data_B8O
#
_chem_comp.id B8O
_chem_comp.name
2-{[(3R,5R)-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methylpiperidin-3-yl]amino}-3-methyl-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H25 N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-22
_chem_comp.pdbx_modified_date 2019-04-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 395.455
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B8O
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6J3P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B8O C7 C1 C 0 1 N N R N N N -14.834 -6.194 15.003 -1.617 -0.879 -0.018 C7 B8O 1
B8O C8 C2 C 0 1 N N N N N N -14.828 -7.667 15.338 -1.447 -2.075 0.921 C8 B8O 2
B8O C6 C3 C 0 1 Y N N N N N -11.066 -5.650 14.289 -5.136 0.196 -0.885 C6 B8O 3
B8O C10 C4 C 0 1 N N N N N N -16.679 -8.098 14.232 0.906 -1.580 1.219 C10 B8O 4
B8O N9 N1 N 0 1 N N N N N N -16.041 -8.224 15.390 -0.077 -2.593 0.813 N9 B8O 5
B8O C5 C5 C 0 1 Y N N N N N -12.513 -6.197 14.385 -3.847 -0.303 -0.997 C5 B8O 6
B8O C4 C6 C 0 1 Y N N N N N -13.459 -5.565 14.944 -3.017 -0.335 0.108 C4 B8O 7
B8O C1 C7 C 0 1 Y N N N N N -10.914 -4.354 14.889 -5.592 0.661 0.343 C1 B8O 8
B8O C3 C8 C 0 1 Y N N N N N -13.345 -4.482 15.468 -3.470 0.130 1.328 C3 B8O 9
B8O C2 C9 C 0 1 Y N N N N N -12.234 -3.831 15.522 -4.754 0.628 1.448 C2 B8O 10
B8O C11 C10 C 0 1 N N R N N N -16.882 -6.628 13.842 0.806 -0.369 0.290 C11 B8O 11
B8O C12 C11 C 0 1 N N N N N N -15.537 -6.022 13.675 -0.610 0.210 0.363 C12 B8O 12
B8O C14 C12 C 0 1 N N N N N N -16.044 -9.468 15.716 0.083 -3.826 1.596 C14 B8O 13
B8O C15 C13 C 0 1 N N N N N N -18.605 -5.620 12.504 3.073 0.584 0.266 C15 B8O 14
B8O C17 C14 C 0 1 N N N N N N -20.370 -4.607 10.955 5.243 1.502 0.255 C17 B8O 15
B8O C18 C15 C 0 1 Y N N N N N -20.648 -3.733 11.992 5.641 0.459 -0.603 C18 B8O 16
B8O C19 C16 C 0 1 Y N N N N N -19.885 -3.850 13.251 4.693 -0.498 -0.983 C19 B8O 17
B8O C22 C17 C 0 1 Y N N N N N -21.357 -2.175 13.379 6.640 -1.010 -1.947 C22 B8O 18
B8O C23 C18 C 0 1 Y N N N N N -20.500 -2.738 14.028 5.357 -1.410 -1.832 C23 B8O 19
B8O C26 C19 C 0 1 N N N N N N -8.845 -5.507 13.410 -7.342 0.386 -1.750 C26 B8O 20
B8O C27 C20 C 0 1 N N N N N N -8.742 -4.405 14.366 -7.536 1.514 -0.728 C27 B8O 21
B8O C29 C21 C 0 1 N N N N N N -19.008 -6.516 10.203 3.515 2.612 1.565 C29 B8O 22
B8O N13 N2 N 0 1 N N N N N N -17.638 -6.577 12.634 1.773 0.649 0.707 N13 B8O 23
