data_B0U
#
_chem_comp.id B0U
_chem_comp.name "3-[2-[2-(2-azanylethoxy)ethoxy]ethoxy]propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H19 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-12-27
_chem_comp.pdbx_modified_date 2019-08-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 221.251
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B0U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6ISI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B0U C6 C1 C 0 1 N N N N N N -50.082 -24.386 -63.715 0.948 1.581 1.111 C6 B0U 1
B0U C5 C2 C 0 1 N N N N N N -50.470 -24.054 -62.276 -0.273 2.261 0.490 C5 B0U 2
B0U C4 C3 C 0 1 N N N N N N -51.906 -25.145 -60.692 -2.285 1.808 -0.733 C4 B0U 3
B0U C7 C4 C 0 1 N N N N N N -47.991 -23.391 -64.365 2.917 0.332 0.554 C7 B0U 4
B0U C8 C5 C 0 1 N N N N N N -46.571 -23.280 -63.807 3.688 -0.253 -0.632 C8 B0U 5
B0U C9 C6 C 0 1 N N N N N N -45.609 -24.217 -64.508 4.924 -0.953 -0.130 C9 B0U 6
B0U O10 O1 O 0 1 N N N N N N -44.895 -24.970 -63.808 5.759 -1.545 -0.998 O10 B0U 7
B0U C3 C7 C 0 1 N N N N N N -53.360 -25.129 -60.244 -3.099 0.669 -1.349 C3 B0U 8
B0U C2 C8 C 0 1 N N N N N N -55.044 -23.464 -59.900 -4.349 -1.297 -0.784 C2 B0U 9
B0U C1 C9 C 0 1 N N N N N N -55.216 -22.755 -61.240 -4.799 -2.149 0.405 C1 B0U 10
B0U OO5 O2 O 0 1 N N N N N N -45.547 -24.206 -65.757 5.164 -0.983 1.054 OO5 B0U 11
B0U O4 O3 O 0 1 N N N N N N -48.660 -24.535 -63.820 1.744 0.996 0.078 O4 B0U 12
B0U O3 O4 O 0 1 N N N N N N -51.784 -24.551 -61.988 -1.109 1.275 -0.120 O3 B0U 13
B0U O2 O5 O 0 1 N N N N N N -53.677 -23.842 -59.718 -3.572 -0.194 -0.313 O2 B0U 14
B0U N1 N1 N 0 1 N N N N N N -55.251 -21.295 -61.053 -5.709 -1.366 1.251 N1 B0U 15
B0U H1 H1 H 0 1 N N N N N N -50.413 -23.573 -64.378 1.540 2.319 1.651 H1 B0U 16
B0U H2 H2 H 0 1 N N N N N N -50.569 -25.325 -64.016 0.620 0.803 1.800 H2 B0U 17
B0U H3 H3 H 0 1 N N N N N N -49.748 -24.519 -61.589 -0.833 2.782 1.266 H3 B0U 18
B0U H4 H4 H 0 1 N N N N N N -50.457 -22.963 -62.139 0.053 2.977 -0.265 H4 B0U 19
B0U H5 H5 H 0 1 N N N N N N -51.550 -26.185 -60.733 -2.000 2.514 -1.512 H5 B0U 20
B0U H6 H6 H 0 1 N N N N N N -51.297 -24.577 -59.973 -2.886 2.319 0.019 H6 B0U 21
B0U H7 H7 H 0 1 N N N N N N -47.943 -23.488 -65.460 2.629 -0.472 1.232 H7 B0U 22
B0U H8 H8 H 0 1 N N N N N N -48.555 -22.484 -64.102 3.549 1.045 1.083 H8 B0U 23
B0U H9 H9 H 0 1 N N N N N N -46.590 -23.528 -62.735 3.056 -0.966 -1.161 H9 B0U 24
B0U H10 H10 H 0 1 N N N N N N -46.218 -22.246 -63.938 3.976 0.551 -1.309 H10 B0U 25
B0U H11 H11 H 0 1 N N N N N N -44.338 -25.493 -64.372 6.539 -1.982 -0.630 H11 B0U 26
B0U H12 H12 H 0 1 N N N N N N -54.012 -25.345 -61.103 -3.949 1.083 -1.893 H12 B0U 27
B0U H13 H13 H 0 1 N N N N N N -53.513 -25.892 -59.466 -2.470 0.102 -2.036 H13 B0U 28
