427 0.343 -1.421 ETKDGv3 34
AF1 H2H -2.627 1.236 -1.109 ETKDGv3 35
AF1 H3H -2.185 0.795 1.919 ETKDGv3 36
AF1 H4H -4.378 -0.352 0.095 ETKDGv3 37
AF1 H6H -0.876 -2.005 -0.916 ETKDGv3 38
AF1 H7H -2.362 -3.642 0.549 ETKDGv3 39
AF1 H7HA -4.068 -3.105 0.630 ETKDGv3 40
AF1 HO2H -1.113 2.811 -0.942 ETKDGv3 41
AF1 HO3H -3.381 2.597 1.710 ETKDGv3 42
AF1 HO4H -4.827 -0.462 2.236 ETKDGv3 43
AF1 HO7H -4.094 -2.878 -1.585 ETKDGv3 44
AF1 HO1 5.126 1.607 0.062 ETKDGv3 45
#