data_ARX
#
_chem_comp.id ARX
_chem_comp.name
(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-N-(6-{[(1R)-4-carbamimidamido-1-{[(1R)-4-carbamimidamido-1-carbamoylbutyl]carbamoyl}butyl]amino}-6-oxohexyl)-3,4-dihydroxytetrahydrofuran-2-carboxamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H47 N15 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ARC-1034
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-01-30
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 705.769
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ARX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3BWJ
_chem_comp.pdbx_subcomponent_list "44A ACA DAR DAR NH2"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ARX N1 N1 N 0 1 Y N N N N N 23.171 26.369 7.556 -13.898 -1.009 0.642 N1 44A 1
ARX C2 C2 C 0 1 Y N N N N N 24.043 27.381 7.662 -13.121 -0.498 1.579 C2 44A 2
ARX N3 N3 N 0 1 Y N N N N N 25.355 27.237 7.945 -11.837 -0.278 1.390 N3 44A 3
ARX C4 C4 C 0 1 Y N N N N N 25.884 26.006 8.128 -11.264 -0.568 0.227 C4 44A 4
ARX C5 C5 C 0 1 Y N N N N N 25.013 24.841 8.020 -12.048 -1.114 -0.803 C5 44A 5
ARX C6 C6 C 0 1 Y N N N N N 23.581 25.069 7.713 -13.413 -1.334 -0.552 C6 44A 6
ARX N6 N6 N 0 1 N N N N N N 22.743 23.995 7.609 -14.235 -1.869 -1.529 N6 44A 7
ARX N7 N7 N 0 1 Y N N N N N 25.780 23.763 8.272 -11.231 -1.313 -1.865 N7 44A 8
ARX C8 C8 C 0 1 Y N N N N N 27.027 24.186 8.513 -10.024 -0.933 -1.559 C8 44A 9
ARX N9 N9 N 0 1 Y N N N N N 27.096 25.519 8.428 -9.993 -0.466 -0.279 N9 44A 10
ARX "O5'" "O5'" O 0 1 N N N N N N 29.663 22.845 9.492 -5.615 0.474 -1.940 OAL 44A 11
ARX "O3'" "O3'" O 0 1 N N N N N N 29.964 26.152 11.903 -6.022 -0.534 2.340 OAN 44A 12
ARX "O2'" "O2'" O 0 1 N N N N N N 29.007 27.910 10.137 -8.501 -1.063 2.579 OAO 44A 13
ARX "O4'" "O4'" O 0 1 N N N N N N 29.484 25.521 8.344 -7.830 0.519 -0.517 OBV 44A 14
ARX "C5'" "C5'" C 0 1 N N N N N N 30.539 23.715 9.538 -5.417 0.504 -0.744 CCC 44A 15
ARX "C3'" "C3'" C 0 1 N N S N N N 29.282 25.603 10.742 -6.611 -0.763 1.059 CCK 44A 16
ARX "C2'" "C2'" C 0 1 N N R N N N 28.391 26.648 10.103 -8.115 -1.084 1.204 CCL 44A 17
ARX "C4'" "C4'" C 0 1 N N S N N N 30.197 25.185 9.559 -6.583 0.528 0.211 CCM 44A 18
ARX "C1'" "C1'" C 0 1 N N R N N N 28.328 26.321 8.635 -8.818 0.051 0.427 CCN 44A 19
ARX C26 C26 C 0 1 N N N N N N 35.764 19.764 7.601 3.250 0.501 -0.774 C1 ACA 20
ARX O28 O28 O 0 1 N N N N N N 36.726 20.106 6.922 3.225 0.532 0.438 O1 ACA 21
ARX C25 C25 C 0 1 N N N N N N 34.401 19.765 6.955 1.961 0.482 -1.554 C2 ACA 22
ARX C24 C24 C 0 1 N N N N N N 34.094 21.160 6.405 0.778 0.507 -0.584 C3 ACA 23
ARX C23 C23 C 0 1 N N N N N N 33.571 22.092 7.487 -0.531 0.487 -1.376 C4 ACA 24
ARX C22 C22 C 0 1 N N N N N N 32.440 21.435 8.283 -1.714 0.512 -0.406 C5 ACA 25
ARX C21 C21 C 0 1 N N N N N N 32.231 22.029 9.672 -3.023 0.492 -1.198 C6 ACA 26
ARX N20 N20 N 0 1 N N N N N N 31.846 23.418 9.594 -4.156 0.516 -0.269 N6 ACA 27