B0U H14 H14 H 0 1 N N N N N N -55.346 -22.786 -59.088 -3.745 -1.905 -1.459 H14 B0U 29
B0U H15 H15 H 0 1 N N N N N N -55.676 -24.364 -59.880 -5.224 -0.924 -1.316 H15 B0U 30
B0U H16 H16 H 0 1 N N N N N N -56.158 -23.083 -61.704 -5.315 -3.037 0.040 H16 B0U 31
B0U H17 H17 H 0 1 N N N N N N -54.373 -23.015 -61.897 -3.928 -2.448 0.987 H17 B0U 32
B0U H18 H18 H 0 1 N N N N N N -55.364 -20.847 -61.940 -6.020 -1.907 2.044 H18 B0U 33
B0U H19 H19 H 0 1 N N N N N N -56.018 -21.054 -60.458 -5.275 -0.505 1.549 H19 B0U 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B0U OO5 C9 DOUB N N 1
B0U C9 O10 SING N N 2
B0U C9 C8 SING N N 3
B0U C7 O4 SING N N 4
B0U C7 C8 SING N N 5
B0U O4 C6 SING N N 6
B0U C6 C5 SING N N 7
B0U C5 O3 SING N N 8
B0U O3 C4 SING N N 9
B0U C1 N1 SING N N 10
B0U C1 C2 SING N N 11
B0U C4 C3 SING N N 12
B0U C3 O2 SING N N 13
B0U C2 O2 SING N N 14
B0U C6 H1 SING N N 15
B0U C6 H2 SING N N 16
B0U C5 H3 SING N N 17
B0U C5 H4 SING N N 18
B0U C4 H5 SING N N 19
B0U C4 H6 SING N N 20
B0U C7 H7 SING N N 21
B0U C7 H8 SING N N 22
B0U C8 H9 SING N N 23
B0U C8 H10 SING N N 24
B0U O10 H11 SING N N 25
B0U C3 H12 SING N N 26
B0U C3 H13 SING N N 27
B0U C2 H14 SING N N 28
B0U C2 H15 SING N N 29
B0U C1 H16 SING N N 30
B0U C1 H17 SING N N 31
B0U N1 H18 SING N N 32
B0U N1 H19 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B0U InChI InChI 1.03 InChI=1S/C9H19NO5/c10-2-4-14-6-8-15-7-5-13-3-1-9(11)12/h1-8,10H2,(H,11,12)
B0U InChIKey InChI 1.03 XUQZKSCQPMNDEY-UHFFFAOYSA-N
B0U SMILES_CANONICAL CACTVS 3.385 NCCOCCOCCOCCC(O)=O
B0U SMILES CACTVS 3.385 NCCOCCOCCOCCC(O)=O
B0U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C(COCCOCCOCCN)C(=O)O
B0U SMILES "OpenEye OEToolkits" 2.0.6 C(COCCOCCOCCN)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id B0U
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "3-[2-[2-(2-azanylethoxy)ethoxy]ethoxy]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B0U 'Create component' 2018-12-27 RCSB
B0U 'Initial release' 2019-08-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
B0U C6 C 10.301 0.375 1
B0U C5 C 11.600 1.125 2
B0U C4 C 14.198 1.125 3
B0U C7 C 7.702 0.375 4
B0U C8 C 6.404 1.125 5
B0U C9 C 5.104 0.375 6
B0U O10 O 5.104 -1.125 7
B0U C3 C 15.497 0.375 8
B0U C2 C 18.095 0.375 9
B0U C1 C 19.394 1.125 10
B0U OO5 O 3.805 1.125 11
B0U O4 O 9.002 1.125 12
B0U O3 O 12.899 0.375 13
B0U O2 O 16.796 1.125 14
B0U N1 N 20.693 0.375 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
B0U OO5 C9 DOUBLE NONE 1
B0U C9 O10 SINGLE NONE 2
B0U C9 C8 SINGLE NONE 3
B0U C7 O4 SINGLE NONE 4
B0U C7 C8 SINGLE NONE 5
B0U O4 C6 SINGLE NONE 6
B0U C6 C5 SINGLE NONE 7
B0U C5 O3 SINGLE NONE 8
B0U O3 C4 SINGLE NONE 9
B0U C1 N1 SINGLE NONE 10
B0U C1 C2 SINGLE NONE 11
B0U C4 C3 SINGLE NONE 12
B0U C3 O2 SINGLE NONE 13
