data_AMV
#
_chem_comp.id AMV
_chem_comp.name 'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside'
_chem_comp.type D-saccharide
_chem_comp.pdbx_type ATOMS
_chem_comp.formula 'C12 H21 N O8'
_chem_comp.mon_nstd_parent_comp_id NAG
_chem_comp.pdbx_synonyms
;METHYL 2-(ACETYLAMINO)-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE; methyl
2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucoside; methyl
2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-D-glucoside; methyl
2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-glucoside
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-10-25
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 307.297
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AMV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 AMV 'METHYL 2-(ACETYLAMINO)-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE' PDB ?
2 AMV 'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucoside' PDB ?
3 AMV 'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-D-glucoside' PDB ?
4 AMV 'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-glucoside' PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AMV C1 C1 C 0 1 N N R N N N 56.265 -12.523 27.956 4.647 -1.230 0.427 C1 AMV 1
AMV C2 C2 C 0 1 N N R N N N 55.932 -11.125 27.365 3.528 -0.573 1.243 C2 AMV 2
AMV C3 C3 C 0 1 N N R N N N 57.031 -10.637 26.395 3.433 0.926 0.943 C3 AMV 3
AMV C4 C4 C 0 1 N N S N N N 58.344 -10.615 27.190 4.805 1.600 1.001 C4 AMV 4
AMV C5 C5 C 0 1 N N R N N N 58.666 -12.023 27.721 5.826 0.819 0.169 C5 AMV 5
AMV C6 C6 C 0 1 N N N N N N 59.963 -12.086 28.545 7.228 1.403 0.301 C6 AMV 6
AMV C7 C7 C 0 1 N N N N N N 53.658 -10.158 27.081 1.521 -1.860 1.947 C7 AMV 7
AMV C8 C8 C 0 1 N N N N N N 52.418 -10.116 26.172 0.247 -2.454 1.446 C8 AMV 8
AMV C9 C9 C 0 1 N N R N N N 56.918 -8.600 24.934 1.239 1.566 1.491 C9 AMV 9
AMV C10 C10 C 0 1 N N N N N N 55.877 -9.203 23.940 0.353 1.485 2.717 C10 AMV 10
AMV C11 C11 C 0 1 N N N N N N 56.633 -7.115 25.249 1.000 2.853 0.722 C11 AMV 11
AMV O1 O1 O 0 1 N N N N N N 55.296 -12.858 28.944 4.790 -2.579 0.869 O1 AMV 12
AMV O3 O3 O 0 1 N N N N N N 56.905 -9.206 26.247 2.593 1.552 1.914 O3 AMV 13
AMV O4 O4 O 0 1 N N N N N N 59.421 -10.243 26.315 4.701 2.928 0.494 O4 AMV 14
AMV O5 O5 O 0 1 N N N N N N 57.575 -12.501 28.541 5.879 -0.536 0.620 O5 AMV 15
AMV O6 O6 O 0 1 N N N N N N 60.235 -13.443 28.963 8.116 0.627 -0.483 O6 AMV 16
AMV O7 O7 O 0 1 N N N N N N 53.792 -9.403 28.033 1.815 -1.971 3.132 O7 AMV 17
AMV O11 O11 O 0 1 N N N N N N 54.710 -8.837 23.956 0.759 1.460 3.871 O11 AMV 18
AMV N2 N2 N 0 1 N N N N N N 54.586 -11.093 26.761 2.262 -1.219 0.974 N2 AMV 19