ARX N27 N27 N 0 1 N N N N N N 35.827 19.374 8.872 4.431 0.484 -1.424 N DAR 28
ARX C29 C29 C 0 1 N N R N N N 37.035 19.332 9.692 5.685 0.503 -0.666 CA DAR 29
ARX C37 C37 C 0 1 N N N N N N 36.803 18.372 10.875 6.056 1.949 -0.331 CB DAR 30
ARX C38 C38 C 0 1 N N N N N N 38.034 18.083 11.741 5.005 2.541 0.610 CG DAR 31
ARX C39 C39 C 0 1 N N N N N N 38.024 18.842 13.085 5.377 3.987 0.945 CD DAR 32
ARX N40 N40 N 0 1 N N N N N N 37.400 18.134 14.202 4.370 4.554 1.847 NE DAR 33
ARX C41 C41 C 0 1 N N N N N N 36.153 18.392 14.626 4.494 5.850 2.287 CZ DAR 34
ARX N43 N43 N 0 1 N N N N N N 35.959 19.023 15.793 3.549 6.382 3.133 NH1 DAR 35
ARX N42 N42 N 0 1 N N N N N N 35.153 18.026 13.931 5.506 6.575 1.903 NH2 DAR 36
ARX C30 C30 C 0 1 N N N N N N 37.390 20.716 10.189 6.781 -0.119 -1.492 C DAR 37
ARX O35 O35 O 0 1 N N N N N N 38.571 21.028 10.321 6.539 -0.536 -2.604 O DAR 38
ARX N31 N31 N 0 1 N N N N N N 36.350 21.533 10.437 8.030 -0.210 -0.994 N DAR 39
ARX C32 C32 C 0 1 N N R N N N 36.113 22.514 11.527 9.096 -0.815 -1.798 CA DAR 40
ARX C78 C78 C 0 1 N N N N N N 36.707 23.910 11.219 10.183 -1.363 -0.872 CB DAR 41
ARX C79 C79 C 0 1 N N N N N N 38.228 23.925 11.012 9.610 -2.507 -0.033 CG DAR 42
ARX C85 C85 C 0 1 N N N N N N 38.789 25.325 10.768 10.698 -3.056 0.892 CD DAR 43
ARX N77 N77 N 0 1 N N N N N N 40.001 25.304 9.965 10.149 -4.151 1.696 NE DAR 44
ARX C86 C86 C 0 1 N N N N N N 40.269 26.209 9.007 10.947 -4.803 2.606 CZ DAR 45
ARX N93 N93 N 0 1 N N N N N N 40.277 27.444 9.282 10.432 -5.831 3.359 NH1 DAR 46
ARX N94 N94 N 0 1 N N N N N N 40.551 25.820 7.754 12.192 -4.447 2.754 NH2 DAR 47
ARX C75 C75 C 0 1 N N N N N N 36.322 21.996 12.965 9.690 0.228 -2.709 C DAR 48
ARX O77 O77 O 0 1 N N N N N N 35.406 21.360 13.500 9.266 1.363 -2.690 O DAR 49
ARX N76 N76 N 0 1 N N N N N N 37.473 22.224 13.637 10.694 -0.103 -3.546 N NH2 50
ARX H2 H2 H 0 1 N N N N N N 23.670 28.383 7.510 -13.556 -0.251 2.537 H2 44A 51
ARX HN6 HN6 H 0 1 N N N N N N 21.817 24.313 7.407 -15.177 -2.011 -1.345 HN6 44A 52
ARX HN6A HN6A H 0 0 N N N N N N 23.058 23.396 6.873 -13.870 -2.102 -2.396 HN6A 44A 53
ARX H8 H8 H 0 1 N N N N N N 27.861 23.541 8.744 -9.173 -0.981 -2.222 H8 44A 54
ARX "HO3'" "HO3'" H 0 0 N N N N N N 29.325 26.377 12.569 -5.092 -0.269 2.304 HOAN 44A 55
ARX "HO2'" "HO2'" H 0 0 N N N N N N 29.089 28.199 11.038 -8.089 -1.756 3.114 HOAO 44A 56
ARX "H3'" "H3'" H 0 1 N N N N N N 28.767 24.728 11.164 -6.096 -1.572 0.540 HCK 44A 57
ARX "H2'" "H2'" H 0 1 N N N N N N 27.422 26.657 10.624 -8.346 -2.052 0.758 HCL 44A 58
ARX "H4'" "H4'" H 0 1 N N N N N N 31.156 25.715 9.661 -6.525 1.405 0.857 HCM 44A 59
ARX "H1'" "H1'" H 0 1 N N N N N N 28.311 27.214 7.993 -9.105 0.854 1.106 HCN 44A 60
ARX H25 H25 H 0 1 N N N N N N 34.386 19.036 6.132 1.916 1.355 -2.204 H21 ACA 61
ARX H25A H25A H 0 0 N N N N N N 33.642 19.491 7.702 1.916 -0.424 -2.159 H22 ACA 62
