data_AQC
#
_chem_comp.id AQC
_chem_comp.name 9,10-dioxo-9,10-dihydroanthracene-2-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H9 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-06-16
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 251.237
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AQC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2KK5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AQC C4A C4A C 0 1 Y N N N N N 3.078 4.876 -5.634 0.171 -1.028 -0.103 C4A AQC 1
AQC C1A C1A C 0 1 Y N N N N N 4.125 4.796 -4.689 0.415 0.359 -0.137 C1A AQC 2
AQC C9 C9 C 0 1 N N N N N N 4.142 5.677 -3.479 -0.721 1.299 -0.258 C9 AQC 3
AQC C8A C8A C 0 1 Y N N N N N 3.007 6.638 -3.317 -2.097 0.803 -0.035 C8A AQC 4
AQC C5A C5A C 0 1 Y N N N N N 1.964 6.710 -4.265 -2.341 -0.583 -0.002 C5A AQC 5
AQC C10 C10 C 0 1 N N N N N N 1.948 5.836 -5.470 -1.220 -1.529 -0.190 C10 AQC 6
AQC C4 C4 C 0 1 Y N N N N N 3.092 4.038 -6.752 1.234 -1.916 0.018 C4 AQC 7
AQC C3 C3 C 0 1 Y N N N N N 4.132 3.128 -6.932 2.530 -1.439 0.099 C3 AQC 8
AQC C2 C2 C 0 1 Y N N N N N 5.181 3.042 -5.993 2.778 -0.067 0.060 C2 AQC 9
AQC C1 C1 C 0 1 Y N N N N N 5.163 3.882 -4.879 1.717 0.835 -0.056 C1 AQC 10
AQC C8 C8 C 0 1 Y N N N N N 2.980 7.480 -2.200 -3.150 1.694 0.144 C8 AQC 11
AQC C5 C5 C 0 1 Y N N N N N 0.920 7.621 -4.075 -3.635 -1.050 0.207 C5 AQC 12
AQC C7 C7 C 0 1 Y N N N N N 1.932 8.381 -2.026 -4.431 1.212 0.352 C7 AQC 13
AQC C6 C6 C 0 1 Y N N N N N 0.902 8.449 -2.964 -4.672 -0.150 0.383 C6 AQC 14
AQC C1L C1L C 0 1 N N N N N N 6.349 2.092 -6.096 4.167 0.435 0.147 C1L AQC 15
AQC "N2'" "N2'" N 0 1 N N N N N N 6.390 1.261 -7.172 5.191 -0.433 0.264 "N2'" AQC 16
AQC O9 O9 O 0 1 N N N N N N 5.043 5.613 -2.660 -0.526 2.465 -0.538 O9 AQC 17
AQC O10 O10 O 0 1 N N N N N N 1.053 5.897 -6.290 -1.438 -2.703 -0.413 O10 AQC 18
AQC O1L O1L O 0 1 N N N N N N 7.221 2.072 -5.244 4.385 1.630 0.113 O1L AQC 19
AQC H4 H4 H 0 1 N N N N N N 2.295 4.096 -7.478 1.048 -2.980 0.050 H4 AQC 20
AQC H3 H3 H 0 1 N N N N N N 4.135 2.483 -7.798 3.353 -2.131 0.193 H3 AQC 21
AQC H1 H1 H 0 1 N N N N N N 5.962 3.824 -4.155 1.910 1.897 -0.087 H1 AQC 22
AQC H8 H8 H 0 1 N N N N N N 3.774 7.431 -1.470 -2.969 2.758 0.121 H8 AQC 23
AQC H5 H5 H 0 1 N N N N N N 0.122 7.680 -4.800 -3.829 -2.112 0.232 H5 AQC 24
AQC H7 H7 H 0 1 N N N N N N 1.917 9.029 -1.162 -5.249 1.904 0.490 H7 AQC 25
AQC H6 H6 H 0 1 N N N N N N 0.090 9.147 -2.824 -5.676 -0.513 0.545 H6 AQC 26
AQC "HN2'" "HN2'" H 0 0 N N N N N N 7.216 0.703 -7.092 6.102 -0.105 0.321 "HN2'" AQC 27
AQC HN2A HN2A H 0 0 N N N N N N 5.716 1.216 -7.910 5.017 -1.387 0.291 HN2A AQC 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AQC C4 C4A DOUB Y N 1
AQC C4A C10 SING N N 2
AQC C4A C1A SING Y N 3
AQC C1 C1A DOUB Y N 4
AQC C1A C9 SING N N 5
AQC C9 C8A SING N N 6
AQC C9 O9 DOUB N N 7
AQC C5A C8A DOUB Y N 8
AQC C8A C8 SING Y N 9
