data_BBI
#
_chem_comp.id BBI
_chem_comp.name (2-butyl-1-benzofuran-3-yl){4-[2-(diethylamino)ethoxy]-3,5-diiodophenyl}methanone
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H29 I2 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-17
_chem_comp.pdbx_modified_date 2015-04-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 645.312
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BBI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4O8Z
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BBI CAA CAA C 0 1 N N N N N N 34.876 -43.854 -5.989 -5.856 3.620 3.644 CAA BBI 1
BBI CAB CAB C 0 1 N N N N N N 33.926 -43.442 -4.867 -4.857 2.468 3.518 CAB BBI 2
BBI CAC CAC C 0 1 N N N N N N 32.559 -44.116 -5.053 -5.133 1.692 2.229 CAC BBI 3
BBI CAD CAD C 0 1 N N N N N N 31.449 -43.094 -4.797 -4.134 0.540 2.103 CAD BBI 4
BBI CAE CAE C 0 1 Y N N N N N 30.000 -43.592 -4.996 -4.406 -0.224 0.833 CAE BBI 5
BBI OAF OAF O 0 1 Y N N N N N 29.400 -43.809 -6.104 -5.238 -1.266 0.726 OAF BBI 6
BBI CAG CAG C 0 1 Y N N N N N 28.135 -44.188 -5.817 -5.272 -1.740 -0.537 CAG BBI 7
BBI CAH CAH C 0 1 Y N N N N N 27.125 -44.548 -6.563 -5.964 -2.783 -1.141 CAH BBI 8
BBI CAI CAI C 0 1 Y N N N N N 25.912 -44.891 -6.027 -5.792 -3.035 -2.486 CAI BBI 9
BBI CAJ CAJ C 0 1 Y N N N N N 25.730 -44.887 -4.673 -4.933 -2.257 -3.247 CAJ BBI 10
BBI CAK CAK C 0 1 Y N N N N N 26.833 -44.515 -3.944 -4.238 -1.219 -2.665 CAK BBI 11
BBI CAL CAL C 0 1 Y N N N N N 27.974 -44.183 -4.534 -4.404 -0.955 -1.309 CAL BBI 12
BBI CAM CAM C 0 1 Y N N N N N 29.115 -43.793 -4.032 -3.846 0.047 -0.379 CAM BBI 13
BBI CAN CAN C 0 1 N N N N N N 29.285 -43.685 -2.741 -2.884 1.112 -0.694 CAN BBI 14
BBI OAO OAO O 0 1 N N N N N N 28.607 -42.918 -2.058 -3.278 2.181 -1.123 OAO BBI 15
BBI CAP CAP C 0 1 Y N N N N N 30.043 -44.690 -2.220 -1.439 0.887 -0.490 CAP BBI 16
BBI CBE CBE C 0 1 Y N N N N N 31.092 -45.274 -2.896 -0.974 -0.374 -0.106 CBE BBI 17
BBI CBC CBC C 0 1 Y N N N N N 31.793 -46.307 -2.310 0.374 -0.581 0.083 CBC BBI 18
BBI IBD IBD I 0 1 N N N N N N 33.359 -47.090 -3.425 1.073 -2.471 0.658 IBD BBI 19
BBI CAQ CAQ C 0 1 Y N N N N N 29.691 -45.150 -0.998 -0.532 1.932 -0.686 CAQ BBI 20
BBI CAR CAR C 0 1 Y N N N N N 30.351 -46.152 -0.381 0.815 1.717 -0.494 CAR BBI 21
BBI IAS IAS I 0 1 N N N N N N 29.454 -46.473 1.424 2.175 3.283 -0.786 IAS BBI 22
BBI CAT CAT C 0 1 Y N N N N N 31.415 -46.751 -1.043 1.273 0.463 -0.107 CAT BBI 23
BBI OAU OAU O 0 1 N N N N N N 32.102 -47.771 -0.512 2.601 0.255 0.080 OAU BBI 24
BBI CAV CAV C 0 1 N N N N N N 32.107 -48.012 0.886 3.358 -0.171 -1.054 CAV BBI 25
BBI CAW CAW C 0 1 N N N N N N 33.437 -48.715 1.085 4.823 -0.352 -0.652 CAW BBI 26
BBI NAX NAX N 0 1 N N N N N N 33.300 -50.031 1.696 4.932 -1.446 0.322 NAX BBI 27
BBI CBA CBA C 0 1 N N N N N N 32.514 -50.040 2.957 4.577 -2.733 -0.290 CBA BBI 28
BBI CBB CBB C 0 1 N N N N N N 32.707 -48.790 3.839 4.370 -3.780 0.806 CBB BBI 29
