data_BE2
#
_chem_comp.id BE2
_chem_comp.name '2-AMINOBENZOIC ACID'
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C7 H7 N O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces 6AB
_chem_comp.formula_weight 137.136
_chem_comp.one_letter_code X
_chem_comp.three_letter_code BE2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AN9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BE2 C C C 0 1 N N N Y N Y 38.987 36.978 63.846 -0.224 -0.008 -1.631 C BE2 1
BE2 O O1 O 0 1 N N N Y N Y 39.642 37.073 62.793 0.834 -0.093 -2.221 O1 BE2 2
BE2 OXT O2 O 0 1 N Y N Y N Y 38.881 35.895 64.445 -1.376 0.082 -2.324 O2 BE2 3
BE2 C1 C1 C 0 1 Y N N Y N N 38.309 38.226 64.420 -0.248 -0.004 -0.158 C1 BE2 4
BE2 CA C2 C 0 1 Y N N Y N N 38.108 38.409 65.834 0.952 0.015 0.567 C2 BE2 5
BE2 C3 C3 C 0 1 Y N N N N N 37.487 39.556 66.306 0.915 0.019 1.956 C3 BE2 6
BE2 N N2 N 0 1 N N N Y Y N 38.451 37.479 66.682 2.170 0.036 -0.098 N2 BE2 7
BE2 C4 C4 C 0 1 Y N N N N N 37.062 40.529 65.415 -0.295 -0.001 2.616 C4 BE2 8
BE2 C5 C5 C 0 1 Y N N N N N 37.254 40.360 64.041 -1.483 -0.026 1.902 C5 BE2 9
BE2 C6 C6 C 0 1 Y N N N N N 37.873 39.216 63.551 -1.468 -0.031 0.525 C6 BE2 10
BE2 HXT HO2 H 0 1 N Y N Y N Y 38.380 35.822 65.249 -1.361 0.079 -3.291 HO2 BE2 11
BE2 H3 H3 H 0 1 N N N N N N 37.331 39.694 67.389 1.836 0.039 2.520 H3 BE2 12
BE2 H HN21 H 0 0 N N N Y Y N 38.308 37.608 67.683 2.995 0.139 0.402 HN21 BE2 13
BE2 H2 HN22 H 0 0 N Y N Y Y N 39.433 37.253 66.526 2.197 -0.055 -1.063 HN22 BE2 14
BE2 H4 H4 H 0 1 N N N N N N 36.570 41.438 65.799 -0.318 0.001 3.696 H4 BE2 15
BE2 H5 H5 H 0 1 N N N N N N 36.913 41.137 63.336 -2.426 -0.043 2.428 H5 BE2 16
BE2 H6 H6 H 0 1 N N N N N N 38.019 39.092 62.464 -2.396 -0.051 -0.026 H6 BE2 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BE2 C O DOUB N N 1
BE2 C OXT SING N N 2
BE2 C C1 SING N N 3
BE2 OXT HXT SING N N 4
BE2 C1 CA DOUB Y N 5
BE2 C1 C6 SING Y N 6
BE2 CA C3 SING Y N 7
BE2 CA N SING N N 8
BE2 C3 C4 DOUB Y N 9
BE2 C3 H3 SING N N 10
BE2 N H SING N N 11
BE2 N H2 SING N N 12
BE2 C4 C5 SING Y N 13
BE2 C4 H4 SING N N 14
BE2 C5 C6 DOUB Y N 15
BE2 C5 H5 SING N N 16
BE2 C6 H6 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BE2 SMILES ACDLabs 10.04 'O=C(O)c1ccccc1N'
BE2 SMILES_CANONICAL CACTVS 3.341 'Nc1ccccc1C(O)=O'
BE2 SMILES CACTVS 3.341 'Nc1ccccc1C(O)=O'
BE2 SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1ccc(c(c1)C(=O)O)N'
BE2 SMILES 'OpenEye OEToolkits' 1.5.0 'c1ccc(c(c1)C(=O)O)N'
BE2 InChI InChI 1.03 'InChI=1S/C7H7NO2/c8-6-4-2-1-3-5(6)7(9)10/h1-4H,8H2,(H,9,10)'
BE2 InChIKey InChI 1.03 RWZYAGGXGHYGMB-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BE2 'SYSTEMATIC NAME' ACDLabs 10.04 '2-aminobenzoic acid'
BE2 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '2-aminobenzoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BE2 'Create component' 1999-07-08 EBI
BE2 'Modify descriptor' 2011-06-04 RCSB
BE2 'Modify backbone' 2023-11-03 PDBE
BE2 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 BE2 ? None 'Non-standard residue' 'Amino-acid side chain and backbone' 'Any position' ? ? ? ?
2 BE2 CYS None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' C SG ? ?
3 BE2 4HH None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' C SU ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id BE2
_pdbe_chem_comp_drugbank_details.drugbank_id DB04166
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Anthranilic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 118-92-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
BE2 '2-aminobenzoic acid' DrugBank ?
BE2 2-carboxyaniline DrugBank ?
BE2 'o-Aminobenzoic acid' DrugBank ?
BE2 o-carboxyaniline DrugBank ?
