data_B9I
#
_chem_comp.id B9I
_chem_comp.name
"(2~{S},3~{S},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(1~{R})-6'-oxidanyl-3-oxidanylidene-spiro[2-benzofuran-1,9'-xanthene]-3'-yl]oxy-oxane-2-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H20 O11"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-12-07
_chem_comp.pdbx_modified_date 2022-10-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 508.430
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B9I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7QEA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B9I C2 C1 C 0 1 N N R N N N 9.735 -19.325 35.380 -2.784 -0.336 -0.472 C2 B9I 1
B9I C4 C2 C 0 1 Y N N N N N 8.327 -17.831 33.899 -3.616 1.821 0.512 C4 B9I 2
B9I C5 C3 C 0 1 Y N N N N N 10.638 -17.371 34.037 -1.297 1.451 0.482 C5 B9I 3
B9I C6 C4 C 0 1 Y N N N N N 10.866 -18.447 34.883 -1.429 0.278 -0.243 C6 B9I 4
B9I O6 O1 O 0 1 N N N N N N 11.601 -13.049 33.712 3.916 -2.380 1.526 O6 B9I 5
B9I C8 C5 C 0 1 Y N N N N N 13.238 -17.906 34.716 0.945 0.204 -0.570 C8 B9I 6
B9I O8 O2 O 0 1 N N N N N N 14.303 -11.229 33.993 7.027 -0.878 -0.459 O8 B9I 7
B9I O2 O3 O 0 1 N N N N N N 10.088 -20.755 35.055 -2.878 -0.805 -1.850 O2 B9I 8
B9I O4 O4 O 0 1 N N N N N N 13.879 -15.962 33.336 2.316 1.919 0.348 O4 B9I 9
B9I C7 C6 C 0 1 Y N N N N N 12.214 -18.697 35.197 -0.307 -0.343 -0.766 C7 B9I 10
B9I C1 C7 C 0 1 N N N N N N 10.602 -21.357 36.172 -3.090 -2.136 -1.850 C1 B9I 11
B9I C10 C8 C 0 1 N N S N N N 14.838 -15.378 34.195 3.425 1.223 -0.223 C10 B9I 12
B9I C11 C9 C 0 1 N N R N N N 15.810 -14.596 33.310 4.704 2.037 -0.008 C11 B9I 13
B9I C12 C10 C 0 1 N N S N N N 15.776 -13.121 33.611 5.897 1.258 -0.569 C12 B9I 14
B9I C13 C11 C 0 1 N N S N N N 14.335 -12.636 33.731 5.961 -0.114 0.108 C13 B9I 15
B9I C14 C12 C 0 1 N N S N N N 13.632 -13.349 34.895 4.634 -0.845 -0.111 C14 B9I 16
B9I C15 C13 C 0 1 N N N N N N 12.110 -13.421 34.734 4.667 -2.172 0.603 C15 B9I 17
B9I C16 C14 C 0 1 Y N N N N N 11.639 -16.561 33.542 -0.037 2.001 0.680 C16 B9I 18
B9I C17 C15 C 0 1 Y N N N N N 7.142 -17.452 33.302 -4.636 2.737 0.740 C17 B9I 19
B9I C18 C16 C 0 1 Y N N N N N 6.007 -18.201 33.523 -5.908 2.495 0.248 C18 B9I 20
B9I C25 C17 C 0 1 Y N N N N N 6.063 -19.323 34.339 -6.162 1.337 -0.473 C25 B9I 21
B9I C26 C18 C 0 1 Y N N N N N 7.258 -19.680 34.926 -5.147 0.429 -0.700 C26 B9I 22
B9I C27 C19 C 0 1 Y N N N N N 9.569 -19.434 36.883 -2.965 -1.543 0.394 C27 B9I 23
B9I C28 C20 C 0 1 Y N N N N N 10.074 -20.643 37.330 -3.151 -2.634 -0.476 C28 B9I 24