BBI CAY CAY C 0 1 N N N N N N 34.625 -50.659 1.840 6.277 -1.496 0.909 CAY BBI 30
BBI CAZ CAZ C 0 1 N N N N N N 35.350 -50.290 3.137 6.425 -0.377 1.943 CAZ BBI 31
BBI H1 H1 H 0 1 N N N N N N 35.850 -43.365 -5.843 -5.750 4.288 2.789 H1 BBI 32
BBI H2 H2 H 0 1 N N N N N N 35.009 -44.946 -5.975 -6.870 3.221 3.670 H2 BBI 33
BBI H3 H3 H 0 1 N N N N N N 34.453 -43.549 -6.958 -5.659 4.173 4.563 H3 BBI 34
BBI H4 H4 H 0 1 N N N N N N 34.352 -43.747 -3.900 -3.843 2.867 3.492 H4 BBI 35
BBI H5 H5 H 0 1 N N N N N N 33.797 -42.350 -4.883 -4.963 1.801 4.374 H5 BBI 36
BBI H6 H6 H 0 1 N N N N N N 32.475 -44.499 -6.081 -6.147 1.293 2.255 H6 BBI 37
BBI H7 H7 H 0 1 N N N N N N 32.461 -44.950 -4.342 -5.027 2.360 1.374 H7 BBI 38
BBI H8 H8 H 0 1 N N N N N N 31.545 -42.749 -3.757 -3.120 0.939 2.077 H8 BBI 39
BBI H9 H9 H 0 1 N N N N N N 31.609 -42.247 -5.481 -4.240 -0.127 2.959 H9 BBI 40
BBI H10 H10 H 0 1 N N N N N N 27.250 -44.576 -7.635 -6.635 -3.395 -0.558 H10 BBI 41
BBI H11 H11 H 0 1 N N N N N N 25.095 -45.166 -6.678 -6.332 -3.847 -2.950 H11 BBI 42
BBI H12 H12 H 0 1 N N N N N N 24.791 -45.156 -4.211 -4.807 -2.467 -4.299 H12 BBI 43
BBI H13 H13 H 0 1 N N N N N N 26.770 -44.492 -2.866 -3.569 -0.613 -3.258 H13 BBI 44
BBI H14 H14 H 0 1 N N N N N N 31.364 -44.924 -3.881 -1.672 -1.186 0.042 H14 BBI 45
BBI H15 H15 H 0 1 N N N N N N 28.848 -44.697 -0.496 -0.887 2.907 -0.987 H15 BBI 46
BBI H16 H16 H 0 1 N N N N N N 32.065 -47.070 1.453 2.962 -1.119 -1.419 H16 BBI 47
BBI H17 H17 H 0 1 N N N N N N 31.267 -48.657 1.183 3.287 0.579 -1.841 H17 BBI 48
BBI H18 H18 H 0 1 N N N N N N 33.921 -48.833 0.104 5.415 -0.591 -1.535 H18 BBI 49
BBI H19 H19 H 0 1 N N N N N N 34.069 -48.091 1.734 5.193 0.571 -0.205 H19 BBI 50
BBI H21 H21 H 0 1 N N N N N N 31.448 -50.116 2.697 3.657 -2.621 -0.864 H21 BBI 51
BBI H22 H22 H 0 1 N N N N N N 32.812 -50.923 3.542 5.381 -3.055 -0.952 H22 BBI 52
BBI H23 H23 H 0 1 N N N N N N 32.091 -48.882 4.746 5.288 -3.888 1.383 H23 BBI 53
BBI H24 H24 H 0 1 N N N N N N 33.766 -48.701 4.123 3.562 -3.461 1.465 H24 BBI 54
BBI H25 H25 H 0 1 N N N N N N 32.402 -47.895 3.278 4.111 -4.736 0.352 H25 BBI 55
BBI H26 H26 H 0 1 N N N N N N 34.495 -51.751 1.815 6.427 -2.460 1.395 H26 BBI 56
BBI H27 H27 H 0 1 N N N N N N 35.251 -50.345 0.992 7.022 -1.365 0.124 H27 BBI 57
BBI H28 H28 H 0 1 N N N N N N 36.326 -50.796 3.169 6.200 0.581 1.475 H28 BBI 58
BBI H29 H29 H 0 1 N N N N N N 35.500 -49.201 3.176 5.733 -0.550 2.767 H29 BBI 59
BBI H30 H30 H 0 1 N N N N N N 34.744 -50.607 3.999 7.446 -0.365 2.322 H30 BBI 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BBI CAH CAI DOUB Y N 1
BBI CAH CAG SING Y N 2
BBI OAF CAG SING Y N 3
BBI OAF CAE SING Y N 4
BBI CAI CAJ SING Y N 5
BBI CAA CAB SING N N 6
BBI CAG CAL DOUB Y N 7
BBI CAC CAB SING N N 8
BBI CAC CAD SING N N 9
BBI CAE CAD SING N N 10
BBI CAE CAM DOUB Y N 11
BBI CAJ CAK DOUB Y N 12
