data_AQQ
#
_chem_comp.id AQQ
_chem_comp.name "(2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H16 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-08-22
_chem_comp.pdbx_modified_date 2017-12-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 204.224
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AQQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5OTA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AQQ O O1 O 0 1 N N N N N N 5.884 19.279 -12.250 2.594 -1.055 1.487 O AQQ 1
AQQ C C1 C 0 1 N N N N N N 5.738 20.479 -11.963 2.711 -0.990 0.286 C AQQ 2
AQQ CA C2 C 0 1 N N R N N N 4.318 21.035 -11.690 1.562 -0.503 -0.558 CA AQQ 3
AQQ CB C3 C 0 1 N N N N N N 3.797 21.770 -12.924 1.152 -1.600 -1.543 CB AQQ 4
AQQ N N1 N 0 1 N N N N N N 3.344 19.998 -11.284 0.423 -0.173 0.309 N AQQ 5
AQQ CAN C4 C 0 1 N N S N N N 3.608 19.244 -10.091 -0.456 0.816 -0.330 CAN AQQ 6
AQQ CAL C5 C 0 1 N N N N N N 2.476 18.221 -9.930 0.068 2.203 -0.059 CAL AQQ 7
AQQ OAF O2 O 0 1 N N N N N N 2.590 17.211 -9.174 -0.579 3.272 -0.548 OAF AQQ 8
AQQ OAD O3 O 0 1 N N N N N N 1.378 18.402 -10.531 1.071 2.352 0.598 OAD AQQ 9
AQQ CAI C6 C 0 1 N N N N N N 3.619 20.204 -8.885 -1.870 0.685 0.240 CAI AQQ 10
AQQ CAH C7 C 0 1 N N N N N N 4.238 19.725 -7.577 -2.450 -0.678 -0.142 CAH AQQ 11
AQQ CAG C8 C 0 1 N N N N N N 4.035 20.816 -6.539 -3.864 -0.809 0.427 CAG AQQ 12
AQQ NAB N2 N 0 1 N N N N N N 4.315 20.351 -5.177 -4.421 -2.118 0.060 NAB AQQ 13
AQQ OXT O4 O 0 1 N N N N N N 6.765 21.222 -11.899 3.868 -1.345 -0.295 OXT AQQ 14
AQQ H1 H1 H 0 1 N N N N N N 4.402 21.768 -10.874 1.867 0.386 -1.110 H1 AQQ 15
AQQ H2 H2 H 0 1 N N N N N N 2.789 22.161 -12.720 1.997 -1.844 -2.187 H2 AQQ 16
AQQ H3 H3 H 0 1 N N N N N N 4.472 22.604 -13.166 0.847 -2.488 -0.991 H3 AQQ 17
AQQ H4 H4 H 0 1 N N N N N N 3.755 21.074 -13.775 0.321 -1.248 -2.154 H4 AQQ 18
AQQ H5 H5 H 0 1 N N N N N N 2.463 20.453 -11.157 -0.092 -1.004 0.562 H5 AQQ 19
AQQ H7 H7 H 0 1 N N N N N N 4.574 18.722 -10.157 -0.480 0.640 -1.405 H7 AQQ 20
AQQ H8 H8 H 0 1 N N N N N N 1.778 16.718 -9.179 -0.204 4.141 -0.348 H8 AQQ 21
AQQ H9 H9 H 0 1 N N N N N N 4.169 21.105 -9.193 -1.834 0.773 1.326 H9 AQQ 22
AQQ H10 H10 H 0 1 N N N N N N 2.573 20.468 -8.671 -2.501 1.475 -0.168 H10 AQQ 23
AQQ H11 H11 H 0 1 N N N N N N 3.745 18.799 -7.247 -2.486 -0.766 -1.228 H11 AQQ 24
AQQ H12 H12 H 0 1 N N N N N N 5.313 19.538 -7.718 -1.819 -1.469 0.265 H12 AQQ 25
AQQ H13 H13 H 0 1 N N N N N N 4.708 21.654 -6.771 -3.828 -0.721 1.513 H13 AQQ 26
AQQ H14 H14 H 0 1 N N N N N N 2.991 21.160 -6.587 -4.494 -0.019 0.020 H14 AQQ 27