B9I C29 C21 C 0 1 Y N N N N N 10.029 -21.020 38.673 -3.351 -3.923 0.025 C29 B9I 25
B9I C3 C22 C 0 1 Y N N N N N 8.439 -18.950 34.709 -3.875 0.668 -0.210 C3 B9I 26
B9I C30 C23 C 0 1 Y N N N N N 9.438 -20.135 39.546 -3.356 -4.064 1.404 C30 B9I 27
B9I C31 C24 C 0 1 Y N N N N N 8.907 -18.930 39.109 -3.172 -2.987 2.249 C31 B9I 28
B9I C32 C25 C 0 1 Y N N N N N 8.941 -18.560 37.775 -2.971 -1.699 1.762 C32 B9I 29
B9I C9 C26 C 0 1 Y N N N N N 12.947 -16.826 33.884 1.083 1.380 0.154 C9 B9I 30
B9I O1 O5 O 0 1 N N N N N N 11.307 -22.348 36.111 -3.213 -2.822 -2.845 O1 B9I 31
B9I O10 O6 O 0 1 N N N N N N 17.125 -15.130 33.435 4.591 3.291 -0.685 O10 B9I 32
B9I O11 O7 O 0 1 N N N N N N 4.837 -17.793 32.912 -6.906 3.391 0.472 O11 B9I 33
B9I O3 O8 O 0 1 N N N N N N 9.385 -17.000 33.611 -2.380 2.075 1.004 O3 B9I 34
B9I O5 O9 O 0 1 N N N N N N 11.425 -13.819 35.662 5.531 -3.122 0.214 O5 B9I 35
B9I O7 O10 O 0 1 N N N N N N 14.229 -14.609 35.230 3.563 -0.053 0.406 O7 B9I 36
B9I O9 O11 O 0 1 N N N N N N 16.477 -12.423 32.580 7.104 1.977 -0.308 O9 B9I 37
B9I H1 H1 H 0 1 N N N N N N 14.262 -18.123 34.983 1.817 -0.284 -0.980 H1 B9I 38
B9I H2 H2 H 0 1 N N N N N N 13.401 -10.940 34.065 7.126 -1.760 -0.076 H2 B9I 39
B9I H3 H3 H 0 1 N N N N N N 12.456 -19.534 35.835 -0.413 -1.258 -1.329 H3 B9I 40
B9I H4 H4 H 0 1 N N N N N N 15.416 -16.187 34.666 3.257 1.085 -1.291 H4 B9I 41
B9I H5 H5 H 0 1 N N N N N N 15.478 -14.727 32.269 4.850 2.211 1.058 H5 B9I 42
B9I H6 H6 H 0 1 N N N N N N 16.277 -12.951 34.575 5.774 1.128 -1.645 H6 B9I 43
B9I H7 H7 H 0 1 N N N N N N 13.800 -12.864 32.797 6.134 0.015 1.177 H7 B9I 44
B9I H8 H8 H 0 1 N N N N N N 13.794 -12.696 35.765 4.482 -1.010 -1.178 H8 B9I 45
B9I H9 H9 H 0 1 N N N N N N 11.400 -15.730 32.895 0.069 2.916 1.244 H9 B9I 46
B9I H10 H10 H 0 1 N N N N N N 7.105 -16.578 32.669 -4.437 3.637 1.302 H10 B9I 47
B9I H11 H11 H 0 1 N N N N N N 5.175 -19.913 34.513 -7.154 1.145 -0.857 H11 B9I 48
B9I H12 H12 H 0 1 N N N N N N 7.287 -20.546 35.571 -5.347 -0.472 -1.261 H12 B9I 49
B9I H13 H13 H 0 1 N N N N N N 10.438 -21.961 39.011 -3.496 -4.769 -0.631 H13 B9I 50
B9I H14 H14 H 0 1 N N N N N N 9.386 -20.384 40.596 -3.508 -5.045 1.830 H14 B9I 51
B9I H15 H15 H 0 1 N N N N N N 8.455 -18.263 39.828 -3.185 -3.149 3.316 H15 B9I 52
B9I H16 H16 H 0 1 N N N N N N 8.500 -17.634 37.437 -2.828 -0.860 2.427 H16 B9I 53
B9I H17 H17 H 0 1 N N N N N N 17.110 -16.059 33.239 3.855 3.838 -0.379 H17 B9I 54
B9I H18 H18 H 0 1 N N N N N N 4.134 -18.389 33.143 -6.985 4.069 -0.212 H18 B9I 55
