data_B31
#
_chem_comp.id B31
_chem_comp.name
(2S)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-4-[(2,6-diamino-2,6-dideoxy-alpha-D-glucopyranosyl)oxy]-2-hydroxy-3-(beta-D-xylofuranosyloxy)cyclohexyl]-2-hydroxybutanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H41 N5 O12"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Butirosin A"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-05-10
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 555.577
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B31
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3H8P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B31 C01 C01 C 0 1 N N R N N N 52.210 29.318 15.101 -2.608 0.160 -0.419 C01 B31 1
B31 C02 C02 C 0 1 N N N N N N 51.912 29.849 16.508 -2.299 -1.322 -0.196 C02 B31 2
B31 C03 C03 C 0 1 N N S N N N 52.210 31.361 16.509 -0.832 -1.594 -0.537 C03 B31 3
B31 C04 C04 C 0 1 N N R N N N 51.295 32.107 15.501 0.067 -0.745 0.363 C04 B31 4
B31 C05 C05 C 0 1 N N R N N N 51.559 31.536 14.070 -0.243 0.737 0.140 C05 B31 5
B31 C06 C06 C 0 1 N N S N N N 51.305 30.008 14.065 -1.709 1.009 0.481 C06 B31 6
B31 N01 N01 N 0 1 N N N N N N 51.851 27.907 15.090 -4.012 0.420 -0.092 N01 B31 7
B31 N03 N03 N 0 1 N N N N N N 51.874 31.859 17.871 -0.536 -3.017 -0.324 N03 B31 8
B31 O04 O04 O 0 1 N N N N N N 51.662 33.484 15.591 1.436 -0.999 0.044 O04 B31 9
B31 O05 O05 O 0 1 N N N N N N 50.658 32.142 13.154 0.597 1.531 0.981 O05 B31 10
B31 O06 O06 O 0 1 N N N N N N 51.636 29.479 12.782 -1.998 2.393 0.273 O06 B31 11
B31 C11 C11 C 0 1 N N R N N N 50.650 34.333 15.044 2.213 -1.466 1.149 C11 B31 12
B31 C12 C12 C 0 1 N N R N N N 51.293 35.639 14.558 3.681 -1.086 0.938 C12 B31 13
B31 C13 C13 C 0 1 N N R N N N 51.785 36.483 15.728 4.203 -1.779 -0.324 C13 B31 14
B31 C14 C14 C 0 1 N N S N N N 50.643 36.707 16.682 4.010 -3.292 -0.180 C14 B31 15
B31 C15 C15 C 0 1 N N R N N N 50.197 35.355 17.226 2.529 -3.587 0.074 C15 B31 16
B31 C16 C16 C 0 1 N N N N N N 49.032 35.575 18.190 2.336 -5.090 0.279 C16 B31 17
B31 N12 N12 N 0 1 N N N N N N 52.506 35.253 13.781 3.793 0.370 0.781 N12 B31 18
B31 N16 N16 N 0 1 N N N N N N 48.806 34.243 18.841 0.919 -5.371 0.543 N16 B31 19
B31 O11 O11 O 0 1 N N N N N N 49.713 34.521 16.144 2.099 -2.887 1.244 O11 B31 20
B31 O13 O13 O 0 1 N N N N N N 52.211 37.734 15.219 5.593 -1.489 -0.488 O13 B31 21
B31 O14 O14 O 0 1 N N N N N N 51.104 37.516 17.755 4.427 -3.943 -1.381 O14 B31 22