ARX H24 H24 H 0 1 N N N N N N 35.019 21.586 5.989 0.822 -0.367 0.066 H31 ACA 63
ARX H24A H24A H 0 0 N N N N N N 33.330 21.069 5.619 0.823 1.412 0.021 H32 ACA 64
ARX H23 H23 H 0 1 N N N N N N 34.394 22.338 8.174 -0.576 1.361 -2.026 H41 ACA 65
ARX H23A H23A H 0 0 N N N N N N 33.188 23.008 7.014 -0.576 -0.419 -1.981 H42 ACA 66
ARX H22 H22 H 0 1 N N N N N N 31.507 21.563 7.715 -1.670 -0.362 0.244 H51 ACA 67
ARX H22A H22A H 0 0 N N N N N N 32.684 20.369 8.403 -1.669 1.417 0.199 H52 ACA 68
ARX H21 H21 H 0 1 N N N N N N 31.436 21.467 10.184 -3.068 1.366 -1.848 H61 ACA 69
ARX H21A H21A H 0 0 N N N N N N 33.171 21.951 10.238 -3.068 -0.414 -1.803 H62 ACA 70
ARX HN20 HN20 H 0 0 N N N N N N 32.537 24.141 9.582 -3.998 0.540 0.688 HN61 ACA 71
ARX HN27 HN27 H 0 0 N N N N N N 34.973 19.084 9.303 4.451 0.460 -2.393 H DAR 72
ARX H29 H29 H 0 1 N N N N N N 37.878 18.968 9.086 5.560 -0.063 0.257 HA DAR 73
ARX H37 H37 H 0 1 N N N N N N 36.040 18.826 11.525 7.032 1.970 0.155 HB2 DAR 74
ARX H37A H37A H 0 0 N N N N N N 36.457 17.413 10.461 6.094 2.537 -1.248 HB3 DAR 75
ARX H38 H38 H 0 1 N N N N N N 38.059 17.004 11.955 4.029 2.520 0.125 HG2 DAR 76
ARX H38A H38A H 0 0 N N N N N N 38.929 18.388 11.180 4.967 1.954 1.528 HG3 DAR 77
ARX H39 H39 H 0 1 N N N N N N 39.070 19.040 13.361 6.352 4.008 1.431 HD2 DAR 78
ARX H39A H39A H 0 0 N N N N N N 37.466 19.778 12.933 5.415 4.574 0.028 HD3 DAR 79
ARX HN40 HN40 H 0 0 N N N N N N 37.926 17.425 14.671 3.616 4.014 2.132 HE DAR 80
ARX HN43 HN43 H 0 0 N N N N N N 35.030 19.205 16.115 2.795 5.842 3.418 HH11 DAR 81
ARX HN4A HN4A H 0 0 N N N N N N 36.744 19.312 16.342 3.636 7.297 3.443 HH12 DAR 82
ARX HN42 HN42 H 0 0 N N N N N N 34.286 18.268 14.366 5.594 7.490 2.214 HH21 DAR 83
ARX HN31 HN31 H 0 0 N N N N N N 35.607 21.469 9.771 8.224 0.124 -0.105 H DAR 84
ARX H32 H32 H 0 1 N N N N N N 35.023 22.666 11.528 8.683 -1.628 -2.395 HA DAR 85
ARX H78 H78 H 0 1 N N N N N N 36.238 24.279 10.295 11.017 -1.733 -1.469 HB2 DAR 86
ARX H78A H78A H 0 0 N N N N N N 36.477 24.569 12.069 10.533 -0.569 -0.212 HB3 DAR 87
ARX H79 H79 H 0 1 N N N N N N 38.703 23.517 11.916 8.777 -2.138 0.564 HG2 DAR 88
ARX H79A H79A H 0 0 N N N N N N 38.462 23.303 10.136 9.260 -3.301 -0.693 HG3 DAR 89
ARX H85 H85 H 0 1 N N N N N N 38.029 25.918 10.238 11.531 -3.425 0.295 HD2 DAR 90
ARX H85A H85A H 0 0 N N N N N N 39.023 25.782 11.741 11.048 -2.262 1.552 HD3 DAR 91
ARX HN77 HN77 H 0 0 N N N N N N 40.669 24.580 10.134 9.222 -4.417 1.585 HE DAR 92
ARX HN93 HN93 H 0 0 N N N N N N 40.491 28.113 8.571 9.505 -6.096 3.249 HH11 DAR 93
ARX HN9A HN9A H 0 0 N N N N N N 40.069 27.751 10.211 10.995 -6.291 4.001 HH12 DAR 94
ARX HN94 HN94 H 0 0 N N N N N N 40.744 26.597 7.155 12.755 -4.907 3.396 HH21 DAR 95
ARX HN76 HN76 H 0 0 N N N N N N 37.585 21.878 14.569 11.077 0.568 -4.133 HN1 NH2 96
ARX HN7A HN7A H 0 0 N N N N N N 38.212 22.738 13.202 11.034 -1.011 -3.562 HN2 NH2 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ARX C6 C5 DOUB Y N 1