B8O N16 N3 N 0 1 N N N N N N -19.382 -5.535 11.211 3.959 1.539 0.672 N16 B8O 24
B8O N20 N4 N 0 1 N N N N N N -18.970 -4.718 13.484 3.428 -0.397 -0.528 N20 B8O 25
B8O N21 N5 N 0 1 Y N N N N N -21.508 -2.638 12.258 6.832 0.117 -1.207 N21 B8O 26
B8O O24 O1 O 0 1 N N N N N N -21.002 -4.644 9.824 6.041 2.352 0.613 O24 B8O 27
B8O O25 O2 O 0 1 N N N N N N -10.014 -6.298 13.599 -5.938 0.228 -1.983 O25 B8O 28
B8O O28 O3 O 0 1 N N N N N N -9.727 -3.769 14.880 -6.855 1.148 0.478 O28 B8O 29
B8O H1 H1 H 0 1 N N N N N N -15.419 -5.669 15.772 -1.441 -1.195 -1.046 H1 B8O 30
B8O H2 H2 H 0 1 N N N N N N -14.240 -8.192 14.571 -1.638 -1.762 1.947 H2 B8O 31
B8O H3 H3 H 0 1 N N N N N N -14.348 -7.795 16.319 -2.154 -2.858 0.643 H3 B8O 32
B8O H4 H4 H 0 1 N N N N N N -17.663 -8.582 14.315 0.704 -1.269 2.244 H4 B8O 33
B8O H5 H5 H 0 1 N N N N N N -16.091 -8.595 13.447 1.909 -2.003 1.158 H5 B8O 34
B8O H7 H7 H 0 1 N N N N N N -12.726 -7.164 13.954 -3.491 -0.668 -1.950 H7 B8O 35
B8O H8 H8 H 0 1 N N N N N N -14.221 -4.036 15.915 -2.819 0.104 2.190 H8 B8O 36
B8O H9 H9 H 0 1 N N N N N N -12.219 -2.878 16.030 -5.105 0.990 2.403 H9 B8O 37
B8O H10 H10 H 0 1 N N N N N N -17.419 -6.115 14.653 1.021 -0.677 -0.734 H10 B8O 38
B8O H11 H11 H 0 1 N N N N N N -14.981 -6.539 12.879 -0.698 1.046 -0.330 H11 B8O 39
B8O H12 H12 H 0 1 N N N N N N -15.627 -4.954 13.426 -0.811 0.553 1.378 H12 B8O 40
B8O H13 H13 H 0 1 N N N N N N -15.520 -9.598 16.674 -0.607 -4.583 1.225 H13 B8O 41
B8O H14 H14 H 0 1 N N N N N N -17.082 -9.818 15.816 1.107 -4.187 1.499 H14 B8O 42
B8O H15 H15 H 0 1 N N N N N N -15.533 -10.052 14.937 -0.132 -3.621 2.645 H15 B8O 43
B8O H16 H16 H 0 1 N N N N N N -21.932 -1.343 13.757 7.398 -1.508 -2.533 H16 B8O 44
B8O H17 H17 H 0 1 N N N N N N -20.220 -2.468 15.036 4.917 -2.275 -2.304 H17 B8O 45
B8O H18 H18 H 0 1 N N N N N N -7.962 -6.153 13.523 -7.756 -0.542 -1.356 H18 B8O 46
B8O H19 H19 H 0 1 N N N N N N -8.865 -5.088 12.393 -7.843 0.646 -2.683 H19 B8O 47
B8O H20 H20 H 0 1 N N N N N N -8.183 -4.814 15.221 -7.116 2.441 -1.118 H20 B8O 48
B8O H21 H21 H 0 1 N N N N N N -8.134 -3.640 13.862 -8.599 1.647 -0.525 H21 B8O 49
B8O H22 H22 H 0 1 N N N N N N -18.208 -7.161 10.597 4.352 3.276 1.779 H22 B8O 50
B8O H23 H23 H 0 1 N N N N N N -19.883 -7.132 9.948 2.716 3.177 1.084 H23 B8O 51
B8O H24 H24 H 0 1 N N N N N N -18.650 -5.997 9.302 3.145 2.181 2.495 H24 B8O 52
