data_B9B
#
_chem_comp.id B9B
_chem_comp.name "6-propyl, guanosine-5'-monophosphate"
_chem_comp.type "RNA linking"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C13 H20 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id G
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-09-25
_chem_comp.pdbx_modified_date 2019-04-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 405.300
_chem_comp.one_letter_code G
_chem_comp.three_letter_code B9B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6EK0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B9B C2 C1 C 0 1 Y N N N N N 252.802 244.959 316.755 -3.887 1.571 -1.083 C2 B9B 1
B9B C5 C2 C 0 1 Y N N N N N 250.504 243.657 317.513 -2.796 -0.539 0.173 C5 B9B 2
B9B C6 C3 C 0 1 Y N N N N N 251.699 242.908 317.133 -4.180 -0.476 -0.050 C6 B9B 3
B9B C8 C4 C 0 1 Y N N N N N 248.626 244.516 318.102 -0.743 -1.002 0.698 C8 B9B 4
B9B "C1'" C5 C 0 1 N N R N N N 249.033 246.949 317.881 0.483 1.018 -0.192 "C1'" B9B 5
B9B "C2'" C6 C 0 1 N N R N N N 247.660 247.161 317.275 0.721 2.016 0.963 "C2'" B9B 6
B9B "C3'" C7 C 0 1 N N S N N N 247.190 248.415 317.991 2.258 2.061 1.109 "C3'" B9B 7
B9B C4 C8 C 0 1 Y N N N N N 250.593 245.106 317.450 -1.999 0.528 -0.276 C4 B9B 8
B9B "C4'" C9 C 0 1 N N R N N N 247.868 248.322 319.357 2.767 1.084 0.026 "C4'" B9B 9
B9B "C5'" C10 C 0 1 N N N N N N 246.966 247.879 320.476 3.985 0.310 0.536 "C5'" B9B 10
B9B N1 N1 N 0 1 Y N N N N N 252.778 243.611 316.755 -4.675 0.585 -0.675 N1 B9B 11
B9B N2 N2 N 0 1 N N N N N N 253.923 245.590 316.351 -4.454 2.659 -1.725 N2 B9B 12
B9B N3 N3 N 0 1 Y N N N N N 251.728 245.701 317.066 -2.577 1.553 -0.893 N3 B9B 13
B9B N7 N4 N 0 1 Y N N N N N 249.272 243.351 317.926 -1.967 -1.438 0.758 N7 B9B 14
B9B N9 N5 N 0 1 Y N N N N N 249.425 245.550 317.836 -0.710 0.208 0.069 N9 B9B 15
B9B "O2'" O1 O 0 1 N N N N N N 247.737 247.280 315.871 0.213 3.307 0.621 "O2'" B9B 16
B9B "O3'" O2 O 0 1 N N N N N N 247.661 249.555 317.290 2.747 3.381 0.863 "O3'" B9B 17
B9B "O4'" O3 O 0 1 N N N N N N 248.934 247.356 319.220 1.662 0.184 -0.208 "O4'" B9B 18
B9B "O5'" O4 O 0 1 N N N N N N 246.485 246.561 320.258 4.510 -0.500 -0.518 "O5'" B9B 19
B9B O6 O5 O 0 1 N N N N N N 251.699 241.548 317.173 -4.994 -1.477 0.362 O6 B9B 20
B9B OP1 O6 O 0 1 N N N N N N 246.113 244.184 320.949 6.936 -0.647 0.162 OP1 B9B 21
B9B OP2 O7 O 0 1 N N N N N N 245.120 246.202 322.279 5.458 -2.614 0.725 OP2 B9B 22
B9B P P1 P 0 1 N N N N N N 246.228 245.583 321.475 5.797 -1.450 -0.335 P B9B 23
B9B C61 C11 C 0 1 N N N N N N 250.862 240.798 316.307 -6.390 -1.332 0.093 C61 B9B 24
