data_BE1
#
_chem_comp.id BE1
_chem_comp.name "N-BROMOACETYL-AMINOETHYL PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H9 Br N O5 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-03-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 261.996
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BE1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1C7Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BE1 C1 C1 C 0 1 N N N N N N 52.230 -10.417 24.054 1.023 1.404 -3.095 C1 BE1 1
BE1 C2 C2 C 0 1 N N N N N N 52.803 -10.842 22.722 1.436 0.316 -2.138 C2 BE1 2
BE1 C3 C3 C 0 1 N N N N N N 53.582 -12.854 21.533 0.900 -1.476 -0.578 C3 BE1 3
BE1 C4 C4 C 0 1 N N N N N N 54.655 -13.848 21.960 1.025 -0.895 0.831 C4 BE1 4
BE1 O2 O2 O 0 1 N N N N N N 53.757 -10.120 22.386 2.612 0.102 -1.934 O2 BE1 5
BE1 N N N 0 1 N N N N N N 52.999 -12.153 22.673 0.499 -0.418 -1.508 N BE1 6
BE1 O4 O4 O 0 1 N N N N N N 55.413 -13.411 23.097 -0.234 -0.356 1.238 O4 BE1 7
BE1 P P P 0 1 N N N N N N 56.975 -13.699 23.341 -0.030 0.234 2.721 P BE1 8
BE1 O1P O1P O 0 1 N N N N N N 57.340 -15.091 23.014 1.007 1.288 2.694 O1P BE1 9
BE1 O2P O2P O 0 1 N N N N N N 57.150 -13.182 24.727 -1.418 0.861 3.244 O2P BE1 10
BE1 O3P O3P O 0 1 N N N N N N 57.978 -12.626 22.685 0.431 -0.948 3.711 O3P BE1 11
BE1 BR BR BR 0 0 N Y N N N N 52.134 -9.022 24.527 -1.295 -0.092 -1.819 BR BE1 12
BE1 H11 H11 H 0 1 N N N N N N 51.374 -11.064 24.355 1.912 1.885 -3.504 H11 BE1 13
BE1 H12 H12 H 0 1 N N N N N N 53.015 -10.384 24.844 0.439 0.971 -3.907 H12 BE1 14
BE1 H13 H13 H 0 1 N N N N N N 51.944 -9.339 24.050 0.420 2.143 -2.567 H13 BE1 15
BE1 H31 H31 H 0 1 N N N N N N 53.974 -12.136 20.774 0.149 -2.266 -0.580 H31 BE1 16
BE1 H32 H32 H 0 1 N N N N N N 52.795 -13.348 20.917 1.861 -1.887 -0.888 H32 BE1 17
BE1 H41 H41 H 0 1 N N N N N N 54.212 -14.854 22.142 1.324 -1.682 1.524 H41 BE1 18
BE1 H42 H42 H 0 1 N N N N N N 55.328 -14.095 21.106 1.776 -0.105 0.833 H42 BE1 19
BE1 HOP2 2HOP H 0 0 N N N N N N 58.073 -13.352 24.871 -1.253 1.202 4.134 HOP2 BE1 20
BE1 HOP3 3HOP H 0 0 N N N N N N 58.901 -12.796 22.829 -0.271 -1.612 3.700 HOP3 BE1 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BE1 C1 C2 SING N N 1
BE1 C1 H11 SING N N 2
BE1 C1 H12 SING N N 3
BE1 C1 H13 SING N N 4
BE1 C2 O2 DOUB N N 5
BE1 C2 N SING N N 6
BE1 C3 C4 SING N N 7
BE1 C3 N SING N N 8
BE1 C3 H31 SING N N 9
BE1 C3 H32 SING N N 10
BE1 C4 O4 SING N N 11
BE1 C4 H41 SING N N 12
BE1 C4 H42 SING N N 13
BE1 N BR SING N N 14
BE1 O4 P SING N N 15
BE1 P O1P DOUB N N 16
BE1 P O2P SING N N 17
BE1 P O3P SING N N 18
BE1 O2P HOP2 SING N N 19
BE1 O3P HOP3 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BE1 SMILES ACDLabs 10.04 O=P(O)(OCCN(Br)C(=O)C)O
BE1 SMILES_CANONICAL CACTVS 3.341 CC(=O)N(Br)CCO[P](O)(O)=O
BE1 SMILES CACTVS 3.341 CC(=O)N(Br)CCO[P](O)(O)=O
BE1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)N(CCOP(=O)(O)O)Br
BE1 SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)N(CCOP(=O)(O)O)Br
BE1 InChI InChI 1.03 InChI=1S/C4H9BrNO5P/c1-4(7)6(5)2-3-11-12(8,9)10/h2-3H2,1H3,(H2,8,9,10)
BE1 InChIKey InChI 1.03 DPNUMPJWOVYEOX-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BE1 "SYSTEMATIC NAME" ACDLabs 10.04 "2-[acetyl(bromo)amino]ethyl dihydrogen phosphate"
BE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-(bromo-ethanoyl-amino)ethyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BE1 'Create component' 2000-03-08 EBI
BE1 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id BE1
_pdbe_chem_comp_drugbank_details.drugbank_id DB02257
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'N-Bromoacetyl-Aminoethyl Phosphate'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BE1
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02257
_pdbe_chem_comp_drugbank_classification.parent Phosphoethanolamines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organic phosphoric acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phosphoethanolamines. These are compounds containing a phosphate linked to the second carbon of an ethanolamine.'