BBI CAL CAM SING Y N 13
BBI CAL CAK SING Y N 14
BBI CAM CAN SING N N 15
BBI IBD CBC SING N N 16
BBI CBE CBC DOUB Y N 17
BBI CBE CAP SING Y N 18
BBI CAN CAP SING N N 19
BBI CAN OAO DOUB N N 20
BBI CBC CAT SING Y N 21
BBI CAP CAQ DOUB Y N 22
BBI CAT OAU SING N N 23
BBI CAT CAR DOUB Y N 24
BBI CAQ CAR SING Y N 25
BBI OAU CAV SING N N 26
BBI CAR IAS SING N N 27
BBI CAV CAW SING N N 28
BBI CAW NAX SING N N 29
BBI NAX CAY SING N N 30
BBI NAX CBA SING N N 31
BBI CAY CAZ SING N N 32
BBI CBA CBB SING N N 33
BBI CAA H1 SING N N 34
BBI CAA H2 SING N N 35
BBI CAA H3 SING N N 36
BBI CAB H4 SING N N 37
BBI CAB H5 SING N N 38
BBI CAC H6 SING N N 39
BBI CAC H7 SING N N 40
BBI CAD H8 SING N N 41
BBI CAD H9 SING N N 42
BBI CAH H10 SING N N 43
BBI CAI H11 SING N N 44
BBI CAJ H12 SING N N 45
BBI CAK H13 SING N N 46
BBI CBE H14 SING N N 47
BBI CAQ H15 SING N N 48
BBI CAV H16 SING N N 49
BBI CAV H17 SING N N 50
BBI CAW H18 SING N N 51
BBI CAW H19 SING N N 52
BBI CBA H21 SING N N 53
BBI CBA H22 SING N N 54
BBI CBB H23 SING N N 55
BBI CBB H24 SING N N 56
BBI CBB H25 SING N N 57
BBI CAY H26 SING N N 58
BBI CAY H27 SING N N 59
BBI CAZ H28 SING N N 60
BBI CAZ H29 SING N N 61
BBI CAZ H30 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BBI SMILES ACDLabs 12.01 Ic1cc(cc(I)c1OCCN(CC)CC)C(=O)c2c3ccccc3oc2CCCC
BBI InChI InChI 1.03 InChI=1S/C25H29I2NO3/c1-4-7-11-22-23(18-10-8-9-12-21(18)31-22)24(29)17-15-19(26)25(20(27)16-17)30-14-13-28(5-2)6-3/h8-10,12,15-16H,4-7,11,13-14H2,1-3H3
BBI InChIKey InChI 1.03 IYIKLHRQXLHMJQ-UHFFFAOYSA-N
BBI SMILES_CANONICAL CACTVS 3.385 CCCCc1oc2ccccc2c1C(=O)c3cc(I)c(OCCN(CC)CC)c(I)c3
BBI SMILES CACTVS 3.385 CCCCc1oc2ccccc2c1C(=O)c3cc(I)c(OCCN(CC)CC)c(I)c3
BBI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCCc1c(c2ccccc2o1)C(=O)c3cc(c(c(c3)I)OCCN(CC)CC)I
BBI SMILES "OpenEye OEToolkits" 1.7.6 CCCCc1c(c2ccccc2o1)C(=O)c3cc(c(c(c3)I)OCCN(CC)CC)I
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BBI "SYSTEMATIC NAME" ACDLabs 12.01 (2-butyl-1-benzofuran-3-yl){4-[2-(diethylamino)ethoxy]-3,5-diiodophenyl}methanone
BBI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2-butyl-1-benzofuran-3-yl)-[4-[2-(diethylamino)ethoxy]-3,5-bis(iodanyl)phenyl]methanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BBI 'Create component' 2014-01-17 PDBJ
BBI 'Initial release' 2015-04-22 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id BBI
_pdbe_chem_comp_drugbank_details.drugbank_id DB01118
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Amiodarone
_pdbe_chem_comp_drugbank_details.description
'Amiodarone is a benzofuran derivative, anti-arrhythmic drug used commonly in a variety of settings.[A36817] Most known for its approved indication in life-threatening ventricular arrhythmias, it is also used off-label in the outpatient and inpatient setting for atrial fibrillation. Because of its ability to cause serious toxicity and possibly death, amiodarone use should be reserved for its approved indications, according to prescribing information.[L3561,L11265,L11286]'