B9B C62 C12 C 0 1 N N N N N N 250.691 239.408 316.889 -7.142 -2.552 0.628 C62 B9B 25
B9B C63 C13 C 0 1 N N N N N N 249.854 239.482 318.139 -8.637 -2.396 0.341 C63 B9B 26
B9B H1 H1 H 0 1 N N N N N N 247.597 244.603 318.417 0.120 -1.521 1.089 H1 B9B 27
B9B H2 H2 H 0 1 N N N N N N 249.767 247.564 317.339 0.381 1.549 -1.138 H2 B9B 28
B9B H3 H3 H 0 1 N N N N N N 247.008 246.321 317.557 0.260 1.654 1.882 H3 B9B 29
B9B H4 H4 H 0 1 N N N N N N 246.095 248.415 318.100 2.557 1.721 2.101 H4 B9B 30
B9B H5 H5 H 0 1 N N N N N N 248.289 249.307 319.607 3.017 1.626 -0.886 H5 B9B 31
B9B H6 H6 H 0 1 N N N N N N 247.528 247.904 321.421 4.749 1.014 0.868 H6 B9B 32
B9B H7 H7 H 0 1 N N N N N N 246.110 248.567 320.540 3.688 -0.325 1.370 H7 B9B 33
B9B H8 H8 H 0 1 N N N N N N 254.613 244.913 316.095 -5.413 2.692 -1.869 H8 B9B 34
B9B H9 H9 H 0 1 N N N N N N 253.714 246.168 315.562 -3.893 3.389 -2.030 H9 B9B 35
B9B H10 H10 H 0 1 N N N N N N 246.866 247.412 315.516 0.336 3.973 1.311 H10 B9B 36
B9B H11 H11 H 0 1 N N N N N N 247.370 250.343 317.734 2.410 4.046 1.478 H11 B9B 37
B9B H13 H13 H 0 1 N N N N N N 244.408 245.579 322.370 4.719 -3.181 0.464 H13 B9B 38
B9B H14 H14 H 0 1 N N N N N N 251.325 240.729 315.311 -6.762 -0.432 0.583 H14 B9B 39
B9B H15 H15 H 0 1 N N N N N N 249.881 241.288 316.222 -6.546 -1.251 -0.983 H15 B9B 40
B9B H16 H16 H 0 1 N N N N N N 250.192 238.762 316.152 -6.770 -3.452 0.139 H16 B9B 41
B9B H17 H17 H 0 1 N N N N N N 251.678 238.990 317.134 -6.986 -2.632 1.704 H17 B9B 42
B9B H18 H18 H 0 1 N N N N N N 249.731 238.473 318.559 -9.009 -1.496 0.830 H18 B9B 43
B9B H19 H19 H 0 1 N N N N N N 250.353 240.128 318.876 -8.793 -2.315 -0.735 H19 B9B 44
B9B H20 H20 H 0 1 N N N N N N 248.866 239.900 317.895 -9.173 -3.265 0.722 H20 B9B 45
B9B OP3 OP3 O 0 1 N N N N N N 247.559 245.713 322.352 6.182 -2.110 -1.752 OP3 B9B 46
B9B H12 H12 H 0 1 N N N N N N 248.013 244.878 322.366 6.950 -2.697 -1.717 H12 B9B 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B9B "O2'" "C2'" SING N N 1
B9B C61 C62 SING N N 2
B9B C61 O6 SING N N 3
B9B N2 C2 SING N N 4
B9B C2 N1 DOUB Y N 5
B9B C2 N3 SING Y N 6
B9B N1 C6 SING Y N 7
B9B C62 C63 SING N N 8
B9B N3 C4 DOUB Y N 9
B9B C6 O6 SING N N 10
B9B C6 C5 DOUB Y N 11
B9B "C2'" "C1'" SING N N 12
B9B "C2'" "C3'" SING N N 13
B9B "O3'" "C3'" SING N N 14
B9B C4 C5 SING Y N 15
B9B C4 N9 SING Y N 16
B9B C5 N7 SING Y N 17
B9B N9 "C1'" SING N N 18
B9B N9 C8 SING Y N 19
B9B "C1'" "O4'" SING N N 20
B9B N7 C8 DOUB Y N 21
B9B "C3'" "C4'" SING N N 22
B9B "O4'" "C4'" SING N N 23
B9B "C4'" "C5'" SING N N 24
B9B "O5'" "C5'" SING N N 25
B9B "O5'" P SING N N 26