AQQ H15 H15 H 0 1 N N N N N N 4.168 21.101 -4.532 -3.820 -2.866 0.371 H15 AQQ 28
AQQ H16 H16 H 0 1 N N N N N N 3.703 19.593 -4.952 -5.355 -2.229 0.425 H16 AQQ 29
AQQ H18 H18 H 0 1 N N N N N N 7.540 20.709 -12.094 4.577 -1.647 0.288 H18 AQQ 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AQQ CB CA SING N N 1
AQQ O C DOUB N N 2
AQQ C OXT SING N N 3
AQQ C CA SING N N 4
AQQ CA N SING N N 5
AQQ N CAN SING N N 6
AQQ OAD CAL DOUB N N 7
AQQ CAN CAL SING N N 8
AQQ CAN CAI SING N N 9
AQQ CAL OAF SING N N 10
AQQ CAI CAH SING N N 11
AQQ CAH CAG SING N N 12
AQQ CAG NAB SING N N 13
AQQ CA H1 SING N N 14
AQQ CB H2 SING N N 15
AQQ CB H3 SING N N 16
AQQ CB H4 SING N N 17
AQQ N H5 SING N N 18
AQQ CAN H7 SING N N 19
AQQ OAF H8 SING N N 20
AQQ CAI H9 SING N N 21
AQQ CAI H10 SING N N 22
AQQ CAH H11 SING N N 23
AQQ CAH H12 SING N N 24
AQQ CAG H13 SING N N 25
AQQ CAG H14 SING N N 26
AQQ NAB H15 SING N N 27
AQQ NAB H16 SING N N 28
AQQ OXT H18 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AQQ InChI InChI 1.03 InChI=1S/C8H16N2O4/c1-5(7(11)12)10-6(8(13)14)3-2-4-9/h5-6,10H,2-4,9H2,1H3,(H,11,12)(H,13,14)/t5-,6+/m1/s1
AQQ InChIKey InChI 1.03 ZQKXJZFWRBQTIO-RITPCOANSA-N
AQQ SMILES_CANONICAL CACTVS 3.385 C[C@@H](N[C@@H](CCCN)C(O)=O)C(O)=O
AQQ SMILES CACTVS 3.385 C[CH](N[CH](CCCN)C(O)=O)C(O)=O
AQQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@H](C(=O)O)N[C@@H](CCCN)C(=O)O
AQQ SMILES "OpenEye OEToolkits" 2.0.6 CC(C(=O)O)NC(CCCN)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id AQQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"(2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AQQ 'Create component' 2017-08-22 EBI
AQQ 'Initial release' 2017-12-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
AQQ O O 11.600 1.590 1
AQQ C C 10.301 2.340 2
AQQ CA C 9.002 1.590 3
AQQ CB C 9.002 0.090 4
AQQ N N 7.702 2.340 5
AQQ CAN C 6.404 1.590 6
AQQ CAL C 5.104 2.340 7
AQQ OAF O 3.805 1.590 8
AQQ OAD O 5.104 3.840 9
AQQ CAI C 6.404 0.090 10
AQQ CAH C 5.104 -0.660 11
AQQ CAG C 5.104 -2.160 12
AQQ NAB N 3.805 -2.910 13
AQQ OXT O 10.301 3.840 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
AQQ CA CB SINGLE BEGINWEDGE 1
AQQ O C DOUBLE NONE 2
AQQ C OXT SINGLE NONE 3
AQQ C CA SINGLE NONE 4
AQQ CA N SINGLE NONE 5
AQQ N CAN SINGLE NONE 6
AQQ OAD CAL DOUBLE NONE 7
AQQ CAN CAL SINGLE NONE 8
AQQ CAN CAI SINGLE BEGINWEDGE 9
AQQ CAL OAF SINGLE NONE 10
AQQ CAI CAH SINGLE NONE 11
AQQ CAH CAG SINGLE NONE 12
AQQ CAG NAB SINGLE NONE 13
#
_pdbe_chem_comp_substructure.comp_id AQQ
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
AQQ O F1 1
AQQ C F1 1
AQQ CA F1 1
AQQ N F1 1
AQQ OAD F1 2
AQQ CAL F1 2
AQQ CAN F1 2