_pdbe_chem_comp_drugbank_details.cas_number 1951-25-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Amiodarone is considered a class III anti-arrhythmic drug. It blocks potassium currents that cause repolarization of the heart muscle during the third phase of the cardiac action potential. As a result amiodarone increases the duration of the action potential as well as the effective refractory period for cardiac cells (myocytes). Therefore, cardiac muscle cell excitability is reduced, preventing and treating abnormal heart rhythms.[A183137,A189747]  Unique from other members of the class III anti-arrhythmic drug class, amiodarone also interferes with the functioning of beta-adrenergic receptors, sodium channels, and calcium channels channels. These actions, at times, can lead to undesirable effects, such as hypotension, bradycardia, and Torsades de pointes (TdP).[L11265] In addition to the above, amiodarone may increase activity of peroxisome proliferator-activated receptors, leading to steatogenic changes in the liver or other organs.[A20227,A20650] Finally, amiodarone has been found to bind to the thyroid receptor due to its iodine content, potentially leading to amiodarone induced hypothyroidism or thyrotoxicosis.[A182168]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
BBI 2-Butyl-3-(3,5-diiodo-4-(2-diethylaminoethoxy)benzoyl)benzofuran DrugBank ?
BBI '2-Butyl-3-benzofuranyl 4-(2-(diethylamino)ethoxy)-3,5-diiodophenyl ketone' DrugBank ?
BBI "2-n-Butyl-3',5'-diiodo-4'-N-diethylaminoethoxy-3-benzoylbenzofuran" DrugBank ?
BBI Amiodarone DrugBank ?
BBI Amiodaronum DrugBank ?
BBI 'Amio-Aqueous IV' DrugBank 'International brand'
BBI Aratac DrugBank 'International brand'
BBI Arycor DrugBank 'International brand'
BBI Atlansil DrugBank 'International brand'
BBI Tachyra DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id BBI
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01118
_pdbe_chem_comp_drugbank_classification.parent Aryl-phenylketones
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as aryl-phenylketones. These are aromatic compounds containing a ketone substituted by one aryl group, and a phenyl group.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
BBI DB01118 'Potassium voltage-gated channel subfamily H member 2' Humans Q12809 yes 1
BBI DB01118 'Potassium voltage-gated channel subfamily H member 6' Humans Q9H252 yes 2
BBI DB01118 'Potassium voltage-gated channel subfamily H member 7' Humans Q9NS40 yes 3
BBI DB01118 'Beta-1 adrenergic receptor' Humans P08588 yes 4
BBI DB01118 'Beta-2 adrenergic receptor' Humans P07550 yes 5
BBI DB01118 'Beta-3 adrenergic receptor' Humans P13945 yes 6
BBI DB01118 'Voltage-dependent T-type calcium channel subunit alpha-1I' Humans Q9P0X4 unknown 7