AQC C10 C5A SING N N 10
AQC C5A C5 SING Y N 11
AQC O10 C10 DOUB N N 12
AQC H4 C4 SING N N 13
AQC C3 C4 SING Y N 14
AQC H3 C3 SING N N 15
AQC C3 C2 DOUB Y N 16
AQC C1L C2 SING N N 17
AQC C2 C1 SING Y N 18
AQC C1 H1 SING N N 19
AQC C8 C7 DOUB Y N 20
AQC C8 H8 SING N N 21
AQC H5 C5 SING N N 22
AQC C5 C6 DOUB Y N 23
AQC C6 C7 SING Y N 24
AQC C7 H7 SING N N 25
AQC C6 H6 SING N N 26
AQC "N2'" C1L SING N N 27
AQC C1L O1L DOUB N N 28
AQC "HN2'" "N2'" SING N N 29
AQC "N2'" HN2A SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AQC SMILES ACDLabs 10.04 O=C(N)c3ccc2C(=O)c1c(cccc1)C(=O)c2c3
AQC SMILES_CANONICAL CACTVS 3.341 NC(=O)c1ccc2C(=O)c3ccccc3C(=O)c2c1
AQC SMILES CACTVS 3.341 NC(=O)c1ccc2C(=O)c3ccccc3C(=O)c2c1
AQC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)C(=O)c3ccc(cc3C2=O)C(=O)N
AQC SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)C(=O)c3ccc(cc3C2=O)C(=O)N
AQC InChI InChI 1.03 InChI=1S/C15H9NO3/c16-15(19)8-5-6-11-12(7-8)14(18)10-4-2-1-3-9(10)13(11)17/h1-7H,(H2,16,19)
AQC InChIKey InChI 1.03 RMBCGKBEXUZXEN-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AQC "SYSTEMATIC NAME" ACDLabs 10.04 9,10-dioxo-9,10-dihydroanthracene-2-carboxamide
AQC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 9,10-dioxoanthracene-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AQC 'Create component' 2009-06-16 RCSB
AQC 'Modify aromatic_flag' 2011-06-04 RCSB
AQC 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
AQC C4A C 8.298 -0.768 1
AQC C1A C 8.298 0.732 2
AQC C9 C 6.999 1.482 3
AQC C8A C 5.700 0.732 4
AQC C5A C 5.700 -0.768 5
AQC C10 C 6.999 -1.518 6
AQC C4 C 9.639 -1.570 7
AQC C3 C 10.998 -0.799 8
AQC C2 C 10.998 0.763 9
AQC C1 C 9.639 1.534 10
AQC C8 C 4.359 1.534 11
AQC C5 C 4.359 -1.570 12
AQC C7 C 3.000 0.763 13
AQC C6 C 3.000 -0.799 14
AQC C1L C 12.294 1.518 15
AQC "N2'" N 12.288 3.018 16
AQC O9 O 6.999 2.982 17
AQC O10 O 6.999 -3.018 18
AQC O1L O 13.596 0.773 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
AQC C4 C4A DOUBLE NONE 1
AQC C4A C10 SINGLE NONE 2
AQC C4A C1A SINGLE NONE 3
AQC C1 C1A DOUBLE NONE 4
AQC C1A C9 SINGLE NONE 5
AQC C9 C8A SINGLE NONE 6
AQC C9 O9 DOUBLE NONE 7
AQC C5A C8A DOUBLE NONE 8
AQC C8A C8 SINGLE NONE 9
AQC C10 C5A SINGLE NONE 10
AQC C5A C5 SINGLE NONE 11
AQC O10 C10 DOUBLE NONE 12
AQC C3 C4 SINGLE NONE 13
AQC C3 C2 DOUBLE NONE 14
AQC C1L C2 SINGLE NONE 15
AQC C2 C1 SINGLE NONE 16
AQC C8 C7 DOUBLE NONE 17
AQC C5 C6 DOUBLE NONE 18
AQC C6 C7 SINGLE NONE 19
AQC "N2'" C1L SINGLE NONE 20
AQC C1L O1L DOUBLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
AQC MurckoScaffold S1 scaffold O=C1c2ccccc2C(=O)c2ccccc21 InChI=1S/C14H8O2/c15-13-9-5-1-2-6-10(9)14(16)12-8-4-3-7-11(12)13/h1-8H RZVHIXYEVGDQDX-UHFFFAOYSA-N
AQC amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
AQC phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
AQC C4A S1 1
AQC C1A S1 1
AQC C9 S1 1
