data_AME
#
_chem_comp.id AME
_chem_comp.name N-ACETYLMETHIONINE
_chem_comp.type "L-peptide NH3 amino terminus"
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H13 N O3 S"
_chem_comp.mon_nstd_parent_comp_id MET
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-05-11
_chem_comp.pdbx_modified_date 2020-07-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 191.248
_chem_comp.one_letter_code M
_chem_comp.three_letter_code AME
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1SJA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AME CT2 CT2 C 0 1 N N N N N N 27.076 46.120 57.048 -2.402 2.835 0.611 CT2 AME 1
AME CT1 CT1 C 0 1 N N N N N N 25.688 45.572 57.270 -1.987 1.579 -0.111 CT1 AME 2
AME OT OT O 0 1 N N N N N N 24.978 45.268 56.223 -2.480 1.306 -1.185 OT AME 3
AME CB CB C 0 1 N N N N N N 23.260 43.949 59.549 0.741 -0.867 0.184 CB AME 4
AME CG CG C 0 1 N N N N N N 23.043 42.994 58.383 1.744 0.202 -0.254 CG AME 5
AME SD SD S 0 1 N N N N N N 23.323 41.240 58.772 3.411 -0.279 0.278 SD AME 6
AME CE CE C 0 1 N N N N N N 23.317 40.535 57.114 4.362 1.129 -0.358 CE AME 7
AME C C C 0 1 N N N N N N 23.545 46.185 60.212 -1.633 -1.570 0.057 C AME 8
AME O O O 0 1 N N N N N N 22.617 45.822 61.055 -2.566 -1.361 0.797 O AME 9
AME OXT OXT O 0 1 N Y N N N N 24.219 47.282 60.432 -1.461 -2.789 -0.478 OXT AME 10
AME N N N 0 1 N N N N N N 25.189 45.384 58.629 -1.068 0.759 0.437 N AME 11
AME CA CA C 0 1 N N S N N N 23.803 45.300 59.052 -0.664 -0.462 -0.265 CA AME 12
AME HT23 3HT2 H 0 0 N N N N N N 27.250 46.253 55.970 -2.316 2.681 1.687 HT23 AME 13
AME HT22 2HT2 H 0 0 N N N N N N 27.173 47.090 57.558 -3.435 3.074 0.359 HT22 AME 14
AME HT21 1HT2 H 0 0 N N N N N N 27.817 45.416 57.454 -1.754 3.658 0.310 HT21 AME 15
AME HB2 2HB H 0 1 N N N N N N 22.301 44.114 60.061 0.763 -0.962 1.269 HB2 AME 16
AME HB1 1HB H 0 1 N N N N N N 23.993 43.505 60.239 1.006 -1.822 -0.270 HB1 AME 17
AME HG2 2HG H 0 1 N N N N N N 22.000 43.101 58.052 1.723 0.297 -1.340 HG2 AME 18
AME HG1 1HG H 0 1 N N N N N N 23.782 43.266 57.614 1.479 1.157 0.200 HG1 AME 19
AME HE3 3HE H 0 1 N N N N N N 23.316 41.346 56.370 4.000 2.049 0.100 HE3 AME 20
AME HE2 2HE H 0 1 N N N N N N 24.214 39.913 56.977 4.243 1.190 -1.439 HE2 AME 21
AME HE1 1HE H 0 1 N N N N N N 22.417 39.916 56.982 5.417 0.994 -0.115 HE1 AME 22
AME HO HO H 0 1 N N N N N N 23.912 47.687 61.235 -2.083 -3.500 -0.271 HO AME 23
AME HN1 1HN H 0 1 N N N N N N 25.879 45.304 59.349 -0.673 0.978 1.296 HN1 AME 24
AME HA HA H 0 1 N N N N N N 23.306 45.559 58.106 -0.664 -0.280 -1.340 HA AME 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AME CT2 CT1 SING N N 1
AME CT2 HT23 SING N N 2
AME CT2 HT22 SING N N 3
AME CT2 HT21 SING N N 4
AME CT1 OT DOUB N N 5
AME CT1 N SING N N 6
AME CB CG SING N N 7
AME CB CA SING N N 8
AME CB HB2 SING N N 9
AME CB HB1 SING N N 10
AME CG SD SING N N 11
AME CG HG2 SING N N 12
AME CG HG1 SING N N 13
AME SD CE SING N N 14
AME CE HE3 SING N N 15
AME CE HE2 SING N N 16
AME CE HE1 SING N N 17
AME C O DOUB N N 18
AME C OXT SING N N 19
AME C CA SING N N 20
AME OXT HO SING N N 21
AME N CA SING N N 22
