data_BD3
#
_chem_comp.id BD3
_chem_comp.name
Nalpha-[(3-tert-butyl-1-methyl-1H-pyrazol-5-yl)carbonyl]-N-[(2E)-2-iminoethyl]-3-{5-[(Z)-iminomethyl]-1,3,4-oxadiazol-2-yl}-L-phenylalaninamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H28 N8 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-06-19
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 464.520
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BD3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3HWN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BD3 C1 C1 C 0 1 Y N N N N N 31.345 -25.752 -13.764 -1.249 -2.445 -0.202 C1 BD3 1
BD3 C2 C2 C 0 1 Y N N N N N 31.181 -25.808 -15.149 -1.463 -3.281 -1.283 C2 BD3 2
BD3 C3 C3 C 0 1 Y N N N N N 30.337 -25.205 -12.966 0.033 -2.205 0.245 C3 BD3 3
BD3 C4 C4 C 0 1 Y N N N N N 30.029 -25.314 -15.747 -0.394 -3.887 -1.920 C4 BD3 4
BD3 C5 C5 C 0 1 Y N N N N N 29.181 -24.706 -13.568 1.117 -2.813 -0.392 C5 BD3 5
BD3 C6 C6 C 0 1 Y N N N N N 29.030 -24.761 -14.963 0.893 -3.661 -1.479 C6 BD3 6
BD3 C7 C7 C 0 1 Y N N N N N 28.068 -24.143 -12.797 2.493 -2.561 0.081 C7 BD3 7
BD3 C12 C12 C 0 1 N N N N N N 24.805 -23.211 -13.044 6.070 -2.865 0.098 C12 BD3 8
BD3 N13 N13 N 0 1 N N N N N N 24.237 -21.904 -12.679 6.950 -2.324 0.881 N13 BD3 9
BD3 C15 C15 C 0 1 N N S N N N 32.853 -27.791 -13.498 -2.713 -0.443 -0.182 C15 BD3 10
BD3 C17 C17 C 0 1 N N N N N N 31.035 -29.341 -14.177 -1.358 1.474 -0.831 C17 BD3 11
BD3 C18 C18 C 0 1 Y N N N N N 29.900 -30.210 -13.766 -0.160 2.317 -0.682 C18 BD3 12
BD3 N22 N22 N 0 1 N N N N N N 35.279 -28.069 -13.085 -5.128 -0.507 0.348 N22 BD3 13
BD3 C23 C23 C 0 1 N N N N N N 36.509 -28.536 -12.441 -6.338 0.075 0.935 C23 BD3 14
BD3 C24 C24 C 0 1 N N N N N N 37.302 -27.327 -11.913 -7.501 -0.857 0.716 C24 BD3 15
BD3 C30 C30 C 0 1 N N N N N N 28.637 -30.285 -15.937 -0.413 3.691 -2.771 C30 BD3 16
BD3 C31 C31 C 0 1 N N N N N N 27.858 -32.276 -11.476 2.924 3.603 0.859 C31 BD3 17
BD3 C32 C32 C 0 1 N N N N N N 28.475 -32.110 -10.077 2.539 3.687 2.337 C32 BD3 18
BD3 C33 C33 C 0 1 N N N N N N 27.906 -33.750 -11.876 3.480 4.952 0.399 C33 BD3 19
BD3 C34 C34 C 0 1 N N N N N N 26.381 -31.879 -11.405 3.991 2.522 0.671 C34 BD3 20
BD3 N25 N25 N 0 1 N N N N N N 38.599 -27.486 -11.765 -8.195 -1.259 1.713 N25 BD3 21