B8O H25 H25 H 0 1 N N N N N N -17.464 -7.229 11.896 1.496 1.369 1.295 H25 B8O 53
B8O H26 H26 H 0 1 N N N N N N -22.169 -2.282 11.598 7.669 0.600 -1.121 H26 B8O 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B8O O24 C17 DOUB N N 1
B8O C29 N16 SING N N 2
B8O C17 N16 SING N N 3
B8O C17 C18 SING N N 4
B8O N16 C15 SING N N 5
B8O C18 N21 SING Y N 6
B8O C18 C19 DOUB Y N 7
B8O N21 C22 SING Y N 8
B8O C15 N13 SING N N 9
B8O C15 N20 DOUB N N 10
B8O N13 C11 SING N N 11
B8O C19 N20 SING N N 12
B8O C19 C23 SING Y N 13
B8O C22 C23 DOUB Y N 14
B8O C26 O25 SING N N 15
B8O C26 C27 SING N N 16
B8O O25 C6 SING N N 17
B8O C12 C11 SING N N 18
B8O C12 C7 SING N N 19
B8O C11 C10 SING N N 20
B8O C10 N9 SING N N 21
B8O C6 C5 DOUB Y N 22
B8O C6 C1 SING Y N 23
B8O C27 O28 SING N N 24
B8O C5 C4 SING Y N 25
B8O O28 C1 SING N N 26
B8O C1 C2 DOUB Y N 27
B8O C4 C7 SING N N 28
B8O C4 C3 DOUB Y N 29
B8O C7 C8 SING N N 30
B8O C8 N9 SING N N 31
B8O N9 C14 SING N N 32
B8O C3 C2 SING Y N 33
B8O C7 H1 SING N N 34
B8O C8 H2 SING N N 35
B8O C8 H3 SING N N 36
B8O C10 H4 SING N N 37
B8O C10 H5 SING N N 38
B8O C5 H7 SING N N 39
B8O C3 H8 SING N N 40
B8O C2 H9 SING N N 41
B8O C11 H10 SING N N 42
B8O C12 H11 SING N N 43
B8O C12 H12 SING N N 44
B8O C14 H13 SING N N 45
B8O C14 H14 SING N N 46
B8O C14 H15 SING N N 47
B8O C22 H16 SING N N 48
B8O C23 H17 SING N N 49
B8O C26 H18 SING N N 50
B8O C26 H19 SING N N 51
B8O C27 H20 SING N N 52
B8O C27 H21 SING N N 53
B8O C29 H22 SING N N 54
B8O C29 H23 SING N N 55
B8O C29 H24 SING N N 56
B8O N13 H25 SING N N 57
B8O N21 H26 SING N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B8O SMILES ACDLabs 12.01 C1(CN(CC(C1)NC2=Nc3c(C(N2C)=O)ncc3)C)c4cc5c(cc4)OCCO5
B8O InChI InChI 1.03 InChI=1S/C21H25N5O3/c1-25-11-14(13-3-4-17-18(10-13)29-8-7-28-17)9-15(12-25)23-21-24-16-5-6-22-19(16)20(27)26(21)2/h3-6,10,14-15,22H,7-9,11-12H2,1-2H3,(H,23,24)/t14-,15+/m0/s1
B8O InChIKey InChI 1.03 PUFPGLSWMMJNSE-LSDHHAIUSA-N
B8O SMILES_CANONICAL CACTVS 3.385 CN1C[C@@H](C[C@@H](C1)c2ccc3OCCOc3c2)NC4=Nc5cc[nH]c5C(=O)N4C
B8O SMILES CACTVS 3.385 CN1C[CH](C[CH](C1)c2ccc3OCCOc3c2)NC4=Nc5cc[nH]c5C(=O)N4C
B8O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CN1C[C@H](C[C@H](C1)NC2=Nc3cc[nH]c3C(=O)N2C)c4ccc5c(c4)OCCO5