ARX C5 C4 SING Y N 2
ARX C5 N7 SING Y N 3
ARX C75 O77 DOUB N N 4
ARX C32 C75 SING N N 5
ARX C75 N76 SING N N 6
ARX N76 HN76 SING N N 7
ARX N76 HN7A SING N N 8
ARX N31 C32 SING N N 9
ARX C78 C32 SING N N 10
ARX C32 H32 SING N N 11
ARX C79 C78 SING N N 12
ARX C78 H78 SING N N 13
ARX C78 H78A SING N N 14
ARX C85 C79 SING N N 15
ARX C79 H79 SING N N 16
ARX C79 H79A SING N N 17
ARX N77 C85 SING N N 18
ARX C85 H85 SING N N 19
ARX C85 H85A SING N N 20
ARX C86 N77 SING N N 21
ARX N77 HN77 SING N N 22
ARX N94 C86 DOUB N N 23
ARX C86 N93 SING N N 24
ARX N94 HN94 SING N N 25
ARX N93 HN93 SING N N 26
ARX N93 HN9A SING N N 27
ARX C30 N31 SING N N 28
ARX N31 HN31 SING N N 29
ARX C29 C30 SING N N 30
ARX C30 O35 DOUB N N 31
ARX N27 C29 SING N N 32
ARX C29 C37 SING N N 33
ARX C29 H29 SING N N 34
ARX C37 C38 SING N N 35
ARX C37 H37 SING N N 36
ARX C37 H37A SING N N 37
ARX C38 C39 SING N N 38
ARX C38 H38 SING N N 39
ARX C38 H38A SING N N 40
ARX C39 N40 SING N N 41
ARX C39 H39 SING N N 42
ARX C39 H39A SING N N 43
ARX N40 C41 SING N N 44
ARX N40 HN40 SING N N 45
ARX N42 C41 DOUB N N 46
ARX C41 N43 SING N N 47
ARX N42 HN42 SING N N 48
ARX N43 HN43 SING N N 49
ARX N43 HN4A SING N N 50
ARX C26 N27 SING N N 51
ARX N27 HN27 SING N N 52
ARX O28 C26 DOUB N N 53
ARX C25 C26 SING N N 54
ARX C24 C25 SING N N 55
ARX C25 H25 SING N N 56
ARX C25 H25A SING N N 57
ARX C24 C23 SING N N 58
ARX C24 H24 SING N N 59
ARX C24 H24A SING N N 60
ARX C23 C22 SING N N 61
ARX C23 H23 SING N N 62
ARX C23 H23A SING N N 63
ARX C22 C21 SING N N 64
ARX C22 H22 SING N N 65
ARX C22 H22A SING N N 66
ARX N20 C21 SING N N 67
ARX C21 H21 SING N N 68
ARX C21 H21A SING N N 69
ARX "C5'" N20 SING N N 70
ARX N20 HN20 SING N N 71
ARX "O5'" "C5'" DOUB N N 72
ARX "C5'" "C4'" SING N N 73
ARX "O4'" "C4'" SING N N 74
ARX "C4'" "C3'" SING N N 75
ARX "C4'" "H4'" SING N N 76
ARX "O4'" "C1'" SING N N 77
ARX N9 "C1'" SING N N 78
ARX "C1'" "C2'" SING N N 79
ARX "C1'" "H1'" SING N N 80
ARX "C2'" "O2'" SING N N 81
ARX "C2'" "C3'" SING N N 82
ARX "C2'" "H2'" SING N N 83
ARX "O2'" "HO2'" SING N N 84
ARX "C3'" "O3'" SING N N 85
ARX "C3'" "H3'" SING N N 86
ARX "O3'" "HO3'" SING N N 87
ARX C4 N9 SING Y N 88
ARX N9 C8 SING Y N 89
ARX N3 C4 DOUB Y N 90
ARX N7 C8 DOUB Y N 91
ARX C8 H8 SING N N 92
ARX C2 N3 SING Y N 93
ARX N1 C2 DOUB Y N 94
ARX C2 H2 SING N N 95
ARX N1 C6 SING Y N 96
ARX N6 C6 SING N N 97
ARX N6 HN6 SING N N 98
ARX N6 HN6A SING N N 99
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ARX SMILES ACDLabs 12.01 O=C(N)C(NC(=O)C(NC(=O)CCCCCNC(=O)C3OC(n2cnc1c(ncnc12)N)C(O)C3O)CCCNC(=[N@H])N)CCCNC(=[N@H])N
ARX InChI InChI 1.03 InChI=1S/C28H47N15O7/c29-21-17-23(39-12-38-21)43(13-40-17)26-19(46)18(45)20(50-26)25(49)35-9-3-1-2-8-16(44)41-15(7-5-11-37-28(33)34)24(48)42-14(22(30)47)6-4-10-36-27(31)32/h12-15,18-20,26,45-46H,1-11H2,(H2,30,47)(H,35,49)(H,41,44)(H,42,48)(H2,29,38,39)(H4,31,32,36)(H4,33,34,37)/t14-,15-,18+,19-,20+,26-/m1/s1