BD3 C20 C20 C 0 1 N N N N N N 33.992 -28.377 -12.700 -3.957 0.155 0.423 C20 BD3 22
BD3 O21 O21 O 0 1 N N N N N N 33.764 -29.109 -11.757 -3.904 1.233 0.976 O21 BD3 23
BD3 N16 N16 N 0 1 N N N N N N 31.714 -28.663 -13.211 -1.582 0.463 0.031 N16 BD3 24
BD3 O19 O19 O 0 1 N N N N N N 31.379 -29.202 -15.332 -2.145 1.691 -1.732 O19 BD3 25
BD3 C29 C29 C 0 1 Y N N N N N 29.708 -30.740 -12.510 0.765 2.270 0.347 C29 BD3 26
BD3 C28 C28 C 0 1 Y N N N N N 28.535 -31.452 -12.572 1.707 3.255 0.041 C28 BD3 27
BD3 N27 N27 N 0 1 Y N N N N N 28.065 -31.344 -13.841 1.346 3.822 -1.081 N27 BD3 28
BD3 N26 N26 N 0 1 Y N N N N N 28.849 -30.618 -14.519 0.264 3.297 -1.533 N26 BD3 29
BD3 C14 C14 C 0 1 N N N N N N 32.607 -26.313 -13.118 -2.420 -1.789 0.484 C14 BD3 30
BD3 O11 O11 O 0 1 Y N N N N N 27.024 -23.953 -13.357 3.622 -3.075 -0.442 O11 BD3 31
BD3 C10 C10 C 0 1 Y N N N N N 26.224 -23.514 -12.568 4.641 -2.583 0.294 C10 BD3 32
BD3 N9 N9 N 0 1 Y N N N N N 26.795 -23.389 -11.345 4.121 -1.805 1.219 N9 BD3 33
BD3 N8 N8 N 0 1 Y N N N N N 27.984 -23.811 -11.492 2.841 -1.787 1.089 N8 BD3 34
BD3 H2 H2 H 0 1 N N N N N N 31.958 -26.240 -15.762 -2.469 -3.463 -1.632 H2 BD3 35
BD3 H3 H3 H 0 1 N N N N N N 30.451 -25.169 -11.893 0.199 -1.548 1.087 H3 BD3 36
BD3 H4 H4 H 0 1 N N N N N N 29.912 -25.361 -16.820 -0.568 -4.539 -2.763 H4 BD3 37
BD3 H6 H6 H 0 1 N N N N N N 28.135 -24.372 -15.425 1.727 -4.135 -1.976 H6 BD3 38
BD3 H12 H12 H 0 1 N N N N N N 24.242 -23.927 -13.625 6.387 -3.522 -0.698 H12 BD3 39
BD3 HN13 HN13 H 0 0 N N N N N N 24.943 -21.432 -12.151 6.666 -1.733 1.596 HN13 BD3 40
BD3 H15 H15 H 0 1 N N N N N N 33.057 -27.760 -14.579 -2.864 -0.592 -1.251 H15 BD3 41
BD3 HN22 HN22 H 0 0 N N N N N N 35.383 -27.470 -13.879 -5.171 -1.369 -0.095 HN22 BD3 42
BD3 H23 H23 H 0 1 N N N N N N 36.254 -29.202 -11.603 -6.187 0.224 2.004 H23 BD3 43
BD3 H23A H23A H 0 0 N N N N N N 37.120 -29.085 -13.172 -6.547 1.034 0.461 H23A BD3 44
BD3 H24 H24 H 0 1 N N N N N N 36.816 -26.392 -11.675 -7.750 -1.186 -0.282 H24 BD3 45
BD3 H30 H30 H 0 1 N N N N N N 28.584 -29.192 -16.054 -1.082 4.528 -2.568 H30 BD3 46
BD3 H30A H30A H 0 0 N N N N N N 29.473 -30.677 -16.535 0.329 3.991 -3.511 H30A BD3 47
BD3 H30B H30B H 0 0 N N N N N N 27.695 -30.736 -16.283 -0.990 2.849 -3.154 H30B BD3 48