AMV C12 C12 C 0 1 N N N N N N 55.188 -14.263 29.132 5.814 -3.251 0.153 C12 AMV 20
AMV OXT OXT O 0 1 N N N N N N 56.287 -10.159 23.049 -0.967 1.465 2.397 OXT AMV 21
AMV H1 H1 H 0 1 N N N N N N 56.245 -13.288 27.145 4.397 -1.251 -0.641 H1 AMV 22
AMV H2 H2 H 0 1 N N N N N N 55.915 -10.400 28.212 3.711 -0.720 2.315 H2 AMV 23
AMV H3 H3 H 0 1 N N N N N N 56.981 -11.251 25.466 2.973 1.105 -0.038 H3 AMV 24
AMV HN2 HA H 0 1 N N N N N N 54.272 -11.771 26.067 1.901 -1.201 0.026 HN2 AMV 25
AMV H4 H4 H 0 1 N N N N N N 58.232 -9.893 28.032 5.136 1.667 2.045 H4 AMV 26
AMV H5 H5 H 0 1 N N N N N N 58.809 -12.668 26.822 5.554 0.839 -0.895 H5 AMV 27
AMV HO4 HB H 0 1 N Y N N N N 60.234 -10.229 26.807 5.563 3.144 0.106 HO4 AMV 28
AMV H61 H6C1 H 0 1 N N N N N N 59.938 -11.384 29.410 7.548 1.373 1.343 H61 AMV 29
AMV H62 H6C2 H 0 1 N N N N N N 60.825 -11.642 27.994 7.238 2.433 -0.057 H62 AMV 30
AMV HO6 H6 H 0 1 N Y N N N N 61.036 -13.482 29.472 8.271 -0.203 -0.001 HO6 AMV 31
AMV H81 H8C1 H 0 1 N N N N N N 51.944 -11.124 26.127 0.197 -3.543 1.610 H81 AMV 32
AMV H82 H8C2 H 0 1 N N N N N N 52.729 -9.996 25.108 -0.639 -2.042 1.957 H82 AMV 33
AMV H83 H8C3 H 0 1 N N N N N N 51.655 -9.347 26.435 0.052 -2.314 0.371 H83 AMV 34
AMV H9 H9 H 0 1 N N N N N N 57.882 -8.775 24.402 1.073 0.688 0.859 H9 AMV 35
AMV H111 H111 H 0 0 N N N N N N 57.328 -6.650 25.987 0.233 3.464 1.211 H111 AMV 36
AMV H112 H112 H 0 0 N N N N N N 55.707 -6.931 25.841 0.637 2.636 -0.288 H112 AMV 37
AMV H113 H113 H 0 0 N N N N N N 56.643 -6.648 24.237 1.911 3.454 0.643 H113 AMV 38
AMV H121 H121 H 0 0 N N N N N N 56.179 -14.716 29.368 5.880 -4.287 0.495 H121 AMV 39
AMV H122 H122 H 0 0 N N N N N N 54.980 -14.785 28.169 6.768 -2.742 0.315 H122 AMV 40
AMV H123 H123 H 0 0 N N N N N N 54.429 -14.525 29.906 5.572 -3.236 -0.912 H123 AMV 41
AMV HX HX H 0 1 N N N N N N 55.549 -10.434 22.517 -1.581 1.428 3.161 HX AMV 42
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AMV C1 C2 SING N N 1
AMV C1 O1 SING N N 2
AMV C1 O5 SING N N 3
AMV C1 H1 SING N N 4
AMV C2 C3 SING N N 5
AMV C2 N2 SING N N 6
AMV C2 H2 SING N N 7
AMV C3 C4 SING N N 8
AMV C3 O3 SING N N 9
AMV C3 H3 SING N N 10
AMV C4 C5 SING N N 11
AMV C4 O4 SING N N 12
AMV C4 H4 SING N N 13
AMV C5 C6 SING N N 14
AMV C5 O5 SING N N 15
AMV C5 H5 SING N N 16
AMV C6 O6 SING N N 17
AMV C6 H61 SING N N 18
AMV C6 H62 SING N N 19
AMV C7 C8 SING N N 20
AMV C7 O7 DOUB N N 21
AMV C7 N2 SING N N 22
AMV C8 H81 SING N N 23
AMV C8 H82 SING N N 24
AMV C8 H83 SING N N 25
AMV C9 C10 SING N N 26
AMV C9 C11 SING N N 27
AMV C9 O3 SING N N 28
AMV C9 H9 SING N N 29
AMV C10 O11 DOUB N N 30
AMV C10 OXT SING N N 31
AMV C11 H111 SING N N 32
AMV C11 H112 SING N N 33
AMV C11 H113 SING N N 34