ARX InChIKey InChI 1.03 KFJBBCJEBVHMMY-KRNUZZCISA-N
ARX SMILES_CANONICAL CACTVS 3.385 NC(=N)NCCC[C@@H](NC(=O)[C@@H](CCCNC(N)=N)NC(=O)CCCCCNC(=O)[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(N)=O
ARX SMILES CACTVS 3.385 NC(=N)NCCC[CH](NC(=O)[CH](CCCNC(N)=N)NC(=O)CCCCCNC(=O)[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(N)=O
ARX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "[H]/N=C(\N)/NCCC[C@H](C(=O)N)NC(=O)[C@@H](CCCN/C(=N/[H])/N)NC(=O)CCCCCNC(=O)[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"
ARX SMILES "OpenEye OEToolkits" 1.7.5 c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C(=O)NCCCCCC(=O)NC(CCCNC(=N)N)C(=O)NC(CCCNC(=N)N)C(=O)N)O)O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ARX "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3S,4R,5R)-N-(6-{[(2R)-1-{[(2R)-1-amino-5-carbamimidamido-1-oxopentan-2-yl]amino}-5-carbamimidamido-1-oxopentan-2-yl]amino}-6-oxohexyl)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-carboxamide (non-preferred name)"
ARX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-N-[6-[[(2R)-1-[[(2R)-1-azanyl-5-carbamimidamido-1-oxo-pentan-2-yl]amino]-5-carbamimidamido-1-oxo-pentan-2-yl]amino]-6-oxo-hexyl]-3,4-dihydroxy-oxolane-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ARX 'Create component' 2008-01-30 RCSB
ARX 'Other modification' 2010-11-16 RCSB
ARX 'Modify aromatic_flag' 2011-06-04 RCSB
ARX 'Modify descriptor' 2011-06-04 RCSB
ARX 'Modify descriptor' 2012-01-05 RCSB
ARX 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ARX
_pdbx_chem_comp_synonyms.name ARC-1034
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
ARX ARC-1034 ChEMBL 'Research Code'
ARX ARC-1034 wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ARX N1 N 3.000 -12.840 1
ARX C2 C 3.000 -11.340 2
ARX N3 N 4.299 -10.590 3
ARX C4 C 5.598 -11.340 4
ARX C5 C 5.598 -12.840 5
ARX C6 C 4.299 -13.590 6
ARX N6 N 4.299 -15.090 7
ARX N7 N 7.018 -13.297 8
ARX C8 C 7.893 -12.090 9
ARX N9 N 7.018 -10.883 10
ARX "O5'" O 5.560 -5.288 11
ARX "O3'" O 10.129 -6.617 12
ARX "O2'" O 10.123 -9.880 13
ARX "O4'" O 6.604 -8.242 14
ARX "C5'" C 7.027 -5.603 15
ARX "C3'" C 8.913 -7.496 16
ARX "C2'" C 8.911 -8.996 17
ARX "C4'" C 7.487 -7.030 18
ARX "C1'" C 7.483 -9.457 19
ARX C26 C 9.666 3.131 20
ARX O28 O 11.133 2.817 21
ARX C25 C 8.660 2.018 22
ARX C24 C 9.121 0.591 23
ARX C23 C 8.116 -0.522 24
ARX C22 C 8.577 -1.949 25
ARX C21 C 7.571 -3.062 26
ARX N20 N 8.032 -4.490 27
ARX N27 N 9.205 4.559 28
ARX C29 C 10.210 5.672 29
ARX C37 C 11.677 5.357 30
ARX C38 C 12.683 6.470 31
ARX C39 C 14.149 6.156 32
ARX N40 N 15.155 7.269 33
ARX C41 C 16.622 6.955 34
ARX N43 N 17.083 5.527 35
ARX N42 N 17.627 8.068 36
ARX C30 C 9.749 7.099 37
ARX O35 O 8.283 7.414 38
ARX N31 N 10.755 8.212 39
ARX C32 C 10.294 9.640 40
ARX C78 C 8.827 9.954 41