BD3 H32 H32 H 0 1 N N N N N N 29.571 -32.070 -10.161 3.419 3.938 2.929 H32 BD3 49
BD3 H32A H32A H 0 0 N N N N N N 28.108 -31.177 -9.623 1.779 4.457 2.471 H32A BD3 50
BD3 H32B H32B H 0 0 N N N N N N 28.187 -32.964 -9.446 2.143 2.726 2.665 H32B BD3 51
BD3 H33 H33 H 0 1 N N N N N N 27.918 -33.833 -12.973 3.755 4.892 -0.654 H33 BD3 52
BD3 H33A H33A H 0 0 N N N N N N 28.815 -34.212 -11.464 2.720 5.722 0.533 H33A BD3 53
BD3 H33B H33B H 0 0 N N N N N N 27.020 -34.266 -11.479 4.360 5.203 0.991 H33B BD3 54
BD3 H34 H34 H 0 1 N N N N N N 26.077 -31.784 -10.352 3.595 1.560 0.999 H34 BD3 55
BD3 H34A H34A H 0 0 N N N N N N 26.235 -30.916 -11.917 4.266 2.461 -0.382 H34A BD3 56
BD3 H34B H34B H 0 0 N N N N N N 25.770 -32.652 -11.895 4.871 2.773 1.263 H34B BD3 57
BD3 HN25 HN25 H 0 0 N N N N N N 38.974 -26.626 -11.419 -8.944 -1.859 1.572 HN25 BD3 58
BD3 HN16 HN16 H 0 0 N N N N N N 31.420 -28.766 -12.261 -0.994 0.335 0.792 HN16 BD3 59
BD3 H29 H29 H 0 1 N N N N N N 30.350 -30.620 -11.650 0.759 1.613 1.204 H29 BD3 60
BD3 H14 H14 H 0 1 N N N N N N 33.468 -25.717 -13.456 -3.296 -2.433 0.403 H14 BD3 61
BD3 H14A H14A H 0 0 N N N N N N 32.480 -26.261 -12.027 -2.182 -1.631 1.536 H14A BD3 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BD3 C2 C1 DOUB Y N 1
BD3 C1 C14 SING N N 2
BD3 C1 C3 SING Y N 3
BD3 C4 C2 SING Y N 4
BD3 C2 H2 SING N N 5
BD3 C5 C3 DOUB Y N 6
BD3 C3 H3 SING N N 7
BD3 C4 C6 DOUB Y N 8
BD3 C4 H4 SING N N 9
BD3 C6 C5 SING Y N 10
BD3 C5 C7 SING Y N 11
BD3 C6 H6 SING N N 12
BD3 O11 C7 SING Y N 13
BD3 C7 N8 DOUB Y N 14
BD3 C12 N13 DOUB N N 15
BD3 C12 C10 SING N N 16
BD3 C12 H12 SING N N 17
BD3 N13 HN13 SING N N 18
BD3 C15 N16 SING N N 19
BD3 C15 C14 SING N N 20
BD3 C15 C20 SING N N 21
BD3 C15 H15 SING N N 22
BD3 O19 C17 DOUB N N 23
BD3 C17 C18 SING N N 24
BD3 C17 N16 SING N N 25
BD3 N26 C18 SING Y N 26
BD3 C18 C29 DOUB Y N 27
BD3 N22 C20 SING N N 28
BD3 N22 C23 SING N N 29
BD3 N22 HN22 SING N N 30
BD3 C23 C24 SING N N 31
BD3 C23 H23 SING N N 32
BD3 C23 H23A SING N N 33
BD3 C24 N25 DOUB N N 34
BD3 C24 H24 SING N N 35
BD3 C30 N26 SING N N 36
BD3 C30 H30 SING N N 37
BD3 C30 H30A SING N N 38
BD3 C30 H30B SING N N 39
BD3 C28 C31 SING N N 40
BD3 C33 C31 SING N N 41
BD3 C31 C34 SING N N 42
BD3 C31 C32 SING N N 43