B31 C21 C21 C 0 1 N N S N N N 51.324 32.317 11.893 0.912 2.816 0.442 C21 B31 23
B31 C22 C22 C 0 1 N N R N N N 50.390 31.820 10.828 1.719 3.632 1.470 C22 B31 24
B31 C23 C23 C 0 1 N N R N N N 49.692 33.044 10.353 3.042 3.963 0.738 C23 B31 25
B31 C24 C24 C 0 1 N N R N N N 50.649 34.169 10.703 2.642 3.791 -0.750 C24 B31 26
B31 C25 C25 C 0 1 N N N N N N 49.918 35.445 11.079 3.871 3.475 -1.605 C25 B31 27
B31 O21 O21 O 0 1 N N N N N N 51.443 33.725 11.807 1.733 2.667 -0.729 O21 B31 28
B31 O22 O22 O 0 1 N N N N N N 51.168 31.286 9.761 1.022 4.831 1.815 O22 B31 29
B31 O23 O23 O 0 1 N N N N N N 48.487 33.171 11.112 4.070 3.038 1.100 O23 B31 30
B31 O25 O25 O 0 1 N N N N N N 50.883 36.487 11.147 3.494 3.436 -2.983 O25 B31 31
B31 C51 C51 C 0 1 N N N N N N 52.737 26.990 14.529 -4.969 0.214 -1.019 C51 B31 32
B31 C52 C52 C 0 1 N N S N N N 52.262 25.541 14.558 -6.414 0.482 -0.683 C52 B31 33
B31 C53 C53 C 0 1 N N N N N N 52.248 24.921 13.158 -6.873 -0.491 0.405 C53 B31 34
B31 C54 C54 C 0 1 N N N N N N 51.267 25.628 12.217 -8.299 -0.140 0.835 C54 B31 35
B31 N54 N54 N 0 1 N N N N N N 51.481 25.149 10.840 -8.740 -1.074 1.879 N54 B31 36
B31 O51 O51 O 0 1 N N N N N N 53.808 27.309 14.044 -4.668 -0.187 -2.123 O51 B31 37
B31 O52 O52 O 0 1 N N N N N N 50.938 25.459 15.095 -7.216 0.303 -1.852 O52 B31 38
B31 H01 H01 H 0 1 N N N N N N 53.268 29.497 14.857 -2.424 0.416 -1.462 H01 B31 39
B31 H02 H02 H 0 1 N N N N N N 50.857 29.672 16.763 -2.483 -1.579 0.847 H02 B31 40
B31 H02A H02A H 0 0 N N N N N N 52.534 29.333 17.254 -2.940 -1.927 -0.838 H02A B31 41
B31 H03 H03 H 0 1 N N N N N N 53.261 31.534 16.233 -0.649 -1.337 -1.581 H03 B31 42
B31 H04 H04 H 0 1 N N N N N N 50.223 31.982 15.715 -0.117 -1.001 1.406 H04 B31 43
B31 H05 H05 H 0 1 N N N N N N 52.600 31.745 13.782 -0.059 0.994 -0.903 H05 B31 44
B31 H06 H06 H 0 1 N N N N N N 50.247 29.828 14.305 -1.893 0.752 1.525 H06 B31 45
B31 HN01 HN01 H 0 0 N N N N N N 50.982 27.601 15.479 -4.253 0.741 0.791 HN01 B31 46
B31 HN03 HN03 H 0 0 N N N N N N 51.799 31.085 18.500 -1.019 -3.592 -0.997 HN03 B31 47
B31 HN0A HN0A H 0 0 N N N N N N 52.594 32.477 18.187 0.458 -3.187 -0.350 HN0A B31 48
B31 HO06 HO06 H 0 0 N N N N N N 51.710 30.189 12.155 -2.912 2.638 0.471 HO06 B31 49
B31 H11 H11 H 0 1 N N N N N N 50.132 33.920 14.166 1.848 -1.010 2.069 H11 B31 50
B31 H12 H12 H 0 1 N N N N N N 50.554 36.212 13.978 4.267 -1.406 1.799 H12 B31 51
B31 H13 H13 H 0 1 N N N N N N 52.611 35.977 16.249 3.650 -1.421 -1.192 H13 B31 52
B31 H14 H14 H 0 1 N N N N N N 49.803 37.203 16.174 4.603 -3.657 0.659 H14 B31 53