ARX C79 C 8.366 11.381 42
ARX C85 C 6.900 11.696 43
ARX N77 N 6.438 13.123 44
ARX C86 C 4.972 13.438 45
ARX N93 N 3.966 12.325 46
ARX N94 N 4.511 14.865 47
ARX C75 C 11.300 10.752 48
ARX O77 O 12.766 10.438 49
ARX N76 N 10.838 12.180 50
ARX HN42 H 17.167 9.495 51
ARX HN94 H 3.044 15.179 52
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ARX C6 C5 DOUBLE NONE 1
ARX C5 C4 SINGLE NONE 2
ARX C5 N7 SINGLE NONE 3
ARX C75 O77 DOUBLE NONE 4
ARX C32 C75 SINGLE NONE 5
ARX C75 N76 SINGLE NONE 6
ARX N31 C32 SINGLE NONE 7
ARX C32 C78 SINGLE BEGINDASH 8
ARX C79 C78 SINGLE NONE 9
ARX C85 C79 SINGLE NONE 10
ARX N77 C85 SINGLE NONE 11
ARX C86 N77 SINGLE ENDUPRIGHT 12
ARX N94 C86 DOUBLE NONE 13
ARX C86 N93 SINGLE ENDDOWNRIGHT 14
ARX C30 N31 SINGLE NONE 15
ARX C29 C30 SINGLE NONE 16
ARX C30 O35 DOUBLE NONE 17
ARX N27 C29 SINGLE NONE 18
ARX C29 C37 SINGLE BEGINWEDGE 19
ARX C37 C38 SINGLE NONE 20
ARX C38 C39 SINGLE NONE 21
ARX C39 N40 SINGLE NONE 22
ARX N40 C41 SINGLE ENDDOWNRIGHT 23
ARX N42 C41 DOUBLE NONE 24
ARX C41 N43 SINGLE ENDDOWNRIGHT 25
ARX C26 N27 SINGLE NONE 26
ARX O28 C26 DOUBLE NONE 27
ARX C25 C26 SINGLE NONE 28
ARX C24 C25 SINGLE NONE 29
ARX C24 C23 SINGLE NONE 30
ARX C23 C22 SINGLE NONE 31
ARX C22 C21 SINGLE NONE 32
ARX N20 C21 SINGLE NONE 33
ARX "C5'" N20 SINGLE NONE 34
ARX "O5'" "C5'" DOUBLE NONE 35
ARX "C4'" "C5'" SINGLE BEGINDASH 36
ARX "O4'" "C4'" SINGLE NONE 37
ARX "C4'" "C3'" SINGLE NONE 38
ARX "O4'" "C1'" SINGLE NONE 39
ARX "C1'" N9 SINGLE BEGINDASH 40
ARX "C1'" "C2'" SINGLE NONE 41
ARX "C2'" "O2'" SINGLE BEGINWEDGE 42
ARX "C2'" "C3'" SINGLE NONE 43
ARX "C3'" "O3'" SINGLE BEGINWEDGE 44
ARX C4 N9 SINGLE NONE 45
ARX N9 C8 SINGLE NONE 46
ARX N3 C4 DOUBLE NONE 47
ARX N7 C8 DOUBLE NONE 48
ARX C2 N3 SINGLE NONE 49
ARX N1 C2 DOUBLE NONE 50
ARX N1 C6 SINGLE NONE 51
ARX N6 C6 SINGLE NONE 52
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ARX MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
ARX adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
ARX amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ARX imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
ARX peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
ARX purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
ARX pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ARX N1 S1 1
ARX C2 S1 1
ARX N3 S1 1
ARX C4 S1 1
ARX C5 S1 1
ARX C6 S1 1
ARX N7 S1 1
ARX C8 S1 1
ARX N9 S1 1
ARX "O4'" S1 1
ARX "C3'" S1 1
ARX "C2'" S1 1
ARX "C4'" S1 1
ARX "C1'" S1 1
ARX N1 F1 1
ARX C6 F1 1
ARX C5 F1 1
ARX C4 F1 1
ARX N3 F1 1
ARX C2 F1 1
ARX N9 F1 1
ARX C8 F1 1
ARX N7 F1 1
ARX N6 F1 1
ARX N20 F2 1
ARX "C5'" F2 1
ARX "O5'" F2 1
ARX "C4'" F2 1
ARX N27 F2 2
ARX C26 F2 2
ARX O28 F2 2
ARX C25 F2 2
ARX N31 F2 3
ARX C30 F2 3
ARX O35 F2 3
ARX C29 F2 3
ARX N76 F2 4
ARX C75 F2 4
ARX O77 F2 4
ARX C32 F2 4
ARX C4 F3 1
ARX C5 F3 1
ARX N7 F3 1
ARX C8 F3 1
ARX N9 F3 1