BD3 C32 H32 SING N N 44
BD3 C32 H32A SING N N 45
BD3 C32 H32B SING N N 46
BD3 C33 H33 SING N N 47
BD3 C33 H33A SING N N 48
BD3 C33 H33B SING N N 49
BD3 C34 H34 SING N N 50
BD3 C34 H34A SING N N 51
BD3 C34 H34B SING N N 52
BD3 N25 HN25 SING N N 53
BD3 C20 O21 DOUB N N 54
BD3 N16 HN16 SING N N 55
BD3 C28 C29 SING Y N 56
BD3 C29 H29 SING N N 57
BD3 N27 C28 DOUB Y N 58
BD3 N26 N27 SING Y N 59
BD3 C14 H14 SING N N 60
BD3 C14 H14A SING N N 61
BD3 O11 C10 SING Y N 62
BD3 C10 N9 DOUB Y N 63
BD3 N8 N9 SING Y N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BD3 SMILES ACDLabs 10.04 O=C(NCC=[N@H])C(NC(=O)c1cc(nn1C)C(C)(C)C)Cc3cc(c2nnc(o2)C=[N@H])ccc3
BD3 SMILES_CANONICAL CACTVS 3.341 Cn1nc(cc1C(=O)N[C@@H](Cc2cccc(c2)c3oc(C=N)nn3)C(=O)NCC=N)C(C)(C)C
BD3 SMILES CACTVS 3.341 Cn1nc(cc1C(=O)N[CH](Cc2cccc(c2)c3oc(C=N)nn3)C(=O)NCC=N)C(C)(C)C
BD3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C/CNC(=O)[C@H](Cc1cccc(c1)c2nnc(o2)\C=N/[H])NC(=O)c3cc(nn3C)C(C)(C)C"
BD3 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=CCNC(=O)C(Cc1cccc(c1)c2nnc(o2)C=N[H])NC(=O)c3cc(nn3C)C(C)(C)C"
BD3 InChI InChI 1.03 InChI=1S/C23H28N8O3/c1-23(2,3)18-12-17(31(4)30-18)21(33)27-16(20(32)26-9-8-24)11-14-6-5-7-15(10-14)22-29-28-19(13-25)34-22/h5-8,10,12-13,16,24-25H,9,11H2,1-4H3,(H,26,32)(H,27,33)/b24-8+,25-13-/t16-/m0/s1
BD3 InChIKey InChI 1.03 TVWDSIGUOHNHHP-TTWIPJPDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BD3 "SYSTEMATIC NAME" ACDLabs 10.04 Nalpha-[(3-tert-butyl-1-methyl-1H-pyrazol-5-yl)carbonyl]-N-[(2E)-2-iminoethyl]-3-{5-[(Z)-iminomethyl]-1,3,4-oxadiazol-2-yl}-L-phenylalaninamide
BD3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 5-tert-butyl-N-[(2S)-1-(2-iminoethylamino)-3-[3-[5-(iminomethyl)-1,3,4-oxadiazol-2-yl]phenyl]-1-oxo-propan-2-yl]-2-methyl-pyrazole-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BD3 'Create component' 2009-06-19 RCSB
BD3 'Modify aromatic_flag' 2011-06-04 RCSB
BD3 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BD3 C1 C 1.096 -1.376 1
BD3 C2 C 2.401 -0.629 2
BD3 C3 C 1.094 -2.875 3
BD3 C4 C 3.695 -1.386 4
BD3 C5 C 2.388 -3.632 5
BD3 C6 C 3.692 -2.885 6
BD3 C7 C 2.383 -5.130 7
BD3 C12 C 4.001 -8.658 8
BD3 N13 N 3.387 -10.026 9
BD3 C15 C -0.194 0.878 10
BD3 C17 C -1.485 3.131 11