B31 H15 H15 H 0 1 N N N N N N 51.049 34.872 17.727 1.941 -3.258 -0.783 H15 B31 54
B31 H16 H16 H 0 1 N N N N N N 49.281 36.342 18.939 2.651 -5.623 -0.619 H16 B31 55
B31 H16A H16A H 0 0 N N N N N N 48.132 35.935 17.670 2.936 -5.422 1.126 H16A B31 56
B31 HN12 HN12 H 0 0 N N N N N N 52.269 35.167 12.813 3.450 0.850 1.599 HN12 B31 57
B31 HN1A HN1A H 0 0 N N N N N N 53.209 35.955 13.890 4.744 0.640 0.576 HN1A B31 58
B31 HN16 HN16 H 0 0 N N N N N N 48.756 33.533 18.139 0.760 -6.361 0.651 HN16 B31 59
B31 HN1B HN1B H 0 0 N N N N N N 49.563 34.044 19.463 0.594 -4.862 1.352 HN1B B31 60
B31 HO13 HO13 H 0 0 N N N N N N 52.306 38.352 15.935 5.990 -1.897 -1.270 HO13 B31 61
B31 HO14 HO14 H 0 0 N N N N N N 51.207 36.982 18.534 5.356 -3.795 -1.607 HO14 B31 62
B31 H21 H21 H 0 1 N N N N N N 52.287 31.796 11.790 -0.006 3.345 0.186 H21 B31 63
B31 H22 H22 H 0 1 N N N N N N 49.695 31.045 11.185 1.915 3.036 2.362 H22 B31 64
B31 H23 H23 H 0 1 N N N N N N 49.437 33.037 9.283 3.354 4.988 0.941 H23 B31 65
B31 H24 H24 H 0 1 N N N N N N 51.269 34.404 9.825 2.139 4.685 -1.118 H24 B31 66
B31 H25 H25 H 0 1 N N N N N N 49.157 35.683 10.321 4.625 4.247 -1.456 H25 B31 67
B31 H25A H25A H 0 0 N N N N N N 49.408 35.327 12.047 4.278 2.507 -1.312 H25A B31 68
B31 HO22 HO22 H 0 0 N N N N N N 50.618 31.167 8.996 0.159 4.680 2.225 HO22 B31 69
B31 HO23 HO23 H 0 0 N N N N N N 48.697 33.199 12.038 4.292 3.046 2.041 HO23 B31 70
B31 HO25 HO25 H 0 0 N N N N N N 51.098 36.661 12.056 4.225 3.241 -3.585 HO25 B31 71
B31 H52 H52 H 0 1 N N N N N N 52.970 24.987 15.192 -6.519 1.505 -0.323 H52 B31 72
B31 H53 H53 H 0 1 N N N N N N 53.259 24.999 12.731 -6.852 -1.509 0.015 H53 B31 73
B31 H53A H53A H 0 0 N N N N N N 51.926 23.874 13.256 -6.206 -0.417 1.264 H53A B31 74
B31 H54 H54 H 0 1 N N N N N N 50.235 25.406 12.527 -8.320 0.878 1.225 H54 B31 75
B31 H54A H54A H 0 0 N N N N N N 51.435 26.714 12.259 -8.966 -0.213 -0.024 H54A B31 76
B31 HN54 HN54 H 0 0 N N N N N N 51.529 25.931 10.218 -9.679 -0.862 2.180 HN54 B31 77
B31 HN5A HN5A H 0 0 N N N N N N 52.337 24.634 10.796 -8.668 -2.029 1.563 HN5A B31 78
B31 HO52 HO52 H 0 0 N N N N N N 50.981 25.441 16.044 -7.170 -0.587 -2.227 HO52 B31 79
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B31 C06 C01 SING N N 1
B31 N01 C01 SING N N 2
B31 C01 C02 SING N N 3
B31 C01 H01 SING N N 4
B31 C02 C03 SING N N 5
B31 C02 H02 SING N N 6
B31 C02 H02A SING N N 7
B31 C04 C03 SING N N 8
B31 C03 N03 SING N N 9