AQC C8A S1 1
AQC C5A S1 1
AQC C10 S1 1
AQC C4 S1 1
AQC C3 S1 1
AQC C2 S1 1
AQC C1 S1 1
AQC C8 S1 1
AQC C5 S1 1
AQC C7 S1 1
AQC C6 S1 1
AQC O9 S1 1
AQC O10 S1 1
AQC "N2'" F1 1
AQC C1L F1 1
AQC O1L F1 1
AQC C2 F1 1
AQC C4A F2 1
AQC C4 F2 1
AQC C3 F2 1
AQC C2 F2 1
AQC C1 F2 1
AQC C1A F2 1
AQC C8A F2 2
AQC C5A F2 2
AQC C5 F2 2
AQC C6 F2 2
AQC C7 F2 2
AQC C8 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id AQC
_pdbe_chem_comp_rdkit_properties.exactmw 251.058
_pdbe_chem_comp_rdkit_properties.amw 251.241
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 121.163
_pdbe_chem_comp_rdkit_properties.tpsa 77.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.287
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.937
_pdbe_chem_comp_rdkit_properties.chi0v 9.172
_pdbe_chem_comp_rdkit_properties.chi1v 5.086
_pdbe_chem_comp_rdkit_properties.chi2v 2.622
_pdbe_chem_comp_rdkit_properties.chi3v 2.622
_pdbe_chem_comp_rdkit_properties.chi4v 1.757
_pdbe_chem_comp_rdkit_properties.chi0n 18.172
_pdbe_chem_comp_rdkit_properties.chi1n 9.480
_pdbe_chem_comp_rdkit_properties.chi2n 2.622
_pdbe_chem_comp_rdkit_properties.chi3n 2.622
_pdbe_chem_comp_rdkit_properties.chi4n 1.757
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.750
_pdbe_chem_comp_rdkit_properties.kappa1 5.089
_pdbe_chem_comp_rdkit_properties.kappa2 3.880
_pdbe_chem_comp_rdkit_properties.kappa3 1.573
_pdbe_chem_comp_rdkit_properties.Phi 1.039
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
AQC UniChem PDBe AQC
AQC UniChem ZINC ZINC000005002669
AQC UniChem eMolecules 1158709
AQC UniChem 'EPA CompTox Dashboard' DTXSID00389029
AQC UniChem Nikkaji J2.556.103A
AQC UniChem SureChEMBL SCHEMBL3788634
AQC UniChem PubChem 3089797
AQC UniChem Mcule MCULE-7102291209
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
AQC C4A -0.225 0.552 0.816 ETKDGv3 1
AQC C1A -0.504 -0.138 -0.465 ETKDGv3 2
AQC C9 0.629 -0.726 -1.212 ETKDGv3 3
AQC C8A 2.010 -0.620 -0.679 ETKDGv3 4
AQC C5A 2.265 0.013 0.495 ETKDGv3 5
AQC C10 1.173 0.624 1.293 ETKDGv3 6
AQC C4 -1.238 1.098 1.512 ETKDGv3 7
AQC C3 -2.623 1.010 1.009 ETKDGv3 8
AQC C2 -2.892 0.376 -0.147 ETKDGv3 9
AQC C1 -1.769 -0.217 -0.919 ETKDGv3 10
AQC C8 3.138 -1.217 -1.444 ETKDGv3 11
AQC C5 3.666 0.094 0.990 ETKDGv3 12
AQC C7 4.391 -1.135 -0.984 ETKDGv3 13
AQC C6 4.667 -0.449 0.289 ETKDGv3 14
AQC C1L -4.273 0.285 -0.681 ETKDGv3 15
AQC "N2'" -5.417 0.399 0.170 ETKDGv3 16
AQC O9 0.425 -1.320 -2.307 ETKDGv3 17
AQC O10 1.442 1.205 2.380 ETKDGv3 18
AQC O1L -4.449 0.086 -1.913 ETKDGv3 19
AQC H4 -1.059 1.612 2.448 ETKDGv3 20
AQC H3 -3.402 1.494 1.582 ETKDGv3 21
AQC H1 -1.982 -0.724 -1.852 ETKDGv3 22
AQC H8 2.955 -1.726 -2.382 ETKDGv3 23
AQC H5 3.889 0.594 1.924 ETKDGv3 24
AQC H7 5.205 -1.572 -1.547 ETKDGv3 25
AQC H6 5.684 -0.386 0.656 ETKDGv3 26
AQC "HN2'" -5.332 0.402 1.210 ETKDGv3 27
AQC HN2A -6.375 0.389 -0.244 ETKDGv3 28
#