ARX O35 F4 1
ARX C30 F4 1
ARX C29 F4 1
ARX N27 F4 1
ARX O77 F4 2
ARX C75 F4 2
ARX C32 F4 2
ARX N31 F4 2
ARX N7 F5 1
ARX C8 F5 1
ARX N9 F5 1
ARX C4 F5 1
ARX C5 F5 1
ARX C6 F5 1
ARX N1 F5 1
ARX C2 F5 1
ARX N3 F5 1
ARX C5 F6 1
ARX C6 F6 1
ARX N1 F6 1
ARX C2 F6 1
ARX N3 F6 1
ARX C4 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ARX
_pdbe_chem_comp_rdkit_properties.exactmw 705.378
_pdbe_chem_comp_rdkit_properties.amw 705.782
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 22
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 17
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 13
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 50
_pdbe_chem_comp_rdkit_properties.NumAtoms 97
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 22
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.607
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 353.484
_pdbe_chem_comp_rdkit_properties.tpsa 373.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP -5.123
_pdbe_chem_comp_rdkit_properties.CrippenMR 175.464
_pdbe_chem_comp_rdkit_properties.chi0v 23.566
_pdbe_chem_comp_rdkit_properties.chi1v 11.973
_pdbe_chem_comp_rdkit_properties.chi2v 4.537
_pdbe_chem_comp_rdkit_properties.chi3v 4.537
_pdbe_chem_comp_rdkit_properties.chi4v 2.694
_pdbe_chem_comp_rdkit_properties.chi0n 70.566
_pdbe_chem_comp_rdkit_properties.chi1n 34.498
_pdbe_chem_comp_rdkit_properties.chi2n 4.537
_pdbe_chem_comp_rdkit_properties.chi3n 4.537
_pdbe_chem_comp_rdkit_properties.chi4n 2.694
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.350
_pdbe_chem_comp_rdkit_properties.kappa1 9.700
_pdbe_chem_comp_rdkit_properties.kappa2 18.997
_pdbe_chem_comp_rdkit_properties.kappa3 11.375
_pdbe_chem_comp_rdkit_properties.Phi 3.685
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ARX UniChem ChEMBL CHEMBL450179
ARX UniChem ZINC ZINC000049841176
ARX UniChem 'PubChem TPHARMA' 57303237
ARX UniChem PubChem 25141061
ARX UniChem BindingDb 27222
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ARX N1 -2.995 1.498 1.607 ETKDGv3 1
ARX C2 -2.409 1.497 0.431 ETKDGv3 2
ARX N3 -2.610 0.398 -0.489 ETKDGv3 3
ARX C4 -3.415 -0.550 -0.120 ETKDGv3 4
ARX C5 -4.054 -0.575 1.143 ETKDGv3 5
ARX C6 -3.860 0.413 2.015 ETKDGv3 6
ARX N6 -4.462 0.407 3.309 ETKDGv3 7
ARX N7 -4.794 -1.783 1.267 ETKDGv3 8
ARX C8 -4.588 -2.427 0.147 ETKDGv3 9
ARX N9 -3.710 -1.763 -0.784 ETKDGv3 10
ARX "O5'" -0.936 0.145 -5.176 ETKDGv3 11
ARX "O3'" -4.194 -2.464 -5.222 ETKDGv3 12
ARX "O2'" -5.731 -2.389 -3.095 ETKDGv3 13
ARX "O4'" -2.297 -1.582 -2.657 ETKDGv3 14
ARX "C5'" -1.864 0.051 -4.327 ETKDGv3 15
ARX "C3'" -3.955 -1.353 -4.393 ETKDGv3 16
ARX "C2'" -4.630 -1.519 -3.047 ETKDGv3 17
ARX "C4'" -2.462 -1.297 -4.030 ETKDGv3 18
ARX "C1'" -3.519 -2.100 -2.193 ETKDGv3 19
ARX C26 0.894 4.555 0.167 ETKDGv3 20
ARX O28 0.099 4.209 1.082 ETKDGv3 21
ARX C25 0.427 5.519 -0.887 ETKDGv3 22
ARX C24 -0.475 4.819 -1.913 ETKDGv3 23