BD3 C18 C -2.782 3.887 12
BD3 N22 N 2.405 0.869 13
BD3 C23 C 3.707 1.615 14
BD3 C24 C 5.003 0.860 15
BD3 C30 C -1.807 6.376 16
BD3 C31 C -6.644 4.257 17
BD3 C32 C -7.522 5.473 18
BD3 C33 C -6.492 2.764 19
BD3 C34 C -7.860 3.378 20
BD3 N25 N 6.305 1.606 21
BD3 C20 C 1.108 1.624 22
BD3 O21 O 1.113 3.124 23
BD3 N16 N -1.491 1.632 24
BD3 O19 O -0.183 3.876 25
BD3 C29 C -4.154 3.287 26
BD3 C28 C -5.153 4.407 27
BD3 N27 N -4.392 5.700 28
BD3 N26 N -2.927 5.381 29
BD3 C14 C -0.199 -0.622 30
BD3 O11 O 3.593 -6.017 31
BD3 C10 C 3.126 -7.441 32
BD3 N9 N 1.624 -7.436 33
BD3 N8 N 1.168 -6.008 34
BD3 HN13 H 1.894 -10.178 35
BD3 HN25 H 7.601 0.851 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BD3 C2 C1 DOUBLE NONE 1
BD3 C1 C14 SINGLE NONE 2
BD3 C1 C3 SINGLE NONE 3
BD3 C4 C2 SINGLE NONE 4
BD3 C5 C3 DOUBLE NONE 5
BD3 C4 C6 DOUBLE NONE 6
BD3 C6 C5 SINGLE NONE 7
BD3 C5 C7 SINGLE NONE 8
BD3 O11 C7 SINGLE NONE 9
BD3 C7 N8 DOUBLE NONE 10
BD3 C12 N13 DOUBLE NONE 11
BD3 C12 C10 SINGLE ENDDOWNRIGHT 12
BD3 C15 N16 SINGLE NONE 13
BD3 C15 C14 SINGLE BEGINDASH 14
BD3 C15 C20 SINGLE NONE 15
BD3 O19 C17 DOUBLE NONE 16
BD3 C17 C18 SINGLE NONE 17
BD3 C17 N16 SINGLE NONE 18
BD3 N26 C18 SINGLE NONE 19
BD3 C18 C29 DOUBLE NONE 20
BD3 N22 C20 SINGLE NONE 21
BD3 N22 C23 SINGLE NONE 22
BD3 C23 C24 SINGLE ENDUPRIGHT 23
BD3 C24 N25 DOUBLE NONE 24
BD3 C30 N26 SINGLE NONE 25
BD3 C28 C31 SINGLE NONE 26
BD3 C33 C31 SINGLE NONE 27
BD3 C31 C34 SINGLE NONE 28
BD3 C31 C32 SINGLE NONE 29
BD3 C20 O21 DOUBLE NONE 30
BD3 C28 C29 SINGLE NONE 31
BD3 N27 C28 DOUBLE NONE 32
BD3 N26 N27 SINGLE NONE 33
BD3 O11 C10 SINGLE NONE 34
BD3 C10 N9 DOUBLE NONE 35
BD3 N8 N9 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BD3 MurckoScaffold S1 scaffold 'O=C(NCCc1cccc(-c2nnco2)c1)c1ccn[nH]1' InChI=1S/C14H13N5O2/c20-13(12-5-7-16-18-12)15-6-4-10-2-1-3-11(8-10)14-19-17-9-21-14/h1-3,5,7-9H,4,6H2,(H,15,20)(H,16,18) NLPNQCLLORXFCW-UHFFFAOYSA-N
BD3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
BD3 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
BD3 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
BD3 pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