B9B OP1 P DOUB N N 27
B9B P OP2 SING N N 28
B9B C8 H1 SING N N 29
B9B "C1'" H2 SING N N 30
B9B "C2'" H3 SING N N 31
B9B "C3'" H4 SING N N 32
B9B "C4'" H5 SING N N 33
B9B "C5'" H6 SING N N 34
B9B "C5'" H7 SING N N 35
B9B N2 H8 SING N N 36
B9B N2 H9 SING N N 37
B9B "O2'" H10 SING N N 38
B9B "O3'" H11 SING N N 39
B9B OP2 H13 SING N N 40
B9B C61 H14 SING N N 41
B9B C61 H15 SING N N 42
B9B C62 H16 SING N N 43
B9B C62 H17 SING N N 44
B9B C63 H18 SING N N 45
B9B C63 H19 SING N N 46
B9B C63 H20 SING N N 47
B9B P OP3 SING N N 48
B9B OP3 H12 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B9B InChI InChI 1.03 InChI=1S/C13H20N5O8P/c1-2-3-24-11-7-10(16-13(14)17-11)18(5-15-7)12-9(20)8(19)6(26-12)4-25-27(21,22)23/h5-6,8-9,12,19-20H,2-4H2,1H3,(H2,14,16,17)(H2,21,22,23)/t6-,8-,9-,12-/m1/s1
B9B InChIKey InChI 1.03 BEBGGMIXLKQJTH-WOUKDFQISA-N
B9B SMILES_CANONICAL CACTVS 3.385 CCCOc1nc(N)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
B9B SMILES CACTVS 3.385 CCCOc1nc(N)nc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
B9B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCOc1c2c(nc(n1)N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O
B9B SMILES "OpenEye OEToolkits" 2.0.6 CCCOc1c2c(nc(n1)N)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O
#
_pdbx_chem_comp_identifier.comp_id B9B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-propoxy-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B9B 'Create component' 2017-09-25 EBI
B9B 'Initial release' 2018-01-24 RCSB
B9B 'Modify one letter code' 2019-04-29 EBI
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
B9B C2 C 5.104 -1.823 1
B9B C5 C 7.702 -3.322 2
B9B C6 C 6.404 -4.072 3
B9B C8 C 9.997 -2.572 4
B9B "C1'" C 9.588 0.060 5
B9B "C2'" C 11.015 0.521 6
B9B "C3'" C 11.018 2.021 7
B9B C4 C 7.702 -1.823 8
B9B "C4'" C 9.592 2.487 9
B9B "C5'" C 9.131 3.915 10
B9B N1 N 5.104 -3.322 11
B9B N2 N 3.805 -1.073 12
B9B N3 N 6.404 -1.073 13
B9B N7 N 9.122 -3.780 14
B9B N9 N 9.122 -1.365 15
B9B "O2'" O 12.227 -0.362 16
B9B "O3'" O 12.233 2.901 17
B9B "O4'" O 8.708 1.275 18
B9B "O5'" O 10.136 5.028 19
B9B O6 O 6.404 -5.572 20
B9B OP1 O 9.214 7.883 21
B9B OP2 O 11.103 6.916 22
B9B P P 9.676 6.455 23
B9B C61 C 5.104 -6.322 24
B9B C62 C 5.104 -7.822 25
B9B C63 C 3.805 -8.572 26
B9B OP3 O 8.248 5.994 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
B9B "C2'" "O2'" SINGLE BEGINWEDGE 1
B9B C61 C62 SINGLE NONE 2
B9B C61 O6 SINGLE NONE 3
B9B N2 C2 SINGLE NONE 4
B9B C2 N1 DOUBLE NONE 5
B9B C2 N3 SINGLE NONE 6
B9B N1 C6 SINGLE NONE 7
B9B C62 C63 SINGLE NONE 8
B9B N3 C4 DOUBLE NONE 9
B9B C6 O6 SINGLE NONE 10