B8O SMILES "OpenEye OEToolkits" 2.0.6 CN1CC(CC(C1)NC2=Nc3cc[nH]c3C(=O)N2C)c4ccc5c(c4)OCCO5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B8O "SYSTEMATIC NAME" ACDLabs 12.01 2-{[(3R,5R)-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methylpiperidin-3-yl]amino}-3-methyl-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one
B8O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 2-[[(3~{R},5~{R})-5-(2,3-dihydro-1,4-benzodioxin-6-yl)-1-methyl-piperidin-3-yl]amino]-3-methyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B8O 'Create component' 2019-01-22 PDBJ
B8O 'Initial release' 2019-05-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
B8O C7 C 10.212 2.655 1
B8O C8 C 8.913 3.405 2
B8O C6 C 14.109 3.405 3
B8O C10 C 7.614 1.155 4
B8O N9 N 7.614 2.655 5
B8O C5 C 12.810 2.655 6
B8O C4 C 11.511 3.405 7
B8O C1 C 14.109 4.905 8
B8O C3 C 11.511 4.905 9
B8O C2 C 12.810 5.655 10
B8O C11 C 8.913 0.405 11
B8O C12 C 10.212 1.155 12
B8O C14 C 6.314 3.405 13
B8O C15 C 7.614 -1.845 14
B8O C17 C 5.016 -1.845 15
B8O C18 C 5.016 -3.345 16
B8O C19 C 6.314 -4.095 17
B8O C22 C 4.518 -5.707 18
B8O C23 C 6.001 -5.553 19
B8O C26 C 16.809 3.374 20
B8O C27 C 16.809 4.936 21
B8O C29 C 6.314 0.405 22
B8O N13 N 8.913 -1.095 23
B8O N16 N 6.314 -1.095 24
B8O N20 N 7.614 -3.345 25
B8O N21 N 3.910 -4.346 26
B8O O24 O 3.716 -1.095 27
B8O O25 O 15.450 2.603 28
B8O O28 O 15.450 5.707 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
B8O O24 C17 DOUBLE NONE 1
B8O C29 N16 SINGLE NONE 2
B8O C17 N16 SINGLE NONE 3
B8O C17 C18 SINGLE NONE 4
B8O N16 C15 SINGLE NONE 5
B8O C18 N21 SINGLE NONE 6
B8O C18 C19 DOUBLE NONE 7
B8O N21 C22 SINGLE NONE 8
B8O C15 N13 SINGLE NONE 9
B8O C15 N20 DOUBLE NONE 10
B8O C11 N13 SINGLE BEGINWEDGE 11
B8O C19 N20 SINGLE NONE 12
B8O C19 C23 SINGLE NONE 13
B8O C22 C23 DOUBLE NONE 14
B8O C26 O25 SINGLE NONE 15
B8O C26 C27 SINGLE NONE 16
B8O O25 C6 SINGLE NONE 17
B8O C12 C11 SINGLE NONE 18
B8O C12 C7 SINGLE NONE 19
B8O C11 C10 SINGLE NONE 20
B8O C10 N9 SINGLE NONE 21
B8O C6 C5 DOUBLE NONE 22
B8O C6 C1 SINGLE NONE 23
B8O C27 O28 SINGLE NONE 24
B8O C5 C4 SINGLE NONE 25
B8O O28 C1 SINGLE NONE 26
B8O C1 C2 DOUBLE NONE 27
B8O C7 C4 SINGLE BEGINWEDGE 28
B8O C4 C3 DOUBLE NONE 29
B8O C7 C8 SINGLE NONE 30
B8O C8 N9 SINGLE NONE 31
B8O N9 C14 SINGLE NONE 32
B8O C3 C2 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