AME N HN1 SING N N 23
AME CA HA SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AME SMILES ACDLabs 10.04 O=C(NC(C(=O)O)CCSC)C
AME SMILES_CANONICAL CACTVS 3.341 CSCC[C@H](NC(C)=O)C(O)=O
AME SMILES CACTVS 3.341 CSCC[CH](NC(C)=O)C(O)=O
AME SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)N[C@@H](CCSC)C(=O)O
AME SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)NC(CCSC)C(=O)O
AME InChI InChI 1.03 InChI=1S/C7H13NO3S/c1-5(9)8-6(7(10)11)3-4-12-2/h6H,3-4H2,1-2H3,(H,8,9)(H,10,11)/t6-/m0/s1
AME InChIKey InChI 1.03 XUYPXLNMDZIRQH-LURJTMIESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AME "SYSTEMATIC NAME" ACDLabs 10.04 N-acetyl-L-methionine
AME "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-acetamido-4-methylsulfanyl-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AME 'Create component' 2000-05-11 EBI
AME 'Modify descriptor' 2011-06-04 RCSB
AME 'Modify linking type' 2020-07-15 PDBE
#
_pdbe_chem_comp_drugbank_details.comp_id AME
_pdbe_chem_comp_drugbank_details.drugbank_id DB01646
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name N-Acetylmethionine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 65-82-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
AME '(2S)-2-acetamido-4-(methylsulfanyl)butanoic acid' DrugBank ?
AME Acetyl-L-methionine DrugBank ?
AME Acetylmethionine DrugBank ?
AME AcMet DrugBank ?
AME L-(N-Acetyl)methionine DrugBank ?
AME Methionamine DrugBank ?
AME Methionin DrugBank ?
AME N-Ac-Met DrugBank ?
AME N-acetyl-L-methionine DrugBank ?
AME 'Nα-acetyl-L-methionine' DrugBank ?
AME Thiomedon DrugBank ?
AME Follicusan DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id AME
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01646
_pdbe_chem_comp_drugbank_classification.parent 'Methionine and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as methionine and derivatives. These are compounds containing methionine or a derivative thereof resulting from reaction of methionine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
AME DB01646 Rhodopsin Humans P08100 unknown 1
AME DB01646 'o-succinylbenzoate synthase' 'Amycolatopsis sp.' Q44244 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
AME CT2 C 4.299 -0.375 1
AME CT1 C 4.299 1.125 2
AME OT O 3.000 1.875 3
AME CB C 6.897 -0.375 4
AME CG C 8.196 -1.125 5
AME SD S 8.196 -2.625 6
AME CE C 9.495 -3.375 7
AME C C 8.196 1.875 8
AME O O 9.495 1.125 9
AME OXT O 8.196 3.375 10
AME N N 5.598 1.875 11
AME CA C 6.897 1.125 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
AME CT2 CT1 SINGLE NONE 1
AME CT1 OT DOUBLE NONE 2
AME CT1 N SINGLE NONE 3
AME CB CG SINGLE NONE 4
AME CA CB SINGLE BEGINDASH 5
AME CG SD SINGLE NONE 6
AME SD CE SINGLE NONE 7
AME C O DOUBLE NONE 8
AME C OXT SINGLE NONE 9
AME C CA SINGLE NONE 10
AME N CA SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
AME amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
AME peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
AME N F1 1
AME CT1 F1 1
AME OT F1 1
AME CT2 F1 1
AME O F2 1
AME C F2 1
AME CA F2 1