AMV O1 C12 SING N N 35
AMV O4 HO4 SING N N 36
AMV O6 HO6 SING N N 37
AMV N2 HN2 SING N N 38
AMV C12 H121 SING N N 39
AMV C12 H122 SING N N 40
AMV C12 H123 SING N N 41
AMV OXT HX SING N N 42
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AMV SMILES ACDLabs 10.04 'O=C(O)C(OC1C(O)C(OC(OC)C1NC(=O)C)CO)C'
AMV SMILES_CANONICAL CACTVS 3.341 'CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O[C@H](C)C(O)=O)[C@H]1NC(C)=O'
AMV SMILES CACTVS 3.341 'CO[CH]1O[CH](CO)[CH](O)[CH](O[CH](C)C(O)=O)[CH]1NC(C)=O'
AMV SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'C[C@H](C(=O)O)O[C@@H]1[C@H]([C@@H](O[C@@H]([C@H]1O)CO)OC)NC(=O)C'
AMV SMILES 'OpenEye OEToolkits' 1.5.0 'CC(C(=O)O)OC1C(C(OC(C1O)CO)OC)NC(=O)C'
AMV InChI InChI 1.03 'InChI=1S/C12H21NO8/c1-5(11(17)18)20-10-8(13-6(2)15)12(19-3)21-7(4-14)9(10)16/h5,7-10,12,14,16H,4H2,1-3H3,(H,13,15)(H,17,18)/t5-,7-,8-,9-,10-,12-/m1/s1'
AMV InChIKey InChI 1.03 UXEQYDNCHCKBIL-PKKPQKKZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AMV 'SYSTEMATIC NAME' ACDLabs 10.04 'methyl 2-(acetylamino)-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside'
AMV 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-3-hydroxy-2-(hydroxymethyl)-6-methoxy-oxan-4-yl]oxypropanoic acid'
#
_pdbx_chem_comp_related.comp_id AMV
_pdbx_chem_comp_related.related_comp_id NAG
_pdbx_chem_comp_related.relationship_type 'Carbohydrate core'
_pdbx_chem_comp_related.details ?
#
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
1 AMV C1 NAG C1 'Carbohydrate core'
2 AMV C2 NAG C2 'Carbohydrate core'
3 AMV C3 NAG C3 'Carbohydrate core'
4 AMV C4 NAG C4 'Carbohydrate core'
5 AMV C5 NAG C5 'Carbohydrate core'
6 AMV C6 NAG C6 'Carbohydrate core'
7 AMV C7 NAG C7 'Carbohydrate core'
8 AMV C8 NAG C8 'Carbohydrate core'
9 AMV N2 NAG N2 'Carbohydrate core'
10 AMV O1 NAG O1 'Carbohydrate core'
11 AMV O3 NAG O3 'Carbohydrate core'
12 AMV O4 NAG O4 'Carbohydrate core'
13 AMV O5 NAG O5 'Carbohydrate core'
14 AMV O6 NAG O6 'Carbohydrate core'
15 AMV O7 NAG O7 'Carbohydrate core'
16 AMV H1 NAG H1 'Carbohydrate core'
17 AMV H2 NAG H2 'Carbohydrate core'
18 AMV H3 NAG H3 'Carbohydrate core'
19 AMV H4 NAG H4 'Carbohydrate core'
20 AMV H5 NAG H5 'Carbohydrate core'
21 AMV HO6 NAG HO6 'Carbohydrate core'
22 AMV H61 NAG H61 'Carbohydrate core'
23 AMV H62 NAG H62 'Carbohydrate core'
24 AMV H81 NAG H81 'Carbohydrate core'
25 AMV H82 NAG H82 'Carbohydrate core'
26 AMV H83 NAG H83 'Carbohydrate core'
27 AMV HN2 NAG HN2 'Carbohydrate core'
28 AMV HO4 NAG HO4 'Carbohydrate core'
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AMV 'CARBOHYDRATE ISOMER' D PDB ?
AMV 'CARBOHYDRATE RING' pyranose PDB ?
AMV 'CARBOHYDRATE ANOMER' beta PDB ?