BBI DB01118 'Voltage-dependent L-type calcium channel subunit alpha-1C' Humans Q13936 unknown 8
BBI DB01118 'Voltage-dependent L-type calcium channel subunit alpha-1D' Humans Q01668 unknown 9
BBI DB01118 'Voltage-dependent L-type calcium channel subunit alpha-1F' Humans O60840 unknown 10
BBI DB01118 'Voltage-dependent L-type calcium channel subunit alpha-1S' Humans Q13698 unknown 11
BBI DB01118 'Voltage-dependent L-type calcium channel subunit beta-1' Humans Q02641 unknown 12
BBI DB01118 'Voltage-dependent L-type calcium channel subunit beta-2' Humans Q08289 unknown 13
BBI DB01118 'Voltage-dependent L-type calcium channel subunit beta-3' Humans P54284 unknown 14
BBI DB01118 'Voltage-dependent L-type calcium channel subunit beta-4' Humans O00305 unknown 15
BBI DB01118 'Thyroid hormone receptor alpha' Humans P10827 unknown 16
BBI DB01118 'Thyroid hormone receptor beta' Humans P10828 unknown 17
BBI DB01118 'Peroxisome proliferator-activated receptor gamma' Humans P37231 unknown 18
BBI DB01118 'Peroxisome proliferator-activated receptor alpha' Humans Q07869 unknown 19
BBI DB01118 'Peroxisome proliferator-activated receptor gamma coactivator 1-beta' Humans Q86YN6 unknown 20
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BBI CAA C 10.143 -6.735 1
BBI CAB C 9.393 -5.436 2
BBI CAC C 10.143 -4.137 3
BBI CAD C 9.393 -2.838 4
BBI CAE C 7.893 -2.838 5
BBI OAF O 7.018 -4.045 6
BBI CAG C 5.598 -3.588 7
BBI CAH C 4.299 -4.338 8
BBI CAI C 3.000 -3.588 9
BBI CAJ C 3.000 -2.088 10
BBI CAK C 4.299 -1.338 11
BBI CAL C 5.598 -2.088 12
BBI CAM C 7.018 -1.631 13
BBI CAN C 7.483 -0.205 14
BBI OAO O 6.482 0.911 15
BBI CAP C 8.951 0.104 16
BBI CBE C 9.953 -1.012 17
BBI CBC C 11.421 -0.703 18
BBI IBD I 12.422 -1.819 19
BBI CAQ C 9.417 1.530 20
BBI CAR C 10.885 1.839 21
BBI IAS I 11.351 3.265 22
BBI CAT C 11.887 0.723 23
BBI OAU O 13.354 1.032 24
BBI CAV C 13.820 2.458 25
BBI CAW C 15.288 2.767 26
BBI NAX N 15.754 4.193 27
BBI CBA C 14.752 5.309 28
BBI CBB C 15.218 6.735 29
BBI CAY C 17.222 4.502 30
BBI CAZ C 17.688 5.928 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BBI CAH CAI SINGLE NONE 1
BBI CAH CAG DOUBLE NONE 2
BBI OAF CAG SINGLE NONE 3
BBI OAF CAE SINGLE NONE 4
BBI CAI CAJ DOUBLE NONE 5
BBI CAA CAB SINGLE NONE 6
BBI CAG CAL SINGLE NONE 7
BBI CAC CAB SINGLE NONE 8
BBI CAC CAD SINGLE NONE 9
BBI CAE CAD SINGLE NONE 10
BBI CAE CAM DOUBLE NONE 11
BBI CAJ CAK SINGLE NONE 12
BBI CAL CAM SINGLE NONE 13
BBI CAL CAK DOUBLE NONE 14
BBI CAM CAN SINGLE NONE 15
BBI IBD CBC SINGLE NONE 16
BBI CBE CBC DOUBLE NONE 17
BBI CBE CAP SINGLE NONE 18
BBI CAN CAP SINGLE NONE 19
BBI CAN OAO DOUBLE NONE 20
BBI CBC CAT SINGLE NONE 21
BBI CAP CAQ DOUBLE NONE 22
BBI CAT OAU SINGLE NONE 23
BBI CAT CAR DOUBLE NONE 24
BBI CAQ CAR SINGLE NONE 25
BBI OAU CAV SINGLE NONE 26
BBI CAR IAS SINGLE NONE 27
BBI CAV CAW SINGLE NONE 28