B8O MurckoScaffold S1 scaffold 'O=c1[nH]c(N[C@H]2CNC[C@@H](c3ccc4c(c3)OCCO4)C2)nc2cc[nH]c12' InChI=1S/C19H21N5O3/c25-18-17-14(3-4-21-17)23-19(24-18)22-13-7-12(9-20-10-13)11-1-2-15-16(8-11)27-6-5-26-15/h1-4,8,12-13,20-21H,5-7,9-10H2,(H2,22,23,24,25)/t12-,13+/m0/s1 RBAGQONLQHLYHE-QWHCGFSZSA-N
B8O phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
B8O pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
B8O pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
B8O Z31190928 F4 fragment CC(C)Nc1ncccn1 InChI=1S/C7H11N3/c1-6(2)10-7-8-4-3-5-9-7/h3-6H,1-2H3,(H,8,9,10) FTCYIGBVOHNHCD-UHFFFAOYSA-N
B8O Z54628578 F5 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
B8O C7 S1 1
B8O C8 S1 1
B8O C6 S1 1
B8O C10 S1 1
B8O N9 S1 1
B8O C5 S1 1
B8O C4 S1 1
B8O C1 S1 1
B8O C3 S1 1
B8O C2 S1 1
B8O C11 S1 1
B8O C12 S1 1
B8O C15 S1 1
B8O C17 S1 1
B8O C18 S1 1
B8O C19 S1 1
B8O C22 S1 1
B8O C23 S1 1
B8O C26 S1 1
B8O C27 S1 1
B8O N13 S1 1
B8O N16 S1 1
B8O N20 S1 1
B8O N21 S1 1
B8O O24 S1 1
B8O O25 S1 1
B8O O28 S1 1
B8O C6 F1 1
B8O C5 F1 1
B8O C4 F1 1
B8O C3 F1 1
B8O C2 F1 1
B8O C1 F1 1
B8O C18 F2 1
B8O C17 F2 1
B8O N16 F2 1
B8O C15 F2 1
B8O N20 F2 1
B8O C19 F2 1
B8O C18 F3 1
B8O C19 F3 1
B8O C23 F3 1
B8O C22 F3 1
B8O N21 F3 1
B8O C10 F4 1
B8O C11 F4 1
B8O C12 F4 1
B8O N13 F4 1
B8O C15 F4 1
B8O N16 F4 1
B8O C17 F4 1
B8O C18 F4 1
B8O C19 F4 1
B8O N20 F4 1
B8O C11 F5 1
B8O N13 F5 1
B8O C15 F5 1
B8O N16 F5 1
B8O C17 F5 1
B8O C18 F5 1
B8O C19 F5 1
B8O N20 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id B8O
_pdbe_chem_comp_rdkit_properties.exactmw 395.196
_pdbe_chem_comp_rdkit_properties.amw 395.463
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 203.240
_pdbe_chem_comp_rdkit_properties.tpsa 84.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.044
_pdbe_chem_comp_rdkit_properties.CrippenMR 106.624
_pdbe_chem_comp_rdkit_properties.chi0v 13.961
_pdbe_chem_comp_rdkit_properties.chi1v 7.704
_pdbe_chem_comp_rdkit_properties.chi2v 3.624
_pdbe_chem_comp_rdkit_properties.chi3v 3.624
_pdbe_chem_comp_rdkit_properties.chi4v 2.382
_pdbe_chem_comp_rdkit_properties.chi0n 38.961
_pdbe_chem_comp_rdkit_properties.chi1n 20.098
_pdbe_chem_comp_rdkit_properties.chi2n 3.624
_pdbe_chem_comp_rdkit_properties.chi3n 3.624
_pdbe_chem_comp_rdkit_properties.chi4n 2.382
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.000
_pdbe_chem_comp_rdkit_properties.kappa1 5.372
_pdbe_chem_comp_rdkit_properties.kappa2 7.111
_pdbe_chem_comp_rdkit_properties.kappa3 3.332