AMV 'CARBOHYDRATE PRIMARY CARBONYL GROUP' aldose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AMV 'Create component' 2006-10-25 RCSB
AMV 'Modify descriptor' 2011-06-04 RCSB
AMV 'Other modification' 2020-07-03 RCSB
AMV 'Modify parent residue' 2020-07-17 RCSB
AMV 'Modify name' 2020-07-17 RCSB
AMV 'Modify synonyms' 2020-07-17 RCSB
AMV 'Modify internal type' 2020-07-17 RCSB
AMV 'Modify linking type' 2020-07-17 RCSB
AMV 'Modify atom id' 2020-07-17 RCSB
AMV 'Modify component atom id' 2020-07-17 RCSB
AMV 'Modify leaving atom flag' 2020-07-17 RCSB
AMV 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id AMV
_pdbx_chem_comp_pcm.modified_residue_id ALA
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Carbohydrate
_pdbx_chem_comp_pcm.position 'Amino-acid backbone'
_pdbx_chem_comp_pcm.polypeptide_position N-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom C10
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom N
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
AMV 'METHYL 2-(ACETYLAMINO)-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE' wwPDB ?
AMV 'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucoside' wwPDB ?
AMV 'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-D-glucoside' wwPDB ?
AMV 'methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-glucoside' wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
AMV C1 C 7.702 2.482 1
AMV C2 C 7.702 0.983 2
AMV C3 C 6.404 0.233 3
AMV C4 C 5.104 0.983 4
AMV C5 C 5.104 2.482 5
AMV C6 C 3.805 3.232 6
AMV C7 C 10.301 0.983 7
AMV C8 C 10.301 2.482 8
AMV C9 C 5.104 -2.018 9
AMV C10 C 5.104 -3.518 10
AMV C11 C 3.805 -1.268 11
AMV O1 O 9.002 3.232 12
AMV O3 O 6.404 -1.268 13
AMV O4 O 3.805 0.233 14
AMV O5 O 6.404 3.232 15
AMV O6 O 3.805 4.732 16
AMV O7 O 11.600 0.233 17
AMV O11 O 3.805 -4.268 18
AMV N2 N 9.002 0.233 19
AMV C12 C 9.002 4.732 20
AMV OXT O 6.404 -4.268 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
AMV C1 C2 SINGLE NONE 1
AMV C1 O1 SINGLE BEGINWEDGE 2
AMV C1 O5 SINGLE NONE 3
AMV C2 C3 SINGLE NONE 4
AMV C2 N2 SINGLE BEGINDASH 5
AMV C3 C4 SINGLE NONE 6
AMV C3 O3 SINGLE BEGINWEDGE 7
AMV C4 C5 SINGLE NONE 8
AMV C4 O4 SINGLE BEGINDASH 9
AMV C5 C6 SINGLE BEGINWEDGE 10
AMV C5 O5 SINGLE NONE 11
AMV C6 O6 SINGLE NONE 12
AMV C7 C8 SINGLE NONE 13
AMV C7 O7 DOUBLE NONE 14
AMV C7 N2 SINGLE NONE 15
AMV C9 C10 SINGLE NONE 16
AMV C9 C11 SINGLE BEGINWEDGE 17
AMV C9 O3 SINGLE NONE 18
AMV C10 O11 DOUBLE NONE 19
AMV C10 OXT SINGLE NONE 20
AMV O1 C12 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
AMV MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
AMV amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
AMV pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
AMV C1 S1 1
AMV C2 S1 1
AMV C3 S1 1
AMV C4 S1 1
AMV C5 S1 1
AMV O5 S1 1
AMV N2 F1 1
AMV C7 F1 1
AMV O7 F1 1
AMV C8 F1 1
AMV C4 F2 1
AMV C5 F2 1
AMV O5 F2 1
AMV C1 F2 1
AMV C2 F2 1
AMV C3 F2 1
AMV O1 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id AMV