#
_pdbe_chem_comp_drugbank_targets.comp_id BE1
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02257
_pdbe_chem_comp_drugbank_targets.name 'Glucose-6-phosphate isomerase B'
_pdbe_chem_comp_drugbank_targets.organism 'Geobacillus stearothermophilus'
_pdbe_chem_comp_drugbank_targets.uniprot_id P13376
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BE1 C1 C 11.600 1.875 1
BE1 C2 C 11.600 0.375 2
BE1 C3 C 9.002 0.375 3
BE1 C4 C 7.702 -0.375 4
BE1 O2 O 12.899 -0.375 5
BE1 N N 10.301 -0.375 6
BE1 O4 O 6.404 0.375 7
BE1 P P 5.104 -0.375 8
BE1 O1P O 3.805 -1.125 9
BE1 O2P O 4.354 0.924 10
BE1 O3P O 5.854 -1.674 11
BE1 BR Br 10.301 -1.875 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BE1 C1 C2 SINGLE NONE 1
BE1 C2 O2 DOUBLE NONE 2
BE1 C2 N SINGLE NONE 3
BE1 C3 C4 SINGLE NONE 4
BE1 C3 N SINGLE NONE 5
BE1 C4 O4 SINGLE NONE 6
BE1 N BR SINGLE NONE 7
BE1 O4 P SINGLE NONE 8
BE1 P O1P DOUBLE NONE 9
BE1 P O2P SINGLE NONE 10
BE1 P O3P SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BE1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
BE1 phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BE1 N F1 1
BE1 C2 F1 1
BE1 O2 F1 1
BE1 C1 F1 1
BE1 O4 F2 1
BE1 P F2 1
BE1 O1P F2 1
BE1 O2P F2 1
BE1 O3P F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BE1
_pdbe_chem_comp_rdkit_properties.exactmw 260.940
_pdbe_chem_comp_rdkit_properties.amw 261.996
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.750
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 90.903
_pdbe_chem_comp_rdkit_properties.tpsa 87.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.254
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.310
_pdbe_chem_comp_rdkit_properties.chi0v 7.794
_pdbe_chem_comp_rdkit_properties.chi1v 4.425
_pdbe_chem_comp_rdkit_properties.chi2v 1.294
_pdbe_chem_comp_rdkit_properties.chi3v 1.294
_pdbe_chem_comp_rdkit_properties.chi4v 0.392
_pdbe_chem_comp_rdkit_properties.chi0n 14.314
_pdbe_chem_comp_rdkit_properties.chi1n 6.571
_pdbe_chem_comp_rdkit_properties.chi2n 0.480
_pdbe_chem_comp_rdkit_properties.chi3n 0.480
_pdbe_chem_comp_rdkit_properties.chi4n 0.167
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.060
_pdbe_chem_comp_rdkit_properties.kappa1 3.666
_pdbe_chem_comp_rdkit_properties.kappa2 4.935
_pdbe_chem_comp_rdkit_properties.kappa3 6.751
_pdbe_chem_comp_rdkit_properties.Phi 1.508
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BE1 UniChem DrugBank DB02257
BE1 UniChem PDBe BE1
BE1 UniChem ZINC ZINC000003874382
BE1 UniChem PubChem 4354
BE1 UniChem 'Probes And Drugs' PD008098
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BE1 C1 -2.712 0.801 -0.002 ETKDGv3 1
BE1 C2 -2.210 -0.103 -1.089 ETKDGv3 2
BE1 C3 -0.728 -1.459 0.495 ETKDGv3 3
BE1 C4 0.692 -0.896 0.530 ETKDGv3 4
BE1 O2 -2.574 0.121 -2.275 ETKDGv3 5
BE1 N -1.350 -1.224 -0.811 ETKDGv3 6
BE1 O4 0.653 0.496 0.323 ETKDGv3 7
BE1 P 2.243 1.105 0.423 ETKDGv3 8
BE1 O1P 2.784 0.912 1.823 ETKDGv3 9
BE1 O2P 3.248 0.328 -0.698 ETKDGv3 10
BE1 O3P 2.209 2.760 0.070 ETKDGv3 11
BE1 BR -0.886 -2.399 -2.230 ETKDGv3 12
BE1 H11 -3.352 1.603 -0.429 ETKDGv3 13
BE1 H12 -3.319 0.216 0.720 ETKDGv3 14
BE1 H13 -1.861 1.278 0.524 ETKDGv3 15
BE1 H31 -0.684 -2.554 0.684 ETKDGv3 16
BE1 H32 -1.330 -1.020 1.317 ETKDGv3 17
BE1 H41 1.128 -1.137 1.526 ETKDGv3 18
BE1 H42 1.288 -1.398 -0.265 ETKDGv3 19
BE1 HOP2 3.601 -0.467 -0.224 ETKDGv3 20
BE1 HOP3 3.159 3.038 0.072 ETKDGv3 21
#