BD3 Z381729066 F5 fragment 'CC(C)NC(=O)c1cc[nH]n1' InChI=1S/C7H11N3O/c1-5(2)9-7(11)6-3-4-8-10-6/h3-5H,1-2H3,(H,8,10)(H,9,11) KIDXTSGRYSIIRY-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BD3 C1 S1 1
BD3 C2 S1 1
BD3 C3 S1 1
BD3 C4 S1 1
BD3 C5 S1 1
BD3 C6 S1 1
BD3 C7 S1 1
BD3 C15 S1 1
BD3 C17 S1 1
BD3 C18 S1 1
BD3 N16 S1 1
BD3 O19 S1 1
BD3 C29 S1 1
BD3 C28 S1 1
BD3 N27 S1 1
BD3 N26 S1 1
BD3 C14 S1 1
BD3 O11 S1 1
BD3 C10 S1 1
BD3 N9 S1 1
BD3 N8 S1 1
BD3 N22 F1 1
BD3 C20 F1 1
BD3 O21 F1 1
BD3 C15 F1 1
BD3 N16 F1 2
BD3 C17 F1 2
BD3 O19 F1 2
BD3 C18 F1 2
BD3 O21 F2 1
BD3 C20 F2 1
BD3 C15 F2 1
BD3 N16 F2 1
BD3 C1 F3 1
BD3 C2 F3 1
BD3 C4 F3 1
BD3 C6 F3 1
BD3 C5 F3 1
BD3 C3 F3 1
BD3 C18 F4 1
BD3 C29 F4 1
BD3 C28 F4 1
BD3 N27 F4 1
BD3 N26 F4 1
BD3 C20 F5 1
BD3 C15 F5 1
BD3 C14 F5 1
BD3 N16 F5 1
BD3 C17 F5 1
BD3 O19 F5 1
BD3 C18 F5 1
BD3 C29 F5 1
BD3 C28 F5 1
BD3 N27 F5 1
BD3 N26 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BD3
_pdbe_chem_comp_rdkit_properties.exactmw 464.228
_pdbe_chem_comp_rdkit_properties.amw 464.530
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 62
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.348
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 236.099
_pdbe_chem_comp_rdkit_properties.tpsa 162.640
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.273
_pdbe_chem_comp_rdkit_properties.CrippenMR 123.893
_pdbe_chem_comp_rdkit_properties.chi0v 16.302
_pdbe_chem_comp_rdkit_properties.chi1v 8.426
_pdbe_chem_comp_rdkit_properties.chi2v 3.433
_pdbe_chem_comp_rdkit_properties.chi3v 3.433
_pdbe_chem_comp_rdkit_properties.chi4v 2.066
_pdbe_chem_comp_rdkit_properties.chi0n 44.302
_pdbe_chem_comp_rdkit_properties.chi1n 22.215
_pdbe_chem_comp_rdkit_properties.chi2n 3.433
_pdbe_chem_comp_rdkit_properties.chi3n 3.433
_pdbe_chem_comp_rdkit_properties.chi4n 2.066
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.150
_pdbe_chem_comp_rdkit_properties.kappa1 6.936
_pdbe_chem_comp_rdkit_properties.kappa2 10.195
_pdbe_chem_comp_rdkit_properties.kappa3 5.797
_pdbe_chem_comp_rdkit_properties.Phi 2.080
#
_pdbe_chem_comp_external_mappings.comp_id BD3
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id BD3
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BD3 C1 2.010 -1.693 -0.441 ETKDGv3 1
BD3 C2 3.140 -1.589 0.279 ETKDGv3 2
BD3 C3 1.485 -0.496 -1.145 ETKDGv3 3