B31 C03 H03 SING N N 10
B31 C05 C04 SING N N 11
B31 C04 O04 SING N N 12
B31 C04 H04 SING N N 13
B31 O05 C05 SING N N 14
B31 C06 C05 SING N N 15
B31 C05 H05 SING N N 16
B31 O06 C06 SING N N 17
B31 C06 H06 SING N N 18
B31 C51 N01 SING N N 19
B31 N01 HN01 SING N N 20
B31 N03 HN03 SING N N 21
B31 N03 HN0A SING N N 22
B31 C11 O04 SING N N 23
B31 C21 O05 SING N N 24
B31 O06 HO06 SING N N 25
B31 C12 C11 SING N N 26
B31 C11 O11 SING N N 27
B31 C11 H11 SING N N 28
B31 N12 C12 SING N N 29
B31 C12 C13 SING N N 30
B31 C12 H12 SING N N 31
B31 O13 C13 SING N N 32
B31 C13 C14 SING N N 33
B31 C13 H13 SING N N 34
B31 C14 C15 SING N N 35
B31 C14 O14 SING N N 36
B31 C14 H14 SING N N 37
B31 O11 C15 SING N N 38
B31 C15 C16 SING N N 39
B31 C15 H15 SING N N 40
B31 C16 N16 SING N N 41
B31 C16 H16 SING N N 42
B31 C16 H16A SING N N 43
B31 N12 HN12 SING N N 44
B31 N12 HN1A SING N N 45
B31 N16 HN16 SING N N 46
B31 N16 HN1B SING N N 47
B31 O13 HO13 SING N N 48
B31 O14 HO14 SING N N 49
B31 C22 C21 SING N N 50
B31 O21 C21 SING N N 51
B31 C21 H21 SING N N 52
B31 O22 C22 SING N N 53
B31 C23 C22 SING N N 54
B31 C22 H22 SING N N 55
B31 C23 C24 SING N N 56
B31 C23 O23 SING N N 57
B31 C23 H23 SING N N 58
B31 C24 C25 SING N N 59
B31 C24 O21 SING N N 60
B31 C24 H24 SING N N 61
B31 C25 O25 SING N N 62
B31 C25 H25 SING N N 63
B31 C25 H25A SING N N 64
B31 O22 HO22 SING N N 65
B31 O23 HO23 SING N N 66
B31 O25 HO25 SING N N 67
B31 O51 C51 DOUB N N 68
B31 C51 C52 SING N N 69
B31 C53 C52 SING N N 70
B31 C52 O52 SING N N 71
B31 C52 H52 SING N N 72
B31 C54 C53 SING N N 73
B31 C53 H53 SING N N 74
B31 C53 H53A SING N N 75
B31 N54 C54 SING N N 76
B31 C54 H54 SING N N 77
B31 C54 H54A SING N N 78
B31 N54 HN54 SING N N 79
B31 N54 HN5A SING N N 80
B31 O52 HO52 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B31 SMILES ACDLabs 10.04 O=C(NC3C(O)C(OC1OC(C(O)C1O)CO)C(OC2OC(CN)C(O)C(O)C2N)C(N)C3)C(O)CCN
B31 SMILES_CANONICAL CACTVS 3.341 NCC[C@H](O)C(=O)N[C@@H]1C[C@H](N)[C@@H](O[C@H]2O[C@H](CN)[C@@H](O)[C@H](O)[C@H]2N)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H]3O)[C@H]1O
B31 SMILES CACTVS 3.341 NCC[CH](O)C(=O)N[CH]1C[CH](N)[CH](O[CH]2O[CH](CN)[CH](O)[CH](O)[CH]2N)[CH](O[CH]3O[CH](CO)[CH](O)[CH]3O)[CH]1O
B31 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1NC(=O)[C@H](CCN)O)O)O[C@H]2[C@@H]([C@H]([C@H](O2)CO)O)O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CN)O)O)N)N
B31 SMILES "OpenEye OEToolkits" 1.5.0 C1C(C(C(C(C1NC(=O)C(CCN)O)O)OC2C(C(C(O2)CO)O)O)OC3C(C(C(C(O3)CN)O)O)N)N