B9I H19 H19 H 0 1 N N N N N N 10.507 -13.773 35.421 5.516 -3.957 0.702 H19 B9I 56
B9I H20 H20 H 0 1 N N N N N N 16.461 -11.491 32.761 7.129 2.860 -0.702 H20 B9I 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B9I O9 C12 SING N N 1
B9I O11 C18 SING N N 2
B9I C17 C18 DOUB Y N 3
B9I C17 C4 SING Y N 4
B9I C11 O10 SING N N 5
B9I C11 C12 SING N N 6
B9I C11 C10 SING N N 7
B9I O4 C9 SING N N 8
B9I O4 C10 SING N N 9
B9I C18 C25 SING Y N 10
B9I C16 C9 DOUB Y N 11
B9I C16 C5 SING Y N 12
B9I O3 C4 SING N N 13
B9I O3 C5 SING N N 14
B9I C12 C13 SING N N 15
B9I O6 C15 DOUB N N 16
B9I C13 O8 SING N N 17
B9I C13 C14 SING N N 18
B9I C9 C8 SING Y N 19
B9I C4 C3 DOUB Y N 20
B9I C5 C6 DOUB Y N 21
B9I C10 O7 SING N N 22
B9I C25 C26 DOUB Y N 23
B9I C3 C26 SING Y N 24
B9I C3 C2 SING N N 25
B9I C8 C7 DOUB Y N 26
B9I C15 C14 SING N N 27
B9I C15 O5 SING N N 28
B9I C6 C7 SING Y N 29
B9I C6 C2 SING N N 30
B9I C14 O7 SING N N 31
B9I O2 C2 SING N N 32
B9I O2 C1 SING N N 33
B9I C2 C27 SING N N 34
B9I O1 C1 DOUB N N 35
B9I C1 C28 SING N N 36
B9I C27 C28 DOUB Y N 37
B9I C27 C32 SING Y N 38
B9I C28 C29 SING Y N 39
B9I C32 C31 DOUB Y N 40
B9I C29 C30 DOUB Y N 41
B9I C31 C30 SING Y N 42
B9I C8 H1 SING N N 43
B9I O8 H2 SING N N 44
B9I C7 H3 SING N N 45
B9I C10 H4 SING N N 46
B9I C11 H5 SING N N 47
B9I C12 H6 SING N N 48
B9I C13 H7 SING N N 49
B9I C14 H8 SING N N 50
B9I C16 H9 SING N N 51
B9I C17 H10 SING N N 52
B9I C25 H11 SING N N 53
B9I C26 H12 SING N N 54
B9I C29 H13 SING N N 55
B9I C30 H14 SING N N 56
B9I C31 H15 SING N N 57
B9I C32 H16 SING N N 58
B9I O10 H17 SING N N 59
B9I O11 H18 SING N N 60
B9I O5 H19 SING N N 61
B9I O9 H20 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B9I InChI InChI 1.06 InChI=1S/C26H20O11/c27-11-5-7-15-17(9-11)35-18-10-12(34-25-21(30)19(28)20(29)22(36-25)23(31)32)6-8-16(18)26(15)14-4-2-1-3-13(14)24(33)37-26/h1-10,19-22,25,27-30H,(H,31,32)/t19-,20-,21+,22-,25+,26+/m0/s1
B9I InChIKey InChI 1.06 RSSKCAKCONQQRX-MDPQNUMESA-N
B9I SMILES_CANONICAL CACTVS 3.385 O[C@@H]1[C@@H](O)[C@@H](O[C@@H]([C@H]1O)C(O)=O)Oc2ccc3c(Oc4cc(O)ccc4[C@@]35OC(=O)c6ccccc56)c2
B9I SMILES CACTVS 3.385 O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)Oc2ccc3c(Oc4cc(O)ccc4[C]35OC(=O)c6ccccc56)c2
B9I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)C(=O)O[C@@]23c4ccc(cc4Oc5c3ccc(c5)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)C(=O)O)O)O)O)O
B9I SMILES "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)C(=O)OC23c4ccc(cc4Oc5c3ccc(c5)OC6C(C(C(C(O6)C(=O)O)O)O)O)O