B9B C6 C5 DOUBLE NONE 11
B9B "C2'" "C1'" SINGLE NONE 12
B9B "C2'" "C3'" SINGLE NONE 13
B9B "C3'" "O3'" SINGLE BEGINWEDGE 14
B9B C4 C5 SINGLE NONE 15
B9B C4 N9 SINGLE NONE 16
B9B C5 N7 SINGLE NONE 17
B9B "C1'" N9 SINGLE BEGINDASH 18
B9B N9 C8 SINGLE NONE 19
B9B "C1'" "O4'" SINGLE NONE 20
B9B N7 C8 DOUBLE NONE 21
B9B "C3'" "C4'" SINGLE NONE 22
B9B "O4'" "C4'" SINGLE NONE 23
B9B "C4'" "C5'" SINGLE BEGINDASH 24
B9B "O5'" "C5'" SINGLE NONE 25
B9B "O5'" P SINGLE NONE 26
B9B OP1 P DOUBLE NONE 27
B9B P OP2 SINGLE NONE 28
B9B P OP3 SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
B9B MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
B9B guanine F1 fragment 'Nc1nc(O)c2[nH]cnc2n1' InChI=1S/C5H5N5O/c6-5-9-3-2(4(11)10-5)7-1-8-3/h1H,(H4,6,7,8,9,10,11) UYTPUPDQBNUYGX-UHFFFAOYSA-N
B9B imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
B9B inosine F3 fragment 'Oc1ncnc2nc[nH]c12' InChI=1S/C5H4N4O/c10-5-3-4(7-1-6-3)8-2-9-5/h1-2H,(H2,6,7,8,9,10) FDGQSTZJBFJUBT-UHFFFAOYSA-N
B9B phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
B9B purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
B9B pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
B9B ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
B9B C2 S1 1
B9B C5 S1 1
B9B C6 S1 1
B9B C8 S1 1
B9B "C1'" S1 1
B9B "C2'" S1 1
B9B "C3'" S1 1
B9B C4 S1 1
B9B "C4'" S1 1
B9B N1 S1 1
B9B N3 S1 1
B9B N7 S1 1
B9B N9 S1 1
B9B "O4'" S1 1
B9B C2 F1 1
B9B N1 F1 1
B9B C6 F1 1
B9B C5 F1 1
B9B C4 F1 1
B9B N3 F1 1
B9B N9 F1 1
B9B C8 F1 1
B9B N7 F1 1
B9B O6 F1 1
B9B N2 F1 1
B9B C5 F2 1
B9B C4 F2 1
B9B N9 F2 1
B9B C8 F2 1
B9B N7 F2 1
B9B C2 F3 1
B9B N1 F3 1
B9B C6 F3 1
B9B C5 F3 1
B9B C4 F3 1
B9B N3 F3 1
B9B N9 F3 1
B9B C8 F3 1
B9B N7 F3 1
B9B O6 F3 1
B9B "O5'" F4 1
B9B P F4 1
B9B OP1 F4 1
B9B OP2 F4 1
B9B H1 F4 1
B9B N7 F5 1
B9B C8 F5 1
B9B N9 F5 1
B9B C4 F5 1
B9B C5 F5 1
B9B C6 F5 1
B9B N1 F5 1
B9B C2 F5 1
B9B N3 F5 1
B9B C5 F6 1
B9B C6 F6 1
B9B N1 F6 1
B9B C2 F6 1
B9B N3 F6 1
B9B C4 F6 1
B9B "C2'" F7 1
B9B "C3'" F7 1
B9B "C4'" F7 1
B9B "O4'" F7 1
B9B "C1'" F7 1
B9B "C5'" F7 1
B9B "O5'" F7 1
B9B "O3'" F7 1
B9B "O2'" F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id B9B
_pdbe_chem_comp_rdkit_properties.exactmw 405.105
_pdbe_chem_comp_rdkit_properties.amw 405.304
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.615
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 181.074
_pdbe_chem_comp_rdkit_properties.tpsa 195.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.346
_pdbe_chem_comp_rdkit_properties.CrippenMR 85.801
_pdbe_chem_comp_rdkit_properties.chi0v 13.344