BBI CAW NAX SINGLE NONE 29
BBI NAX CAY SINGLE NONE 30
BBI NAX CBA SINGLE NONE 31
BBI CAY CAZ SINGLE NONE 32
BBI CBA CBB SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BBI MurckoScaffold S1 scaffold O=C(c1ccccc1)c1coc2ccccc12 InChI=1S/C15H10O2/c16-15(11-6-2-1-3-7-11)13-10-17-14-9-5-4-8-12(13)14/h1-10H TWWAVGXQPVEBKZ-UHFFFAOYSA-N
BBI furan F1 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
BBI phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BBI CAE S1 1
BBI OAF S1 1
BBI CAG S1 1
BBI CAH S1 1
BBI CAI S1 1
BBI CAJ S1 1
BBI CAK S1 1
BBI CAL S1 1
BBI CAM S1 1
BBI CAN S1 1
BBI OAO S1 1
BBI CAP S1 1
BBI CBE S1 1
BBI CBC S1 1
BBI CAQ S1 1
BBI CAR S1 1
BBI CAT S1 1
BBI CAE F1 1
BBI CAM F1 1
BBI CAL F1 1
BBI CAG F1 1
BBI OAF F1 1
BBI CAG F2 1
BBI CAH F2 1
BBI CAI F2 1
BBI CAJ F2 1
BBI CAK F2 1
BBI CAL F2 1
BBI CAP F2 2
BBI CBE F2 2
BBI CBC F2 2
BBI CAT F2 2
BBI CAR F2 2
BBI CAQ F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id BBI
_pdbe_chem_comp_rdkit_properties.exactmw 645.024
_pdbe_chem_comp_rdkit_properties.amw 645.319
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.282
_pdbe_chem_comp_rdkit_properties.tpsa 42.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.881
_pdbe_chem_comp_rdkit_properties.CrippenMR 139.803
_pdbe_chem_comp_rdkit_properties.chi0v 19.243
_pdbe_chem_comp_rdkit_properties.chi1v 9.977
_pdbe_chem_comp_rdkit_properties.chi2v 4.948
_pdbe_chem_comp_rdkit_properties.chi3v 4.948
_pdbe_chem_comp_rdkit_properties.chi4v 4.020
_pdbe_chem_comp_rdkit_properties.chi0n 43.928
_pdbe_chem_comp_rdkit_properties.chi1n 22.319
_pdbe_chem_comp_rdkit_properties.chi2n 3.429
_pdbe_chem_comp_rdkit_properties.chi3n 3.429
_pdbe_chem_comp_rdkit_properties.chi4n 2.205
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.130
_pdbe_chem_comp_rdkit_properties.kappa1 6.719
_pdbe_chem_comp_rdkit_properties.kappa2 11.652
_pdbe_chem_comp_rdkit_properties.kappa3 5.815
_pdbe_chem_comp_rdkit_properties.Phi 2.525
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BBI UniChem ChEMBL CHEMBL633
BBI UniChem DrugBank DB01118
BBI UniChem PDBe BBI
BBI UniChem 'Guide to Pharmacology' 2566
BBI UniChem 'KEGG LIGAND' C06823
BBI UniChem ChEBI 2663
BBI UniChem ZINC ZINC000003830212
BBI UniChem eMolecules 901372
BBI UniChem atlas amiodarone
BBI UniChem fdasrs N3RQ532IUT
BBI UniChem SureChEMBL SCHEMBL16284
BBI UniChem PharmGKB PA448383
BBI UniChem HMDB HMDB0015250
BBI UniChem 'PubChem TPHARMA' 14765719
BBI UniChem LINCS LSM-2379
BBI UniChem BindingDb 18957
BBI UniChem 'EPA CompTox Dashboard' DTXSID7022592
BBI UniChem DrugCentral 176
BBI UniChem BRENDA 229155
BBI UniChem BRENDA 229156
BBI UniChem BRENDA 5758
BBI UniChem ChemicalBook CB5310616
BBI UniChem DailyMed AMIODARONE
BBI UniChem ClinicalTrials AMIODARONE
BBI UniChem ClinicalTrials 'AMIODARONE HYDROCHLORIDE'
BBI UniChem ClinicalTrials CORDARONE
BBI UniChem ClinicalTrials L-3428