_pdbe_chem_comp_rdkit_properties.exactmw 307.127
_pdbe_chem_comp_rdkit_properties.amw 307.299
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 42
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.833
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 151.166
_pdbe_chem_comp_rdkit_properties.tpsa 134.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.926
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.338
_pdbe_chem_comp_rdkit_properties.chi0v 9.713
_pdbe_chem_comp_rdkit_properties.chi1v 4.693
_pdbe_chem_comp_rdkit_properties.chi2v 1.804
_pdbe_chem_comp_rdkit_properties.chi3v 1.804
_pdbe_chem_comp_rdkit_properties.chi4v 1.063
_pdbe_chem_comp_rdkit_properties.chi0n 30.713
_pdbe_chem_comp_rdkit_properties.chi1n 14.865
_pdbe_chem_comp_rdkit_properties.chi2n 1.804
_pdbe_chem_comp_rdkit_properties.chi3n 1.804
_pdbe_chem_comp_rdkit_properties.chi4n 1.063
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.260
_pdbe_chem_comp_rdkit_properties.kappa1 4.177
_pdbe_chem_comp_rdkit_properties.kappa2 7.664
_pdbe_chem_comp_rdkit_properties.kappa3 4.351
_pdbe_chem_comp_rdkit_properties.Phi 1.524
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
AMV UniChem ZINC ZINC000058650293
AMV UniChem 'PubChem TPHARMA' 57302926
AMV UniChem PubChem 25194150
AMV UniChem Nikkaji J2.682.555E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
AMV C1 -0.973 0.001 1.105 ETKDGv3 1
AMV C2 -0.072 0.900 0.197 ETKDGv3 2
AMV C3 0.684 0.051 -0.857 ETKDGv3 3
AMV C4 -0.287 -0.870 -1.644 ETKDGv3 4
AMV C5 -1.511 -1.259 -0.781 ETKDGv3 5
AMV C6 -2.071 -2.625 -1.202 ETKDGv3 6
AMV C7 -1.415 3.057 0.280 ETKDGv3 7
AMV C8 -2.206 4.105 -0.433 ETKDGv3 8
AMV C9 2.910 -0.163 -0.108 ETKDGv3 9
AMV C10 3.561 -0.597 1.170 ETKDGv3 10
AMV C11 3.771 -0.604 -1.294 ETKDGv3 11
AMV O1 -0.362 -0.092 2.379 ETKDGv3 12
AMV O3 1.632 -0.773 -0.191 ETKDGv3 13
AMV O4 -0.733 -0.236 -2.816 ETKDGv3 14
AMV O5 -1.133 -1.312 0.580 ETKDGv3 15
AMV O6 -3.254 -2.905 -0.503 ETKDGv3 16
AMV O7 -1.208 3.167 1.519 ETKDGv3 17
AMV O11 4.228 0.228 1.851 ETKDGv3 18
AMV N2 -0.872 1.949 -0.453 ETKDGv3 19
AMV C12 -1.294 -0.538 3.340 ETKDGv3 20
AMV OXT 3.460 -1.920 1.589 ETKDGv3 21
AMV H1 -1.980 0.478 1.195 ETKDGv3 22
AMV H2 0.693 1.410 0.825 ETKDGv3 23
AMV H3 1.175 0.734 -1.593 ETKDGv3 24
AMV HN2 -1.004 1.940 -1.489 ETKDGv3 25
AMV H4 0.271 -1.796 -1.926 ETKDGv3 26
AMV H5 -2.329 -0.514 -0.934 ETKDGv3 27
AMV HO4 0.016 -0.273 -3.467 ETKDGv3 28
AMV H61 -1.317 -3.427 -1.028 ETKDGv3 29
AMV H62 -2.304 -2.608 -2.289 ETKDGv3 30
AMV HO6 -2.985 -3.226 0.397 ETKDGv3 31
AMV H81 -2.704 4.780 0.295 ETKDGv3 32
AMV H82 -1.529 4.703 -1.078 ETKDGv3 33
AMV H83 -2.982 3.623 -1.064 ETKDGv3 34
AMV H9 2.856 0.952 -0.097 ETKDGv3 35
AMV H111 3.312 -0.264 -2.246 ETKDGv3 36
AMV H112 3.859 -1.711 -1.320 ETKDGv3 37
AMV H113 4.786 -0.160 -1.218 ETKDGv3 38
AMV H121 -0.767 -0.674 4.306 ETKDGv3 39
AMV H122 -2.094 0.219 3.498 ETKDGv3 40
AMV H123 -1.737 -1.519 3.058 ETKDGv3 41
AMV HX 3.905 -2.230 2.445 ETKDGv3 42
#