B31 InChI InChI 1.03 InChI=1S/C21H41N5O12/c22-2-1-8(28)19(34)26-7-3-6(24)17(37-20-11(25)15(32)13(30)9(4-23)35-20)18(12(7)29)38-21-16(33)14(31)10(5-27)36-21/h6-18,20-21,27-33H,1-5,22-25H2,(H,26,34)/t6-,7+,8-,9+,10+,11+,12-,13+,14-,15+,16+,17+,18+,20+,21-/m0/s1
B31 InChIKey InChI 1.03 XEQLFNPSYWZPOW-SVRMBHBBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B31 "SYSTEMATIC NAME" ACDLabs 10.04 (2S)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-4-[(2,6-diamino-2,6-dideoxy-alpha-D-glucopyranosyl)oxy]-2-hydroxy-3-(beta-D-xylofuranosyloxy)cyclohexyl]-2-hydroxybutanamide
B31 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-4-[(2R,3R,4R,5S,6R)-3-amino-6-(aminomethyl)-4,5-dihydroxy-oxan-2-yl]oxy-3-[(2S,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-2-hydroxy-cyclohexyl]-2-hydroxy-butanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B31 'Create component' 2009-05-10 RCSB
B31 'Modify descriptor' 2011-06-04 RCSB
B31 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id B31
_pdbx_chem_comp_synonyms.name "Butirosin A"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id B31
_pdbe_chem_comp_synonyms.name 'Butirosin A'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
B31 C01 C 12.551 0.131 1
B31 C02 C 11.051 0.131 2
B31 C03 C 10.301 -1.168 3
B31 C04 C 11.051 -2.467 4
B31 C05 C 12.551 -2.467 5
B31 C06 C 13.301 -1.168 6
B31 N01 N 13.301 1.430 7
B31 N03 N 8.801 -1.168 8
B31 O04 O 10.301 -3.766 9
B31 O05 O 13.301 -3.766 10
B31 O06 O 14.801 -1.168 11
B31 C11 C 9.002 -4.516 12
B31 C12 C 9.002 -6.016 13
B31 C13 C 7.702 -6.766 14
B31 C14 C 6.404 -6.016 15
B31 C15 C 6.404 -4.516 16
B31 C16 C 5.104 -3.766 17
B31 N12 N 10.301 -6.766 18
B31 N16 N 3.805 -4.516 19
B31 O11 O 7.702 -3.766 20
B31 O13 O 7.702 -8.266 21
B31 O14 O 5.104 -6.766 22
B31 C21 C 14.801 -3.766 23
B31 C22 C 15.682 -4.979 24
B31 C23 C 17.109 -4.516 25
B31 C24 C 17.109 -3.016 26
B31 C25 C 18.322 -2.134 27
B31 O21 O 15.682 -2.552 28
B31 O22 O 15.219 -6.406 29
B31 O23 O 18.322 -5.398 30
B31 O25 O 19.693 -2.744 31
B31 C51 C 12.551 2.729 32
B31 C52 C 13.301 4.028 33
B31 C53 C 12.551 5.327 34
B31 C54 C 13.301 6.626 35
B31 N54 N 12.551 7.925 36
B31 O51 O 11.051 2.729 37
B31 O52 O 14.801 4.028 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
B31 C06 C01 SINGLE NONE 1
B31 C01 N01 SINGLE BEGINWEDGE 2
B31 C01 C02 SINGLE NONE 3
B31 C02 C03 SINGLE NONE 4
B31 C04 C03 SINGLE NONE 5
B31 C03 N03 SINGLE BEGINWEDGE 6
B31 C05 C04 SINGLE NONE 7