BBI UniChem ClinicalTrials NEXTERONE
BBI UniChem ClinicalTrials PACERONE
BBI UniChem ClinicalTrials 'SKF 33134-A'
BBI UniChem ClinicalTrials SKF-33134-A
BBI UniChem rxnorm AMIODARONE
BBI UniChem rxnorm 'AMIODARONE HYDROCHLORIDE'
BBI UniChem rxnorm CORDARONE
BBI UniChem rxnorm NEXTERONE
BBI UniChem rxnorm PACERONE
BBI UniChem MedChemExpress HY-14187
BBI UniChem 'Probes And Drugs' PD009796
BBI UniChem Nikkaji J7.829H
BBI UniChem PubChem 2157
BBI UniChem Mcule MCULE-4156227717
BBI UniChem ACTor 1951-25-3
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BBI CAA -7.784 0.286 -2.137 ETKDGv3 1
BBI CAB -6.432 0.545 -1.479 ETKDGv3 2
BBI CAC -6.586 1.412 -0.222 ETKDGv3 3
BBI CAD -5.239 1.700 0.454 ETKDGv3 4
BBI CAE -4.658 0.460 1.078 ETKDGv3 5
BBI OAF -5.260 -0.158 2.183 ETKDGv3 6
BBI CAG -4.474 -1.249 2.503 ETKDGv3 7
BBI CAH -4.659 -2.147 3.471 ETKDGv3 8
BBI CAI -3.668 -3.253 3.579 ETKDGv3 9
BBI CAJ -2.633 -3.331 2.712 ETKDGv3 10
BBI CAK -2.469 -2.309 1.642 ETKDGv3 11
BBI CAL -3.364 -1.318 1.592 ETKDGv3 12
BBI CAM -3.535 -0.180 0.690 ETKDGv3 13
BBI CAN -2.645 0.177 -0.437 ETKDGv3 14
BBI OAO -3.157 0.470 -1.550 ETKDGv3 15
BBI CAP -1.169 0.172 -0.300 ETKDGv3 16
BBI CBE -0.321 -0.014 -1.505 ETKDGv3 17
BBI CBC 1.014 -0.011 -1.406 ETKDGv3 18
BBI IBD 2.178 -0.352 -3.138 ETKDGv3 19
BBI CAQ -0.574 0.355 0.894 ETKDGv3 20
BBI CAR 0.899 0.350 1.010 ETKDGv3 21
BBI IAS 1.762 0.596 2.925 ETKDGv3 22
BBI CAT 1.660 0.191 -0.086 ETKDGv3 23
BBI OAU 3.050 0.199 0.018 ETKDGv3 24
BBI CAV 3.804 1.387 -0.198 ETKDGv3 25
BBI CAW 5.291 1.100 0.010 ETKDGv3 26
BBI NAX 5.748 0.007 -0.875 ETKDGv3 27
BBI CBA 6.010 0.394 -2.281 ETKDGv3 28
BBI CBB 7.345 1.109 -2.501 ETKDGv3 29
BBI CAY 6.731 -0.934 -0.286 ETKDGv3 30
BBI CAZ 7.863 -0.262 0.511 ETKDGv3 31
BBI H1 -7.643 -0.341 -3.042 ETKDGv3 32
BBI H2 -8.257 1.245 -2.439 ETKDGv3 33
BBI H3 -8.458 -0.251 -1.435 ETKDGv3 34
BBI H4 -5.973 -0.432 -1.214 ETKDGv3 35
BBI H5 -5.772 1.061 -2.210 ETKDGv3 36
BBI H6 -7.268 0.913 0.501 ETKDGv3 37
BBI H7 -7.047 2.383 -0.508 ETKDGv3 38
BBI H8 -4.539 2.170 -0.267 ETKDGv3 39
BBI H9 -5.406 2.440 1.266 ETKDGv3 40
BBI H10 -5.502 -2.080 4.145 ETKDGv3 41
BBI H11 -3.782 -4.000 4.353 ETKDGv3 42
BBI H12 -1.920 -4.140 2.792 ETKDGv3 43
BBI H13 -1.656 -2.375 0.932 ETKDGv3 44
BBI H14 -0.784 -0.174 -2.470 ETKDGv3 45
BBI H15 -1.162 0.520 1.788 ETKDGv3 46
BBI H16 3.616 1.779 -1.218 ETKDGv3 47
BBI H17 3.484 2.166 0.528 ETKDGv3 48
BBI H18 5.880 2.026 -0.157 ETKDGv3 49
BBI H19 5.405 0.815 1.078 ETKDGv3 50
BBI H21 5.987 -0.518 -2.917 ETKDGv3 51
BBI H22 5.197 1.048 -2.658 ETKDGv3 52
BBI H23 8.194 0.414 -2.334 ETKDGv3 53
BBI H24 7.401 1.459 -3.553 ETKDGv3 54
BBI H25 7.442 1.995 -1.841 ETKDGv3 55
BBI H26 7.179 -1.569 -1.081 ETKDGv3 56
BBI H27 6.191 -1.627 0.394 ETKDGv3 57
BBI H28 8.277 0.619 -0.014 ETKDGv3 58
BBI H29 8.683 -0.993 0.667 ETKDGv3 59
BBI H30 7.505 0.056 1.512 ETKDGv3 60
#