ARX C23 0.305 3.868 -2.852 ETKDGv3 24
ARX C22 -0.344 2.481 -2.965 ETKDGv3 25
ARX C21 -1.669 2.516 -3.737 ETKDGv3 26
ARX N20 -2.340 1.222 -3.647 ETKDGv3 27
ARX N27 2.214 3.997 0.106 ETKDGv3 28
ARX C29 2.594 2.820 0.892 ETKDGv3 29
ARX C37 4.128 2.736 1.007 ETKDGv3 30
ARX C38 4.580 1.603 1.941 ETKDGv3 31
ARX C39 6.100 1.613 2.126 ETKDGv3 32
ARX N40 6.515 0.509 2.991 ETKDGv3 33
ARX C41 6.587 -0.853 2.542 ETKDGv3 34
ARX N43 6.935 -1.885 3.468 ETKDGv3 35
ARX N42 6.349 -1.147 1.302 ETKDGv3 36
ARX C30 2.032 1.581 0.243 ETKDGv3 37
ARX O35 2.191 1.401 -0.996 ETKDGv3 38
ARX N31 1.360 0.591 1.035 ETKDGv3 39
ARX C32 0.847 -0.655 0.456 ETKDGv3 40
ARX C78 -0.073 -1.376 1.465 ETKDGv3 41
ARX C79 -0.810 -2.595 0.869 ETKDGv3 42
ARX C85 -0.092 -3.930 1.115 ETKDGv3 43
ARX N77 0.001 -4.230 2.544 ETKDGv3 44
ARX C86 -1.121 -4.650 3.334 ETKDGv3 45
ARX N93 -0.955 -4.868 4.737 ETKDGv3 46
ARX N94 -2.278 -4.841 2.781 ETKDGv3 47
ARX C75 2.001 -1.531 0.046 ETKDGv3 48
ARX O77 2.080 -1.943 -1.143 ETKDGv3 49
ARX N76 3.001 -1.913 0.991 ETKDGv3 50
ARX H2 -1.762 2.316 0.156 ETKDGv3 51
ARX HN6 -5.083 -0.375 3.614 ETKDGv3 52
ARX HN6A -4.283 1.195 3.971 ETKDGv3 53
ARX H8 -5.045 -3.386 -0.059 ETKDGv3 54
ARX "HO3'" -5.054 -2.295 -5.688 ETKDGv3 55
ARX "HO2'" -6.474 -1.876 -3.507 ETKDGv3 56
ARX "H3'" -4.304 -0.417 -4.892 ETKDGv3 57
ARX "H2'" -4.935 -0.521 -2.651 ETKDGv3 58
ARX "H4'" -1.901 -2.066 -4.609 ETKDGv3 59
ARX "H1'" -3.493 -3.208 -2.299 ETKDGv3 60
ARX H25 -0.150 6.331 -0.395 ETKDGv3 61
ARX H25A 1.294 5.992 -1.398 ETKDGv3 62
ARX H24 -1.285 4.285 -1.368 ETKDGv3 63
ARX H24A -0.973 5.597 -2.531 ETKDGv3 64
ARX H23 1.345 3.723 -2.493 ETKDGv3 65
ARX H23A 0.386 4.325 -3.863 ETKDGv3 66
ARX H22 -0.505 2.062 -1.949 ETKDGv3 67
ARX H22A 0.363 1.805 -3.492 ETKDGv3 68
ARX H21 -2.337 3.292 -3.308 ETKDGv3 69
ARX H21A -1.488 2.775 -4.803 ETKDGv3 70
ARX HN20 -3.205 1.156 -3.066 ETKDGv3 71
ARX HN27 2.874 4.356 -0.621 ETKDGv3 72
ARX H29 2.181 2.929 1.920 ETKDGv3 73
ARX H37 4.575 2.586 -0.001 ETKDGv3 74
ARX H37A 4.505 3.703 1.407 ETKDGv3 75
ARX H38 4.271 0.627 1.512 ETKDGv3 76
ARX H38A 4.095 1.720 2.935 ETKDGv3 77
ARX H39 6.616 1.536 1.143 ETKDGv3 78
ARX H39A 6.403 2.574 2.596 ETKDGv3 79
ARX HN40 6.807 0.730 3.969 ETKDGv3 80
ARX HN43 7.129 -1.654 4.467 ETKDGv3 81
ARX HN4A 6.996 -2.882 3.162 ETKDGv3 82
ARX HN42 6.400 -2.129 0.951 ETKDGv3 83
ARX HN31 1.250 0.764 2.061 ETKDGv3 84
ARX H32 0.239 -0.397 -0.441 ETKDGv3 85
ARX H78 -0.844 -0.646 1.796 ETKDGv3 86
ARX H78A 0.496 -1.657 2.378 ETKDGv3 87
ARX H79 -0.959 -2.461 -0.223 ETKDGv3 88
ARX H79A -1.822 -2.654 1.322 ETKDGv3 89
ARX H85 -0.642 -4.747 0.599 ETKDGv3 90
ARX H85A 0.926 -3.902 0.677 ETKDGv3 91
ARX HN77 0.941 -4.175 2.998 ETKDGv3 92
ARX HN93 -1.756 -5.178 5.331 ETKDGv3 93
ARX HN9A -0.026 -4.716 5.189 ETKDGv3 94
ARX HN94 -3.108 -5.149 3.334 ETKDGv3 95
ARX HN76 3.783 -2.542 0.704 ETKDGv3 96
ARX HN7A 2.961 -1.577 1.979 ETKDGv3 97
#