data_BB9
#
_chem_comp.id BB9
_chem_comp.name "(2Z)-2-amino-3-sulfanylprop-2-enoic acid"
_chem_comp.type "PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C3 H5 N O2 S"
_chem_comp.mon_nstd_parent_comp_id CYS
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-01-15
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 119.142
_chem_comp.one_letter_code C
_chem_comp.three_letter_code BB9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2C77
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BB9 N N N 0 1 N N N Y Y N 11.766 -4.900 26.521 -0.059 1.606 0.000 N BB9 1
BB9 CA CA C 0 1 N N N Y N N 12.260 -5.822 27.400 0.210 0.221 0.000 CA BB9 2
BB9 C C C 0 1 N N N Y N Y 11.415 -6.389 28.570 1.547 -0.240 0.000 C BB9 3
BB9 O O O 0 1 N N N Y N Y 11.725 -7.408 29.179 1.779 -1.435 -0.000 O BB9 4
BB9 CB CB C 0 1 N N N N N N 13.557 -6.167 27.168 -0.812 -0.667 -0.000 CB BB9 5
BB9 SG SG S 0 1 N N N N N N 14.146 -5.297 25.814 -2.478 -0.093 0.000 SG BB9 6
BB9 OXT OXT O 0 1 N Y N Y N Y 10.363 -5.625 28.845 2.567 0.645 0.000 OXT BB9 7
BB9 H HN1 H 0 1 N N N Y Y N 11.645 -4.024 26.989 0.673 2.242 0.000 HN1 BB9 8
BB9 H2 HN2 H 0 1 N Y N Y Y N 12.407 -4.787 25.762 -0.976 1.922 -0.004 HN2 BB9 9
BB9 HB HB H 0 1 N N N N N N 14.126 -6.879 27.748 -0.606 -1.727 -0.000 HB BB9 10
BB9 HXT HXT H 0 1 N Y N Y N Y 9.891 -5.990 29.584 3.443 0.236 0.000 HXT BB9 11
BB9 HG HG H 0 1 N N N N N N 14.295 -4.046 26.134 -3.161 -1.326 -0.000 HG BB9 12
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BB9 N CA SING N N 1
BB9 CA C SING N N 2
BB9 CA CB DOUB N N 3
BB9 C O DOUB N N 4
BB9 C OXT SING N Z 5
BB9 CB SG SING N N 6
BB9 N H SING N N 7
BB9 N H2 SING N N 8
BB9 CB HB SING N N 9
BB9 OXT HXT SING N N 10
BB9 SG HG SING N N 11
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BB9 SMILES ACDLabs 10.04 O=C(O)/C(N)=C/S
BB9 SMILES_CANONICAL CACTVS 3.352 N\C(=C/S)C(O)=O
BB9 SMILES CACTVS 3.352 NC(=CS)C(O)=O
BB9 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 C(=C(\C(=O)O)/N)/S
BB9 SMILES "OpenEye OEToolkits" 1.6.1 C(=C(C(=O)O)N)S
BB9 InChI InChI 1.03 InChI=1S/C3H5NO2S/c4-2(1-7)3(5)6/h1,7H,4H2,(H,5,6)/b2-1-
BB9 InChIKey InChI 1.03 SJJZZRKMMDXVIJ-UPHRSURJSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BB9 "SYSTEMATIC NAME" ACDLabs 10.04 "(2Z)-2-amino-3-sulfanylprop-2-enoic acid"
BB9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(Z)-2-amino-3-sulfanyl-prop-2-enoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BB9 'Create component' 2009-01-15 EBI
BB9 'Modify descriptor' 2011-06-04 RCSB
BB9 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BB9 N N 6.404 -1.643 1
BB9 CA C 6.404 -0.142 2
BB9 C C 7.702 0.608 3
BB9 O O 9.002 -0.142 4
BB9 CB C 5.104 0.608 5
BB9 SG S 3.805 -0.142 6
BB9 OXT O 7.702 2.107 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BB9 N CA SINGLE ENDUPRIGHT 1
BB9 CA C SINGLE ENDUPRIGHT 2
BB9 CA CB DOUBLE NONE 3
BB9 C O DOUBLE NONE 4
BB9 C OXT SINGLE NONE 5
BB9 CB SG SINGLE ENDDOWNRIGHT 6
#
_pdbe_chem_comp_substructure.comp_id BB9
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BB9 O F1 1
BB9 C F1 1
BB9 CA F1 1
BB9 N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BB9
_pdbe_chem_comp_rdkit_properties.exactmw 119.004
_pdbe_chem_comp_rdkit_properties.amw 119.145
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 12
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 53.139
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.199
_pdbe_chem_comp_rdkit_properties.CrippenMR 28.892
_pdbe_chem_comp_rdkit_properties.chi0v 3.988
_pdbe_chem_comp_rdkit_properties.chi1v 1.744
_pdbe_chem_comp_rdkit_properties.chi2v 0.483
_pdbe_chem_comp_rdkit_properties.chi3v 0.483
_pdbe_chem_comp_rdkit_properties.chi4v 0.125
_pdbe_chem_comp_rdkit_properties.chi0n 8.172
_pdbe_chem_comp_rdkit_properties.chi1n 3.547
_pdbe_chem_comp_rdkit_properties.chi2n 0.290
_pdbe_chem_comp_rdkit_properties.chi3n 0.290
_pdbe_chem_comp_rdkit_properties.chi4n 0.042
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.640
_pdbe_chem_comp_rdkit_properties.kappa1 1.702
_pdbe_chem_comp_rdkit_properties.kappa2 2.519
_pdbe_chem_comp_rdkit_properties.kappa3 2.106
_pdbe_chem_comp_rdkit_properties.Phi 0.613
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BB9 UniChem PDBe BB9
BB9 UniChem ZINC ZINC000103533686
BB9 UniChem SureChEMBL SCHEMBL13513287
BB9 UniChem PubChem 49866685
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BB9 N -0.654 1.129 -0.384 ETKDGv3 1
BB9 CA -0.078 0.026 0.334 ETKDGv3 2
BB9 C 1.354 0.091 0.711 ETKDGv3 3
BB9 O 1.900 -0.856 1.342 ETKDGv3 4
BB9 CB -0.816 -1.049 0.663 ETKDGv3 5
BB9 SG -2.555 -1.215 0.250 ETKDGv3 6
BB9 OXT 2.113 1.206 0.368 ETKDGv3 7
BB9 H -1.654 1.144 -0.680 ETKDGv3 8
BB9 H2 -0.076 1.961 -0.635 ETKDGv3 9
BB9 HB -0.371 -1.875 1.204 ETKDGv3 10
BB9 HXT 3.093 1.266 0.618 ETKDGv3 11
BB9 HG -2.258 -1.828 -0.981 ETKDGv3 12
#