_pdbe_chem_comp_rdkit_properties.Phi 1.317
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
B8O UniChem ChEMBL CHEMBL4574669
B8O UniChem PDBe B8O
B8O UniChem PubChem 138105961
B8O UniChem BindingDb 50512964
B8O UniChem MedChemExpress HY-128597
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
B8O C7 -1.564 0.330 -1.359 ETKDGv3 1
B8O C8 -1.470 -0.978 -2.192 ETKDGv3 2
B8O C6 -4.217 0.928 1.323 ETKDGv3 3
B8O C10 0.867 -0.679 -2.756 ETKDGv3 4
B8O N9 -0.119 -1.564 -2.098 ETKDGv3 5
B8O C5 -3.514 1.064 0.193 ETKDGv3 6
B8O C4 -2.380 0.144 -0.093 ETKDGv3 7
B8O C1 -3.898 -0.154 2.274 ETKDGv3 8
B8O C3 -2.069 -0.814 0.808 ETKDGv3 9
B8O C2 -2.866 -0.972 2.043 ETKDGv3 10
B8O C11 0.789 0.775 -2.215 ETKDGv3 11
B8O C12 -0.173 0.910 -1.019 ETKDGv3 12
B8O C14 -0.095 -2.898 -2.719 ETKDGv3 13
B8O C15 2.983 0.780 -0.855 ETKDGv3 14
B8O C17 5.069 0.883 0.521 ETKDGv3 15
B8O C18 4.617 -0.357 1.137 ETKDGv3 16
B8O C19 3.490 -0.902 0.763 ETKDGv3 17
B8O C22 4.349 -2.228 2.332 ETKDGv3 18
B8O C23 3.291 -2.125 1.526 ETKDGv3 19
B8O C26 -5.827 1.821 2.951 ETKDGv3 20
B8O C27 -5.946 0.396 3.516 ETKDGv3 21
B8O C29 4.587 2.739 -1.129 ETKDGv3 22
B8O N13 2.120 1.307 -1.886 ETKDGv3 23
B8O N16 4.217 1.473 -0.489 ETKDGv3 24
B8O N20 2.658 -0.337 -0.253 ETKDGv3 25
B8O N21 5.247 -1.132 2.143 ETKDGv3 26
B8O O24 6.162 1.410 0.863 ETKDGv3 27
B8O O25 -5.264 1.798 1.636 ETKDGv3 28
B8O O28 -4.698 -0.296 3.410 ETKDGv3 29
B8O H1 -2.080 1.080 -2.000 ETKDGv3 30
B8O H2 -1.715 -0.755 -3.257 ETKDGv3 31
B8O H3 -2.235 -1.710 -1.846 ETKDGv3 32
B8O H4 1.886 -1.096 -2.607 ETKDGv3 33
B8O H5 0.698 -0.661 -3.857 ETKDGv3 34
B8O H7 -3.760 1.860 -0.499 ETKDGv3 35
B8O H8 -1.237 -1.485 0.635 ETKDGv3 36
B8O H9 -2.625 -1.760 2.743 ETKDGv3 37
B8O H10 0.364 1.405 -3.030 ETKDGv3 38
B8O H11 -0.276 1.982 -0.744 ETKDGv3 39
B8O H12 0.248 0.381 -0.139 ETKDGv3 40
B8O H13 -0.399 -2.851 -3.789 ETKDGv3 41
B8O H14 -0.782 -3.582 -2.176 ETKDGv3 42
B8O H15 0.924 -3.334 -2.650 ETKDGv3 43
B8O H16 4.513 -3.033 3.036 ETKDGv3 44
B8O H17 2.462 -2.817 1.460 ETKDGv3 45
B8O H18 -5.169 2.422 3.615 ETKDGv3 46
B8O H19 -6.827 2.302 2.916 ETKDGv3 47
B8O H20 -6.718 -0.159 2.941 ETKDGv3 48
B8O H21 -6.258 0.434 4.581 ETKDGv3 49
B8O H22 3.763 3.475 -1.015 ETKDGv3 50
B8O H23 4.792 2.568 -2.207 ETKDGv3 51
B8O H24 5.496 3.184 -0.673 ETKDGv3 52
B8O H25 2.437 2.129 -2.446 ETKDGv3 53
B8O H26 6.153 -0.950 2.628 ETKDGv3 54
#