_pdbe_chem_comp_rdkit_properties.chi1v 7.856
_pdbe_chem_comp_rdkit_properties.chi2v 3.068
_pdbe_chem_comp_rdkit_properties.chi3v 3.068
_pdbe_chem_comp_rdkit_properties.chi4v 1.996
_pdbe_chem_comp_rdkit_properties.chi0n 32.449
_pdbe_chem_comp_rdkit_properties.chi1n 15.923
_pdbe_chem_comp_rdkit_properties.chi2n 2.753
_pdbe_chem_comp_rdkit_properties.chi3n 2.753
_pdbe_chem_comp_rdkit_properties.chi4n 1.801
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.860
_pdbe_chem_comp_rdkit_properties.kappa1 6.593
_pdbe_chem_comp_rdkit_properties.kappa2 7.637
_pdbe_chem_comp_rdkit_properties.kappa3 4.190
_pdbe_chem_comp_rdkit_properties.Phi 1.865
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
B9B UniChem PDBe B9B
B9B UniChem PubChem 137348991
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
B9B C2 -2.280 0.813 -1.503 ETKDGv3 1
B9B C5 -2.017 0.281 1.172 ETKDGv3 2
B9B C6 -3.226 0.204 0.628 ETKDGv3 3
B9B C8 -0.336 0.436 2.529 ETKDGv3 4
B9B "C1'" 1.453 1.503 0.990 ETKDGv3 5
B9B "C2'" 2.629 0.946 1.788 ETKDGv3 6
B9B "C3'" 3.799 1.154 0.857 ETKDGv3 7
B9B C4 -0.896 0.641 0.388 ETKDGv3 8
B9B "C4'" 3.137 1.125 -0.524 ETKDGv3 9
B9B "C5'" 3.223 -0.260 -1.179 ETKDGv3 10
B9B N1 -3.332 0.477 -0.791 ETKDGv3 11
B9B N2 -2.421 1.078 -2.897 ETKDGv3 12
B9B N3 -0.979 0.922 -0.877 ETKDGv3 13
B9B N7 -1.616 0.167 2.528 ETKDGv3 14
B9B N9 0.238 0.722 1.232 ETKDGv3 15
B9B "O2'" 2.786 1.630 3.004 ETKDGv3 16
B9B "O3'" 4.445 2.387 1.085 ETKDGv3 17
B9B "O4'" 1.777 1.481 -0.386 ETKDGv3 18
B9B "O5'" 4.570 -0.566 -1.458 ETKDGv3 19
B9B O6 -4.343 -0.114 1.407 ETKDGv3 20
B9B OP1 3.881 -2.160 -3.446 ETKDGv3 21
B9B OP2 6.255 -2.530 -2.431 ETKDGv3 22
B9B P 4.639 -2.129 -2.138 ETKDGv3 23
B9B C61 -5.657 -0.280 0.874 ETKDGv3 24
B9B C62 -5.938 -1.749 0.544 ETKDGv3 25
B9B C63 -5.115 -2.256 -0.637 ETKDGv3 26
B9B H1 0.241 0.458 3.444 ETKDGv3 27
B9B H2 1.262 2.560 1.281 ETKDGv3 28
B9B H3 2.488 -0.147 1.969 ETKDGv3 29
B9B H4 4.546 0.340 0.988 ETKDGv3 30
B9B H5 3.630 1.858 -1.200 ETKDGv3 31
B9B H6 2.772 -1.010 -0.489 ETKDGv3 32
B9B H7 2.632 -0.231 -2.123 ETKDGv3 33
B9B H8 -3.353 1.003 -3.360 ETKDGv3 34
B9B H9 -1.588 1.347 -3.466 ETKDGv3 35
B9B H10 3.454 1.118 3.530 ETKDGv3 36
B9B H11 3.784 3.116 0.949 ETKDGv3 37
B9B H13 6.702 -2.435 -1.552 ETKDGv3 38
B9B H14 -6.382 0.042 1.650 ETKDGv3 39
B9B H15 -5.819 0.369 -0.014 ETKDGv3 40
B9B H16 -7.016 -1.857 0.296 ETKDGv3 41
B9B H17 -5.728 -2.377 1.437 ETKDGv3 42
B9B H18 -5.270 -1.608 -1.526 ETKDGv3 43
B9B H19 -4.036 -2.282 -0.378 ETKDGv3 44
B9B H20 -5.434 -3.288 -0.894 ETKDGv3 45
B9B OP3 3.971 -3.263 -1.072 ETKDGv3 46
B9B H12 4.474 -3.142 -0.228 ETKDGv3 47
#