B31 C04 O04 SINGLE BEGINDASH 8
B31 C05 O05 SINGLE BEGINWEDGE 9
B31 C06 C05 SINGLE NONE 10
B31 C06 O06 SINGLE BEGINDASH 11
B31 C51 N01 SINGLE NONE 12
B31 C11 O04 SINGLE BEGINDASH 13
B31 C21 O05 SINGLE BEGINDASH 14
B31 C12 C11 SINGLE NONE 15
B31 C11 O11 SINGLE NONE 16
B31 C12 N12 SINGLE BEGINDASH 17
B31 C12 C13 SINGLE NONE 18
B31 C13 O13 SINGLE BEGINWEDGE 19
B31 C13 C14 SINGLE NONE 20
B31 C14 C15 SINGLE NONE 21
B31 C14 O14 SINGLE BEGINDASH 22
B31 O11 C15 SINGLE NONE 23
B31 C15 C16 SINGLE BEGINWEDGE 24
B31 C16 N16 SINGLE NONE 25
B31 C22 C21 SINGLE NONE 26
B31 O21 C21 SINGLE NONE 27
B31 C22 O22 SINGLE BEGINWEDGE 28
B31 C23 C22 SINGLE NONE 29
B31 C23 C24 SINGLE NONE 30
B31 C23 O23 SINGLE BEGINDASH 31
B31 C24 C25 SINGLE BEGINDASH 32
B31 C24 O21 SINGLE NONE 33
B31 C25 O25 SINGLE NONE 34
B31 O51 C51 DOUBLE NONE 35
B31 C51 C52 SINGLE NONE 36
B31 C53 C52 SINGLE NONE 37
B31 C52 O52 SINGLE BEGINDASH 38
B31 C54 C53 SINGLE NONE 39
B31 N54 C54 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
B31 MurckoScaffold S1 scaffold 'C1CC[C@@H](O[C@@H]2CCCC[C@H]2O[C@H]2CCCO2)OC1' InChI=1S/C15H26O4/c1-2-7-13(19-15-9-5-11-17-15)12(6-1)18-14-8-3-4-10-16-14/h12-15H,1-11H2/t12-,13-,14-,15+/m1/s1 QHKOMLCENKQGLA-TUVASFSCSA-N
B31 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
B31 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
B31 furanose F3 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
B31 pyranose F4 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
B31 ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
B31 Z2856434893 F6 fragment CC(O)CNC1CCCCC1 InChI=1S/C9H19NO/c1-8(11)7-10-9-5-3-2-4-6-9/h8-11H,2-7H2,1H3 HFHPBMVMXFZJNO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
B31 C01 S1 1
B31 C02 S1 1
B31 C03 S1 1
B31 C04 S1 1
B31 C05 S1 1
B31 C06 S1 1
B31 O04 S1 1
B31 O05 S1 1
B31 C11 S1 1
B31 C12 S1 1
B31 C13 S1 1
B31 C14 S1 1
B31 C15 S1 1
B31 O11 S1 1
B31 C21 S1 1
B31 C22 S1 1
B31 C23 S1 1
B31 C24 S1 1
B31 O21 S1 1
B31 N01 F1 1
B31 C51 F1 1
B31 O51 F1 1
B31 C52 F1 1
B31 C01 F2 1
B31 C06 F2 1
B31 C05 F2 1
B31 C04 F2 1
B31 C03 F2 1
B31 C02 F2 1
B31 C23 F3 1
B31 C24 F3 1
B31 O21 F3 1
B31 C21 F3 1
B31 C22 F3 1
B31 O05 F3 1
B31 C14 F4 1
B31 C15 F4 1
B31 O11 F4 1
B31 C11 F4 1
B31 C12 F4 1
B31 C13 F4 1
B31 O04 F4 1
B31 C22 F5 1
B31 C23 F5 1
B31 C24 F5 1
B31 O21 F5 1
B31 C21 F5 1
B31 C25 F5 1
B31 O25 F5 1
B31 O23 F5 1
B31 O22 F5 1
B31 C53 F6 1
B31 C52 F6 1
B31 O52 F6 1
B31 C51 F6 1
B31 N01 F6 1
B31 C01 F6 1
B31 C06 F6 1