#
_pdbx_chem_comp_identifier.comp_id B9I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{S},3~{S},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(1~{R})-6'-oxidanyl-3-oxidanylidene-spiro[2-benzofuran-1,9'-xanthene]-3'-yl]oxy-oxane-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B9I 'Create component' 2021-12-07 PDBE
B9I 'Modify descriptor' 2022-08-22 RCSB
B9I 'Initial release' 2022-10-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
B9I C2 C 10.342 3.369 1
B9I C4 C 12.940 3.359 2
B9I C5 C 11.633 1.114 3
B9I C6 C 10.336 1.869 4
B9I O6 O 3.805 -3.485 5
B9I C8 C 8.950 -0.449 6
B9I O8 O 5.104 -5.735 7
B9I O2 O 8.970 2.764 8
B9I O4 O 10.301 -2.735 9
B9I C7 C 8.969 1.114 10
B9I C1 C 7.970 3.882 11
B9I C10 C 9.002 -3.485 12
B9I C11 C 9.002 -4.985 13
B9I C12 C 7.702 -5.735 14
B9I C13 C 6.404 -4.985 15
B9I C14 C 6.404 -3.485 16
B9I C15 C 5.104 -2.735 17
B9I C16 C 11.651 -0.449 18
B9I C17 C 14.308 4.114 19
B9I C18 C 14.326 5.676 20
B9I C25 C 12.976 6.463 21
B9I C26 C 11.626 5.676 22
B9I C27 C 10.191 4.861 23
B9I C28 C 8.725 5.179 24
B9I C29 C 7.552 6.211 25
B9I C3 C 11.644 4.114 26
B9I C30 C 7.883 7.482 27
B9I C31 C 9.384 7.700 28
B9I C32 C 10.546 6.383 29
B9I C9 C 10.301 -1.235 30
B9I O1 O 6.478 3.731 31
B9I O10 O 10.301 -5.735 32
B9I O11 O 15.631 6.416 33
B9I O3 O 12.934 1.859 34
B9I O5 O 5.104 -1.235 35
B9I O7 O 7.702 -2.735 36
B9I O9 O 7.702 -7.235 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
B9I C12 O9 SINGLE BEGINWEDGE 1
B9I O11 C18 SINGLE NONE 2
B9I C17 C18 DOUBLE NONE 3
B9I C17 C4 SINGLE NONE 4
B9I C11 O10 SINGLE BEGINDASH 5
B9I C11 C12 SINGLE NONE 6
B9I C11 C10 SINGLE NONE 7
B9I O4 C9 SINGLE NONE 8
B9I C10 O4 SINGLE BEGINWEDGE 9
B9I C18 C25 SINGLE NONE 10
B9I C16 C9 SINGLE NONE 11
B9I C16 C5 DOUBLE NONE 12
B9I O3 C4 SINGLE NONE 13
B9I O3 C5 SINGLE NONE 14
B9I C12 C13 SINGLE NONE 15
B9I O6 C15 DOUBLE NONE 16
B9I C13 O8 SINGLE BEGINDASH 17
B9I C13 C14 SINGLE NONE 18
B9I C9 C8 DOUBLE NONE 19
B9I C4 C3 DOUBLE NONE 20
B9I C5 C6 SINGLE NONE 21
B9I C10 O7 SINGLE NONE 22
B9I C25 C26 DOUBLE NONE 23
B9I C3 C26 SINGLE NONE 24
B9I C3 C2 SINGLE NONE 25
B9I C8 C7 SINGLE NONE 26
B9I C14 C15 SINGLE BEGINWEDGE 27
B9I C15 O5 SINGLE NONE 28
B9I C6 C7 DOUBLE NONE 29
B9I C6 C2 SINGLE NONE 30
B9I C14 O7 SINGLE NONE 31
B9I C2 O2 SINGLE BEGINDASH 32
B9I O2 C1 SINGLE NONE 33
B9I C2 C27 SINGLE NONE 34
B9I O1 C1 DOUBLE NONE 35
B9I C1 C28 SINGLE NONE 36
B9I C27 C28 DOUBLE NONE 37
B9I C27 C32 SINGLE NONE 38
B9I C28 C29 SINGLE NONE 39
B9I C32 C31 DOUBLE NONE 40
B9I C29 C30 DOUBLE NONE 41
