data_BEF
#
_chem_comp.id BEF
_chem_comp.name "BERYLLIUM TRIFLUORIDE ION"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "Be F3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 66.007
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BEF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1LVK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BEF BE BE BE -1 0 N N N N N N 32.595 58.188 22.992 ? ? ? BE BEF 1
BEF F1 F1 F 0 1 N N N N N N 31.324 57.364 23.232 ? ? ? F1 BEF 2
BEF F2 F2 F 0 1 N N N N N N 33.110 58.885 24.291 ? ? ? F2 BEF 3
BEF F3 F3 F 0 1 N N N N N N 32.321 59.297 21.951 ? ? ? F3 BEF 4
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BEF BE F1 SING N N 1
BEF BE F2 SING N N 2
BEF BE F3 SING N N 3
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BEF SMILES ACDLabs 10.04 F[Be-](F)F
BEF SMILES_CANONICAL CACTVS 3.341 F[Be-](F)F
BEF SMILES CACTVS 3.341 F[Be-](F)F
BEF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[Be-](F)(F)F"
BEF SMILES "OpenEye OEToolkits" 1.5.0 "[Be-](F)(F)F"
BEF InChI InChI 1.03 InChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3
BEF InChIKey InChI 1.03 OGIAHMCCNXDTIE-UHFFFAOYSA-K
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BEF "SYSTEMATIC NAME" ACDLabs 10.04 trifluoroberyllate(1-)
BEF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 trifluoroberyllium
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BEF 'Create component' 1999-07-08 RCSB
BEF 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BEF BE Be 2.598 0.750 1
BEF F1 F 0.000 0.750 2
BEF F2 F 0.924 3.750 3
BEF F3 F 1.299 0.000 4
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BEF BE F1 SINGLE NONE 1
BEF BE F2 SINGLE NONE 2
BEF BE F3 SINGLE NONE 3
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id BEF
_pdbe_chem_comp_rdkit_properties.exactmw 66.008
_pdbe_chem_comp_rdkit_properties.amw 66.006
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtoms 4
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 22.870
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.880
_pdbe_chem_comp_rdkit_properties.CrippenMR 9.078
_pdbe_chem_comp_rdkit_properties.chi0v 1.841
_pdbe_chem_comp_rdkit_properties.chi1v 0.802
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 1.841
_pdbe_chem_comp_rdkit_properties.chi1n 0.802
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.041
_pdbe_chem_comp_rdkit_properties.kappa1 3.959
_pdbe_chem_comp_rdkit_properties.kappa2 1.297
_pdbe_chem_comp_rdkit_properties.kappa3 1062.537
_pdbe_chem_comp_rdkit_properties.Phi 1.283
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BEF UniChem PDBe BEF
BEF UniChem ChEBI 30498
BEF UniChem PubChem 152255
BEF UniChem PubChem 23624244
BEF UniChem ACTor 19181-26-1
BEF UniChem BRENDA 105511
BEF UniChem BRENDA 24463
BEF UniChem PubChem 3465631
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BEF BE 0.366 0.269 0.916 ETKDGv3 1
BEF F1 -0.377 1.592 0.465 ETKDGv3 2
BEF F2 -1.420 -1.156 0.230 ETKDGv3 3
BEF F3 1.432 -0.705 -0.142 ETKDGv3 4
#