BE2 'Vitamin L1' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BE2
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04166
_pdbe_chem_comp_drugbank_classification.parent 'Aminobenzoic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as aminobenzoic acids. These are benzoic acids containing an amine group attached to the benzene moiety.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
BE2 DB04166 'L-amino-acid oxidase' Humans Q96RQ9 unknown 1
BE2 DB04166 'D-amino-acid oxidase' Humans P14920 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BE2 C C 6.404 1.410 1
BE2 O O 7.702 2.160 2
BE2 OXT O 5.104 2.160 3
BE2 C1 C 6.404 -0.090 4
BE2 CA C 5.104 -0.840 5
BE2 C3 C 5.104 -2.340 6
BE2 N N 3.805 -0.090 7
BE2 C4 C 6.404 -3.090 8
BE2 C5 C 7.702 -2.340 9
BE2 C6 C 7.702 -0.840 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BE2 C O DOUBLE NONE 1
BE2 C OXT SINGLE NONE 2
BE2 C C1 SINGLE NONE 3
BE2 C1 CA DOUBLE NONE 4
BE2 C1 C6 SINGLE NONE 5
BE2 CA C3 SINGLE NONE 6
BE2 CA N SINGLE NONE 7
BE2 C3 C4 DOUBLE NONE 8
BE2 C4 C5 SINGLE NONE 9
BE2 C5 C6 DOUBLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BE2 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
BE2 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BE2 C1 S1 1
BE2 CA S1 1
BE2 C3 S1 1
BE2 C4 S1 1
BE2 C5 S1 1
BE2 C6 S1 1
BE2 C1 F1 1
BE2 CA F1 1
BE2 C3 F1 1
BE2 C4 F1 1
BE2 C5 F1 1
BE2 C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BE2
_pdbe_chem_comp_rdkit_properties.exactmw 137.048
_pdbe_chem_comp_rdkit_properties.amw 137.138
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 68.130
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.532
_pdbe_chem_comp_rdkit_properties.CrippenMR 36.724
_pdbe_chem_comp_rdkit_properties.chi0v 4.764
_pdbe_chem_comp_rdkit_properties.chi1v 2.382
_pdbe_chem_comp_rdkit_properties.chi2v 0.872
_pdbe_chem_comp_rdkit_properties.chi3v 0.872
_pdbe_chem_comp_rdkit_properties.chi4v 0.454
_pdbe_chem_comp_rdkit_properties.chi0n 11.764
_pdbe_chem_comp_rdkit_properties.chi1n 5.685
_pdbe_chem_comp_rdkit_properties.chi2n 0.872
_pdbe_chem_comp_rdkit_properties.chi3n 0.872
_pdbe_chem_comp_rdkit_properties.chi4n 0.454
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 1.985
_pdbe_chem_comp_rdkit_properties.kappa2 2.390
_pdbe_chem_comp_rdkit_properties.kappa3 1.075
_pdbe_chem_comp_rdkit_properties.Phi 0.474
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BE2 UniChem ChEMBL CHEMBL14173
BE2 UniChem DrugBank DB04166
BE2 UniChem PDBe BE2
BE2 UniChem 'KEGG LIGAND' C00108
BE2 UniChem ChEBI 30754
BE2 UniChem ZINC ZINC000000047985
BE2 UniChem eMolecules 478088
BE2 UniChem fdasrs 0YS975XI6W
BE2 UniChem SureChEMBL SCHEMBL675
BE2 UniChem HMDB HMDB0001123
BE2 UniChem 'PubChem TPHARMA' 15146682
BE2 UniChem PubChem 227
BE2 UniChem Mcule MCULE-8970106555
BE2 UniChem NMRShiftDB 10008784
BE2 UniChem ACTor 118-92-3
BE2 UniChem ACTor 1321-11-5
BE2 UniChem Nikkaji J2.912B
BE2 UniChem BindingDb 50376751
BE2 UniChem 'EPA CompTox Dashboard' DTXSID8020094
BE2 UniChem MetaboLights MTBLC30754
BE2 UniChem BRENDA 13352
BE2 UniChem BRENDA 2263
BE2 UniChem BRENDA 4198
BE2 UniChem BRENDA 474
BE2 UniChem BRENDA 50159
BE2 UniChem BRENDA 5464
BE2 UniChem BRENDA 74338
BE2 UniChem BRENDA 90994
BE2 UniChem 'Probes And Drugs' PD006518
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BE2 C 1.870 0.594 0.495 ETKDGv3 1
BE2 O 2.792 0.242 -0.289 ETKDGv3 2
BE2 OXT 2.185 1.331 1.633 ETKDGv3 3
BE2 C1 0.453 0.294 0.185 ETKDGv3 4
BE2 CA 0.054 -0.815 -0.493 ETKDGv3 5
BE2 C3 -1.380 -0.982 -0.839 ETKDGv3 6
BE2 N 0.961 -1.870 -0.842 ETKDGv3 7
BE2 C4 -2.283 -0.073 -0.460 ETKDGv3 8
BE2 C5 -1.860 1.110 0.308 ETKDGv3 9
BE2 C6 -0.570 1.284 0.615 ETKDGv3 10
BE2 HXT 3.146 1.566 1.850 ETKDGv3 11
BE2 H3 -1.702 -1.853 -1.395 ETKDGv3 12
BE2 H 0.645 -2.642 -1.470 ETKDGv3 13
BE2 H2 1.886 -1.988 -0.376 ETKDGv3 14
BE2 H4 -3.327 -0.206 -0.711 ETKDGv3 15
BE2 H5 -2.596 1.841 0.619 ETKDGv3 16
BE2 H6 -0.275 2.167 1.169 ETKDGv3 17
#