BD3 C4 3.828 -0.288 0.399 ETKDGv3 4
BD3 C5 2.089 0.699 -1.012 ETKDGv3 5
BD3 C6 3.325 0.798 -0.201 ETKDGv3 6
BD3 C7 1.517 1.914 -1.624 ETKDGv3 7
BD3 C12 1.213 5.431 -2.299 ETKDGv3 8
BD3 N13 2.135 6.112 -1.698 ETKDGv3 9
BD3 C15 0.316 -3.221 0.721 ETKDGv3 10
BD3 C17 -1.380 -1.430 0.103 ETKDGv3 11
BD3 C18 -1.691 0.020 0.135 ETKDGv3 12
BD3 N22 1.399 -5.078 2.090 ETKDGv3 13
BD3 C23 2.211 -5.557 3.209 ETKDGv3 14
BD3 C24 2.339 -7.050 3.177 ETKDGv3 15
BD3 C30 0.011 0.923 1.896 ETKDGv3 16
BD3 C31 -3.419 3.116 -0.932 ETKDGv3 17
BD3 C32 -3.586 2.908 -2.450 ETKDGv3 18
BD3 C33 -2.823 4.519 -0.686 ETKDGv3 19
BD3 C34 -4.792 3.022 -0.245 ETKDGv3 20
BD3 N25 1.311 -7.793 3.370 ETKDGv3 21
BD3 C20 1.120 -3.683 1.915 ETKDGv3 22
BD3 O21 1.595 -2.839 2.725 ETKDGv3 23
BD3 N16 -0.478 -2.025 1.044 ETKDGv3 24
BD3 O19 -1.905 -2.151 -0.789 ETKDGv3 25
BD3 C29 -2.620 0.598 -0.618 ETKDGv3 26
BD3 C28 -2.511 2.040 -0.362 ETKDGv3 27
BD3 N27 -1.578 2.267 0.506 ETKDGv3 28
BD3 N26 -0.990 1.046 0.845 ETKDGv3 29
BD3 C14 1.241 -2.992 -0.501 ETKDGv3 30
BD3 O11 2.014 3.194 -1.429 ETKDGv3 31
BD3 C10 1.139 3.971 -2.174 ETKDGv3 32
BD3 N9 0.235 3.254 -2.751 ETKDGv3 33
BD3 N8 0.477 1.922 -2.394 ETKDGv3 34
BD3 H2 3.547 -2.449 0.796 ETKDGv3 35
BD3 H3 0.586 -0.590 -1.742 ETKDGv3 36
BD3 H4 4.732 -0.212 0.989 ETKDGv3 37
BD3 H6 3.832 1.749 -0.092 ETKDGv3 38
BD3 H12 0.480 5.950 -2.902 ETKDGv3 39
BD3 HN13 2.864 5.658 -1.103 ETKDGv3 40
BD3 H15 -0.391 -4.039 0.459 ETKDGv3 41
BD3 HN22 1.027 -5.756 1.387 ETKDGv3 42
BD3 H23 1.744 -5.250 4.170 ETKDGv3 43
BD3 H23A 3.224 -5.105 3.145 ETKDGv3 44
BD3 H24 3.311 -7.503 3.000 ETKDGv3 45
BD3 H30 0.469 1.915 2.094 ETKDGv3 46
BD3 H30A 0.819 0.234 1.584 ETKDGv3 47
BD3 H30B -0.468 0.561 2.829 ETKDGv3 48
BD3 H32 -4.211 3.716 -2.889 ETKDGv3 49
BD3 H32A -2.597 2.918 -2.956 ETKDGv3 50
BD3 H32B -4.083 1.940 -2.670 ETKDGv3 51
BD3 H33 -3.478 5.306 -1.119 ETKDGv3 52
BD3 H33A -2.719 4.720 0.402 ETKDGv3 53
BD3 H33B -1.819 4.605 -1.156 ETKDGv3 54
BD3 H34 -4.690 3.167 0.853 ETKDGv3 55
BD3 H34A -5.253 2.026 -0.422 ETKDGv3 56
BD3 H34B -5.482 3.799 -0.639 ETKDGv3 57
BD3 HN25 1.396 -8.820 3.353 ETKDGv3 58
BD3 HN16 -0.487 -1.662 2.022 ETKDGv3 59
BD3 H29 -3.302 0.100 -1.294 ETKDGv3 60
BD3 H14 0.623 -3.005 -1.424 ETKDGv3 61
BD3 H14A 1.950 -3.843 -0.603 ETKDGv3 62
#