B9I C31 C30 SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
B9I MurckoScaffold S1 scaffold 'O=C1O[C@@]2(c3ccccc3Oc3cc(O[C@H]4CCCCO4)ccc32)c2ccccc21' InChI=1S/C25H20O5/c26-24-17-7-1-2-8-18(17)25(30-24)19-9-3-4-10-21(19)29-22-15-16(12-13-20(22)25)28-23-11-5-6-14-27-23/h1-4,7-10,12-13,15,23H,5-6,11,14H2/t23-,25+/m0/s1 YATPGZMLFPLTTB-UKILVPOCSA-N
B9I phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
B9I pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
B9I xanthen F3 fragment c1ccc2c(c1)Cc1ccccc1O2 InChI=1S/C13H10O/c1-3-7-12-10(5-1)9-11-6-2-4-8-13(11)14-12/h1-8H,9H2 GJCOSYZMQJWQCA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
B9I C2 S1 1
B9I C4 S1 1
B9I C5 S1 1
B9I C6 S1 1
B9I C8 S1 1
B9I O2 S1 1
B9I O4 S1 1
B9I C7 S1 1
B9I C1 S1 1
B9I C10 S1 1
B9I C11 S1 1
B9I C12 S1 1
B9I C13 S1 1
B9I C14 S1 1
B9I C16 S1 1
B9I C17 S1 1
B9I C18 S1 1
B9I C25 S1 1
B9I C26 S1 1
B9I C27 S1 1
B9I C28 S1 1
B9I C29 S1 1
B9I C3 S1 1
B9I C30 S1 1
B9I C31 S1 1
B9I C32 S1 1
B9I C9 S1 1
B9I O1 S1 1
B9I O3 S1 1
B9I O7 S1 1
B9I C4 F1 1
B9I C17 F1 1
B9I C18 F1 1
B9I C25 F1 1
B9I C26 F1 1
B9I C3 F1 1
B9I C5 F1 2
B9I C16 F1 2
B9I C9 F1 2
B9I C8 F1 2
B9I C7 F1 2
B9I C6 F1 2
B9I C27 F1 3
B9I C28 F1 3
B9I C29 F1 3
B9I C30 F1 3
B9I C31 F1 3
B9I C32 F1 3
B9I C13 F2 1
B9I C14 F2 1
B9I O7 F2 1
B9I C10 F2 1
B9I C11 F2 1
B9I C12 F2 1
B9I O4 F2 1
B9I C8 F3 1
B9I C9 F3 1
B9I C16 F3 1
B9I C5 F3 1
B9I C6 F3 1
B9I C7 F3 1
B9I C2 F3 1
B9I C3 F3 1
B9I C4 F3 1
B9I O3 F3 1
B9I C17 F3 1
B9I C18 F3 1
B9I C25 F3 1
B9I C26 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id B9I
_pdbe_chem_comp_rdkit_properties.exactmw 508.101
_pdbe_chem_comp_rdkit_properties.amw 508.435
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 57
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.231
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 236.729
_pdbe_chem_comp_rdkit_properties.tpsa 172.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.837
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.804
_pdbe_chem_comp_rdkit_properties.chi0v 17.491
_pdbe_chem_comp_rdkit_properties.chi1v 9.812
_pdbe_chem_comp_rdkit_properties.chi2v 5.287
_pdbe_chem_comp_rdkit_properties.chi3v 5.287
_pdbe_chem_comp_rdkit_properties.chi4v 3.774
_pdbe_chem_comp_rdkit_properties.chi0n 37.491
_pdbe_chem_comp_rdkit_properties.chi1n 19.353
_pdbe_chem_comp_rdkit_properties.chi2n 5.287
_pdbe_chem_comp_rdkit_properties.chi3n 5.287
_pdbe_chem_comp_rdkit_properties.chi4n 3.774
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.160