AQQ N F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id AQQ
_pdbe_chem_comp_rdkit_properties.exactmw 204.111
_pdbe_chem_comp_rdkit_properties.amw 204.226
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.750
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 104.922
_pdbe_chem_comp_rdkit_properties.tpsa 112.650
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.759
_pdbe_chem_comp_rdkit_properties.CrippenMR 49.946
_pdbe_chem_comp_rdkit_properties.chi0v 6.527
_pdbe_chem_comp_rdkit_properties.chi1v 2.987
_pdbe_chem_comp_rdkit_properties.chi2v 0.847
_pdbe_chem_comp_rdkit_properties.chi3v 0.847
_pdbe_chem_comp_rdkit_properties.chi4v 0.369
_pdbe_chem_comp_rdkit_properties.chi0n 22.527
_pdbe_chem_comp_rdkit_properties.chi1n 10.645
_pdbe_chem_comp_rdkit_properties.chi2n 0.847
_pdbe_chem_comp_rdkit_properties.chi3n 0.847
_pdbe_chem_comp_rdkit_properties.chi4n 0.369
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.140
_pdbe_chem_comp_rdkit_properties.kappa1 2.330
_pdbe_chem_comp_rdkit_properties.kappa2 6.334
_pdbe_chem_comp_rdkit_properties.kappa3 4.781
_pdbe_chem_comp_rdkit_properties.Phi 1.054
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
AQQ UniChem PDBe AQQ
AQQ UniChem ZINC ZINC000002522560
AQQ UniChem SureChEMBL SCHEMBL8254457
AQQ UniChem ACTor 20197-09-5
AQQ UniChem Nikkaji J15.877A
AQQ UniChem BRENDA 44553
AQQ UniChem BRENDA 94406
AQQ UniChem PubChem 13748388
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
AQQ O -3.870 0.635 1.707 ETKDGv3 1
AQQ C -3.737 0.384 0.478 ETKDGv3 2
AQQ CA -2.463 0.747 -0.238 ETKDGv3 3
AQQ CB -2.359 2.274 -0.331 ETKDGv3 4
AQQ N -1.293 0.198 0.479 ETKDGv3 5
AQQ CAN -0.130 -0.025 -0.403 ETKDGv3 6
AQQ CAL -0.331 -1.248 -1.266 ETKDGv3 7
AQQ OAF -0.492 -2.501 -0.681 ETKDGv3 8
AQQ OAD -0.354 -1.136 -2.521 ETKDGv3 9
AQQ CAI 1.135 -0.166 0.463 ETKDGv3 10
AQQ CAH 2.420 -0.198 -0.378 ETKDGv3 11
AQQ CAG 3.661 -0.287 0.514 ETKDGv3 12
AQQ NAB 4.869 -0.296 -0.304 ETKDGv3 13
AQQ OXT -4.779 -0.215 -0.223 ETKDGv3 14
AQQ H1 -2.526 0.334 -1.270 ETKDGv3 15
AQQ H2 -2.243 2.718 0.681 ETKDGv3 16
AQQ H3 -3.273 2.693 -0.806 ETKDGv3 17
AQQ H4 -1.490 2.573 -0.952 ETKDGv3 18
AQQ H5 -1.542 -0.710 0.942 ETKDGv3 19
AQQ H7 0.017 0.861 -1.059 ETKDGv3 20
AQQ H8 -0.627 -3.327 -1.250 ETKDGv3 21
AQQ H9 1.185 0.702 1.157 ETKDGv3 22
AQQ H10 1.068 -1.089 1.082 ETKDGv3 23
AQQ H11 2.483 0.724 -0.996 ETKDGv3 24
AQQ H12 2.402 -1.077 -1.059 ETKDGv3 25
AQQ H13 3.690 0.593 1.194 ETKDGv3 26
AQQ H14 3.618 -1.211 1.134 ETKDGv3 27
AQQ H15 4.914 -1.210 -0.812 ETKDGv3 28
AQQ H16 5.691 -0.278 0.343 ETKDGv3 29
AQQ H18 -5.645 -0.460 0.242 ETKDGv3 30
#