AME N F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id AME
_pdbe_chem_comp_rdkit_properties.exactmw 191.062
_pdbe_chem_comp_rdkit_properties.amw 191.252
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.714
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 94.128
_pdbe_chem_comp_rdkit_properties.tpsa 66.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.329
_pdbe_chem_comp_rdkit_properties.CrippenMR 48.240
_pdbe_chem_comp_rdkit_properties.chi0v 6.397
_pdbe_chem_comp_rdkit_properties.chi1v 3.284
_pdbe_chem_comp_rdkit_properties.chi2v 0.831
_pdbe_chem_comp_rdkit_properties.chi3v 0.831
_pdbe_chem_comp_rdkit_properties.chi4v 0.448
_pdbe_chem_comp_rdkit_properties.chi0n 18.580
_pdbe_chem_comp_rdkit_properties.chi1n 8.823
_pdbe_chem_comp_rdkit_properties.chi2n 0.627
_pdbe_chem_comp_rdkit_properties.chi3n 0.627
_pdbe_chem_comp_rdkit_properties.chi4n 0.300
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.710
_pdbe_chem_comp_rdkit_properties.kappa1 2.204
_pdbe_chem_comp_rdkit_properties.kappa2 5.880
_pdbe_chem_comp_rdkit_properties.kappa3 5.009
_pdbe_chem_comp_rdkit_properties.Phi 1.080
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
AME UniChem DrugBank DB01646
AME UniChem PDBe AME
AME UniChem ChEBI 21557
AME UniChem ZINC ZINC000001529501
AME UniChem eMolecules 713377
AME UniChem fdasrs 9J12WX5B6A
AME UniChem SureChEMBL SCHEMBL109681
AME UniChem HMDB HMDB0011745
AME UniChem NMRShiftDB 60020454
AME UniChem Nikkaji J4.840B
AME UniChem 'EPA CompTox Dashboard' DTXSID00883214
AME UniChem BRENDA 102382
AME UniChem BRENDA 11009
AME UniChem BRENDA 1165
AME UniChem BRENDA 143984
AME UniChem BRENDA 20398
AME UniChem BRENDA 22980
AME UniChem BRENDA 4710
AME UniChem BRENDA 48052
AME UniChem BRENDA 4987
AME UniChem BRENDA 6635
AME UniChem BRENDA 66745
AME UniChem BRENDA 92225
AME UniChem ChemicalBook CB3394487
AME UniChem rxnorm N-ACETYLMETHIONINE
AME UniChem MedChemExpress HY-W012499
AME UniChem 'Probes And Drugs' PD008892
AME UniChem 'PubChem TPHARMA' 15091922
AME UniChem PubChem 448580
AME UniChem Mcule MCULE-5012891970
AME UniChem Mcule MCULE-8710138272
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
AME CT2 -2.778 2.568 -0.396 ETKDGv3 1
AME CT1 -1.543 1.740 -0.540 ETKDGv3 2
AME OT -0.427 2.307 -0.693 ETKDGv3 3
AME CB 0.207 -0.638 0.864 ETKDGv3 4
AME CG 1.547 -1.392 0.870 ETKDGv3 5
AME SD 2.842 -0.501 -0.071 ETKDGv3 6
AME CE 3.375 0.576 1.299 ETKDGv3 7
AME C -0.825 -1.911 -1.051 ETKDGv3 8
AME O -1.645 -2.629 -0.416 ETKDGv3 9
AME OXT -0.267 -2.381 -2.236 ETKDGv3 10
AME N -1.629 0.309 -0.472 ETKDGv3 11
AME CA -0.443 -0.551 -0.533 ETKDGv3 12
AME HT23 -3.569 2.180 -1.070 ETKDGv3 13
AME HT22 -2.571 3.627 -0.659 ETKDGv3 14
AME HT21 -3.135 2.519 0.654 ETKDGv3 15
AME HB2 -0.492 -1.148 1.563 ETKDGv3 16
AME HB1 0.366 0.386 1.261 ETKDGv3 17
AME HG2 1.417 -2.398 0.421 ETKDGv3 18
AME HG1 1.876 -1.549 1.919 ETKDGv3 19
AME HE3 4.197 1.230 0.943 ETKDGv3 20
AME HE2 2.537 1.216 1.641 ETKDGv3 21
AME HE1 3.751 -0.037 2.145 ETKDGv3 22
AME HO -0.510 -3.295 -2.598 ETKDGv3 23
AME HN1 -2.564 -0.119 -0.280 ETKDGv3 24
AME HA 0.282 -0.107 -1.250 ETKDGv3 25
#