_pdbe_chem_comp_rdkit_properties.kappa1 9.952
_pdbe_chem_comp_rdkit_properties.kappa2 8.181
_pdbe_chem_comp_rdkit_properties.kappa3 3.361
_pdbe_chem_comp_rdkit_properties.Phi 2.200
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
B9I UniChem PDBe B9I
B9I UniChem ZINC ZINC000118306139
B9I UniChem PubChem 129380043
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
B9I C2 -2.715 -0.523 0.639 ETKDGv3 1
B9I C4 -2.594 -1.825 -1.517 ETKDGv3 2
B9I C5 -0.605 -0.568 -0.848 ETKDGv3 3
B9I C6 -1.259 -0.165 0.414 ETKDGv3 4
B9I O6 4.253 1.319 -2.995 ETKDGv3 5
B9I C8 0.831 0.957 1.032 ETKDGv3 6
B9I O8 7.203 0.494 0.716 ETKDGv3 7
B9I O2 -2.889 -1.060 1.958 ETKDGv3 8
B9I O4 2.746 0.937 -0.452 ETKDGv3 9
B9I C7 -0.566 0.565 1.308 ETKDGv3 10
B9I C1 -3.728 -0.229 2.686 ETKDGv3 11
B9I C10 3.706 1.553 0.415 ETKDGv3 12
B9I C11 4.180 0.581 1.518 ETKDGv3 13
B9I C12 5.029 -0.554 0.919 ETKDGv3 14
B9I C13 6.114 -0.004 -0.026 ETKDGv3 15
B9I C14 5.560 1.075 -1.001 ETKDGv3 16
B9I C15 4.841 0.525 -2.212 ETKDGv3 17
B9I C16 0.657 -0.202 -1.105 ETKDGv3 18
B9I C17 -3.209 -2.724 -2.519 ETKDGv3 19
B9I C18 -4.436 -3.221 -2.325 ETKDGv3 20
B9I C25 -5.184 -2.870 -1.101 ETKDGv3 21
B9I C26 -4.639 -2.057 -0.190 ETKDGv3 22
B9I C27 -3.562 0.730 0.679 ETKDGv3 23
B9I C28 -4.134 0.881 1.863 ETKDGv3 24
B9I C29 -5.011 2.024 2.163 ETKDGv3 25
B9I C3 -3.275 -1.496 -0.392 ETKDGv3 26
B9I C30 -5.226 2.931 1.194 ETKDGv3 27
B9I C31 -4.586 2.771 -0.143 ETKDGv3 28
B9I C32 -3.788 1.718 -0.394 ETKDGv3 29
B9I C9 1.424 0.593 -0.123 ETKDGv3 30
B9I O1 -4.071 -0.431 3.880 ETKDGv3 31
B9I O10 4.929 1.275 2.482 ETKDGv3 32
B9I O11 -4.998 -4.067 -3.278 ETKDGv3 33
B9I O3 -1.305 -1.345 -1.768 ETKDGv3 34
B9I O5 4.861 -0.835 -2.506 ETKDGv3 35
B9I O7 4.796 2.074 -0.335 ETKDGv3 36
B9I O9 4.207 -1.450 0.215 ETKDGv3 37
B9I H1 1.348 1.547 1.774 ETKDGv3 38
B9I H2 6.967 1.395 1.055 ETKDGv3 39
B9I H3 -1.026 0.892 2.232 ETKDGv3 40
B9I H4 3.224 2.427 0.902 ETKDGv3 41
B9I H5 3.299 0.120 2.019 ETKDGv3 42
B9I H6 5.534 -1.106 1.747 ETKDGv3 43
B9I H7 6.516 -0.854 -0.620 ETKDGv3 44
B9I H8 6.451 1.590 -1.421 ETKDGv3 45
B9I H9 1.130 -0.503 -2.032 ETKDGv3 46
B9I H10 -2.657 -2.979 -3.414 ETKDGv3 47
B9I H11 -6.178 -3.268 -0.942 ETKDGv3 48
B9I H12 -5.206 -1.804 0.697 ETKDGv3 49
B9I H13 -5.471 2.131 3.137 ETKDGv3 50
B9I H14 -5.866 3.783 1.383 ETKDGv3 51
B9I H15 -4.767 3.508 -0.915 ETKDGv3 52
B9I H16 -3.321 1.596 -1.363 ETKDGv3 53
B9I H17 4.284 1.795 3.029 ETKDGv3 54
B9I H18 -5.925 -4.455 -3.152 ETKDGv3 55
B9I H19 4.387 -1.198 -3.325 ETKDGv3 56
B9I H20 3.721 -1.991 0.891 ETKDGv3 57
#