B31 C05 F6 1
B31 C04 F6 1
B31 C03 F6 1
B31 C02 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id B31
_pdbe_chem_comp_rdkit_properties.exactmw 555.275
_pdbe_chem_comp_rdkit_properties.amw 555.582
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 16
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 12
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 79
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.952
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 15
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 276.838
_pdbe_chem_comp_rdkit_properties.tpsa 311.710
_pdbe_chem_comp_rdkit_properties.CrippenClogP -7.785
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.419
_pdbe_chem_comp_rdkit_properties.chi0v 17.635
_pdbe_chem_comp_rdkit_properties.chi1v 9.108
_pdbe_chem_comp_rdkit_properties.chi2v 4.048
_pdbe_chem_comp_rdkit_properties.chi3v 4.048
_pdbe_chem_comp_rdkit_properties.chi4v 2.401
_pdbe_chem_comp_rdkit_properties.chi0n 58.635
_pdbe_chem_comp_rdkit_properties.chi1n 28.490
_pdbe_chem_comp_rdkit_properties.chi2n 4.048
_pdbe_chem_comp_rdkit_properties.chi3n 4.048
_pdbe_chem_comp_rdkit_properties.chi4n 2.401
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.130
_pdbe_chem_comp_rdkit_properties.kappa1 7.436
_pdbe_chem_comp_rdkit_properties.kappa2 13.486
_pdbe_chem_comp_rdkit_properties.kappa3 6.597
_pdbe_chem_comp_rdkit_properties.Phi 2.639
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
B31 UniChem ChEMBL CHEMBL428032
B31 UniChem PDBe B31
B31 UniChem 'KEGG LIGAND' C17585
B31 UniChem ChEBI 65112
B31 UniChem ZINC ZINC000060184704
B31 UniChem fdasrs 285798GUS5
B31 UniChem SureChEMBL SCHEMBL456140
B31 UniChem NMRShiftDB 70115536
B31 UniChem Nikkaji J87.141I
B31 UniChem MetaboLights MTBLC65112
B31 UniChem BRENDA 247708
B31 UniChem PubChem 12302171
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
B31 C01 2.129 -1.988 0.371 ETKDGv3 1
B31 C02 1.017 -2.896 -0.176 ETKDGv3 2
B31 C03 -0.378 -2.293 0.088 ETKDGv3 3
B31 C04 -0.493 -0.874 -0.519 ETKDGv3 4
B31 C05 0.623 0.041 0.027 ETKDGv3 5
B31 C06 2.017 -0.574 -0.239 ETKDGv3 6
B31 N01 3.437 -2.568 0.051 ETKDGv3 7
B31 N03 -1.418 -3.166 -0.460 ETKDGv3 8
B31 O04 -1.737 -0.293 -0.153 ETKDGv3 9
B31 O05 0.535 1.292 -0.640 ETKDGv3 10
B31 O06 3.031 0.263 0.261 ETKDGv3 11
B31 C11 -2.733 -0.386 -1.168 ETKDGv3 12
B31 C12 -3.460 0.969 -1.318 ETKDGv3 13
B31 C13 -4.275 1.271 -0.043 ETKDGv3 14
B31 C14 -5.170 0.075 0.320 ETKDGv3 15
B31 C15 -4.316 -1.213 0.369 ETKDGv3 16