B0U C2 O2 SINGLE NONE 14
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id B0U
_pdbe_chem_comp_rdkit_properties.exactmw 221.126
_pdbe_chem_comp_rdkit_properties.amw 221.253
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.889
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 116.192
_pdbe_chem_comp_rdkit_properties.tpsa 91.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.530
_pdbe_chem_comp_rdkit_properties.CrippenMR 53.764
_pdbe_chem_comp_rdkit_properties.chi0v 6.988
_pdbe_chem_comp_rdkit_properties.chi1v 3.107
_pdbe_chem_comp_rdkit_properties.chi2v 0.588
_pdbe_chem_comp_rdkit_properties.chi3v 0.588
_pdbe_chem_comp_rdkit_properties.chi4v 0.250
_pdbe_chem_comp_rdkit_properties.chi0n 25.988
_pdbe_chem_comp_rdkit_properties.chi1n 12.409
_pdbe_chem_comp_rdkit_properties.chi2n 0.588
_pdbe_chem_comp_rdkit_properties.chi3n 0.588
_pdbe_chem_comp_rdkit_properties.chi4n 0.250
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.690
_pdbe_chem_comp_rdkit_properties.kappa1 2.428
_pdbe_chem_comp_rdkit_properties.kappa2 11.385
_pdbe_chem_comp_rdkit_properties.kappa3 13.310
_pdbe_chem_comp_rdkit_properties.Phi 1.843
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
B0U UniChem PDBe B0U
B0U UniChem ZINC ZINC000035923817
B0U UniChem SureChEMBL SCHEMBL39930
B0U UniChem 'PubChem TPHARMA' 16711014
B0U UniChem ChemicalBook CB42546865
B0U UniChem MedChemExpress HY-W040165
B0U UniChem PubChem 11608245
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
B0U C6 1.943 1.615 -0.341 ETKDGv3 1
B0U C5 0.901 0.726 0.334 ETKDGv3 2
B0U C4 -1.372 0.505 0.768 ETKDGv3 3
B0U C7 4.007 1.397 0.707 ETKDGv3 4
B0U C8 5.265 0.535 0.783 ETKDGv3 5
B0U C9 4.922 -0.888 1.100 ETKDGv3 6
B0U O10 4.681 -1.789 0.068 ETKDGv3 7
B0U C3 -2.081 -0.195 -0.389 ETKDGv3 8
B0U C2 -3.904 -1.531 -0.931 ETKDGv3 9
B0U C1 -5.138 -0.667 -1.197 ETKDGv3 10
B0U OO5 4.810 -1.258 2.299 ETKDGv3 11
B0U O4 3.198 0.962 -0.367 ETKDGv3 12
B0U O3 -0.359 1.362 0.274 ETKDGv3 13
B0U O2 -3.139 -0.979 0.124 ETKDGv3 14
B0U N1 -5.986 -1.295 -2.205 ETKDGv3 15
B0U H1 1.626 1.786 -1.392 ETKDGv3 16
B0U H2 1.968 2.618 0.148 ETKDGv3 17
B0U H3 0.881 -0.254 -0.195 ETKDGv3 18
B0U H4 1.198 0.566 1.394 ETKDGv3 19
B0U H5 -1.005 -0.248 1.506 ETKDGv3 20
B0U H6 -2.116 1.132 1.304 ETKDGv3 21
B0U H7 4.320 2.453 0.539 ETKDGv3 22
B0U H8 3.469 1.332 1.681 ETKDGv3 23
B0U H9 5.807 0.579 -0.186 ETKDGv3 24
B0U H10 5.939 0.936 1.570 ETKDGv3 25
B0U H11 4.430 -2.750 0.266 ETKDGv3 26
B0U H12 -2.461 0.583 -1.090 ETKDGv3 27
B0U H13 -1.348 -0.844 -0.919 ETKDGv3 28
B0U H14 -3.325 -1.681 -1.874 ETKDGv3 29
B0U H15 -4.246 -2.539 -0.610 ETKDGv3 30
B0U H16 -5.713 -0.555 -0.252 ETKDGv3 31
B0U H17 -4.829 0.345 -1.542 ETKDGv3 32
B0U H18 -6.852 -0.716 -2.297 ETKDGv3 33
B0U H19 -5.494 -1.241 -3.126 ETKDGv3 34
#