B31 C16 -5.195 -2.438 0.663 ETKDGv3 17
B31 N12 -2.491 2.038 -1.568 ETKDGv3 18
B31 N16 -4.385 -3.652 0.690 ETKDGv3 19
B31 O11 -3.659 -1.422 -0.874 ETKDGv3 20
B31 O13 -5.047 2.437 -0.198 ETKDGv3 21
B31 O14 -5.761 0.316 1.573 ETKDGv3 22
B31 C21 0.569 2.374 0.271 ETKDGv3 23
B31 C22 0.754 3.680 -0.497 ETKDGv3 24
B31 C23 -0.180 4.656 0.203 ETKDGv3 25
B31 C24 -0.783 3.813 1.331 ETKDGv3 26
B31 C25 -2.250 4.141 1.642 ETKDGv3 27
B31 O21 -0.650 2.460 0.972 ETKDGv3 28
B31 O22 2.089 4.109 -0.417 ETKDGv3 29
B31 O23 -1.167 5.106 -0.692 ETKDGv3 30
B31 O25 -2.707 3.368 2.719 ETKDGv3 31
B31 C51 4.549 -2.524 0.960 ETKDGv3 32
B31 C52 5.917 -2.994 0.529 ETKDGv3 33
B31 C53 6.747 -1.843 -0.067 ETKDGv3 34
B31 C54 6.168 -1.284 -1.380 ETKDGv3 35
B31 N54 7.038 -0.255 -1.945 ETKDGv3 36
B31 O51 4.402 -2.055 2.121 ETKDGv3 37
B31 O52 5.819 -4.048 -0.394 ETKDGv3 38
B31 H01 2.001 -1.925 1.475 ETKDGv3 39
B31 H02 1.089 -3.890 0.316 ETKDGv3 40
B31 H02A 1.160 -3.044 -1.270 ETKDGv3 41
B31 H03 -0.531 -2.220 1.189 ETKDGv3 42
B31 H04 -0.335 -0.941 -1.621 ETKDGv3 43
B31 H05 0.476 0.118 1.134 ETKDGv3 44
B31 H06 2.162 -0.652 -1.340 ETKDGv3 45
B31 HN01 3.606 -2.886 -0.930 ETKDGv3 46
B31 HN03 -1.364 -4.096 0.016 ETKDGv3 47
B31 HN0A -1.241 -3.322 -1.479 ETKDGv3 48
B31 HO06 2.924 0.308 1.247 ETKDGv3 49
B31 H11 -2.318 -0.610 -2.176 ETKDGv3 50
B31 H12 -4.156 0.896 -2.186 ETKDGv3 51
B31 H13 -3.565 1.443 0.796 ETKDGv3 52
B31 H14 -5.951 -0.037 -0.472 ETKDGv3 53
B31 H15 -3.576 -1.134 1.199 ETKDGv3 54
B31 H16 -5.709 -2.318 1.643 ETKDGv3 55
B31 H16A -5.971 -2.536 -0.129 ETKDGv3 56
B31 HN12 -1.962 1.810 -2.441 ETKDGv3 57
B31 HN1A -3.014 2.920 -1.773 ETKDGv3 58
B31 HN16 -3.771 -3.618 1.536 ETKDGv3 59
B31 HN1B -5.031 -4.464 0.824 ETKDGv3 60
B31 HO13 -5.669 2.290 -0.958 ETKDGv3 61
B31 HO14 -6.680 -0.058 1.541 ETKDGv3 62
B31 H21 1.404 2.258 1.004 ETKDGv3 63
B31 H22 0.459 3.541 -1.565 ETKDGv3 64
B31 H23 0.368 5.525 0.638 ETKDGv3 65
B31 H24 -0.190 3.990 2.260 ETKDGv3 66
B31 H25 -2.358 5.225 1.875 ETKDGv3 67
B31 H25A -2.883 3.917 0.759 ETKDGv3 68
B31 HO22 2.186 4.849 -1.071 ETKDGv3 69
B31 HO23 -0.735 5.790 -1.268 ETKDGv3 70
B31 HO25 -2.327 3.774 3.542 ETKDGv3 71
B31 H52 6.461 -3.357 1.432 ETKDGv3 72
B31 H53 7.776 -2.219 -0.257 ETKDGv3 73
B31 H53A 6.824 -1.023 0.681 ETKDGv3 74
B31 H54 6.050 -2.101 -2.124 ETKDGv3 75
B31 H54A 5.168 -0.838 -1.196 ETKDGv3 76
B31 HN54 7.980 -0.671 -2.128 ETKDGv3 77
B31 HN5A 7.158 0.509 -1.241 ETKDGv3 78
B31 HO52 5.499 -4.842 0.110 ETKDGv3 79
#