data_BGH
#
_chem_comp.id BGH
_chem_comp.name
"[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type "RNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C13 H20 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id G
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-04
_chem_comp.pdbx_modified_date 2018-10-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 421.300
_chem_comp.one_letter_code G
_chem_comp.three_letter_code BGH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6EK0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BGH "C1'" C1 C 0 1 N N R N N N 239.432 258.190 242.003 0.198 -1.480 -0.680 "C1'" BGH 1
BGH C2 C2 C 0 1 N N N N N N 234.992 257.640 242.357 1.556 1.707 2.086 C2 BGH 2
BGH "C2'" C3 C 0 1 N N R N N N 239.179 259.643 241.676 0.036 -2.306 0.615 "C2'" BGH 3
BGH "C3'" C4 C 0 1 N N R N N N 240.248 260.301 242.498 -1.479 -2.249 0.910 "C3'" BGH 4
BGH C4 C5 C 0 1 N N N N N N 237.198 257.635 243.032 1.765 0.274 0.278 C4 BGH 5
BGH "C4'" C6 C 0 1 N N R N N N 241.411 259.407 242.270 -2.054 -1.395 -0.241 "C4'" BGH 6
BGH C5 C7 C 0 1 N N N N N N 236.773 257.177 244.364 3.025 0.786 0.007 C5 BGH 7
BGH "C5'" C8 C 0 1 N N N N N N 242.353 259.631 243.417 -3.182 -0.498 0.273 "C5'" BGH 8
BGH C6 C9 C 0 1 N N N N N N 235.325 256.956 244.577 3.540 1.795 0.835 C6 BGH 9
BGH C8 C10 C 0 1 N N N N N N 239.145 257.401 244.350 2.572 -0.840 -1.569 C8 BGH 10
BGH N1 N1 N 0 1 N N N N N N 234.537 257.224 243.540 2.787 2.242 1.861 N1 BGH 11
BGH N2 N2 N 0 1 N N N N N N 234.038 257.900 241.266 0.805 2.174 3.134 N2 BGH 12
BGH N3 N3 N 0 1 N N N N N N 236.280 257.843 242.092 1.068 0.758 1.319 N3 BGH 13
BGH N7 N4 N 0 1 N N N N N N 237.930 257.058 245.043 3.571 0.138 -1.119 N7 BGH 14
BGH N9 N5 N 0 1 N N N N N N 238.516 257.747 243.089 1.443 -0.708 -0.641 N9 BGH 15
BGH "O2'" O1 O 0 1 N N N N N N 239.442 259.915 240.313 0.455 -3.656 0.403 "O2'" BGH 16
BGH "O3'" O2 O 0 1 N N N N N N 240.565 261.636 242.181 -2.043 -3.562 0.892 "O3'" BGH 17
BGH "O4'" O3 O 0 1 N N N N N N 240.803 258.137 242.389 -0.942 -0.593 -0.697 "O4'" BGH 18
BGH "O5'" O4 O 0 1 N N N N N N 242.945 258.393 243.712 -3.728 0.252 -0.815 "O5'" BGH 19
BGH O6 O5 O 0 1 N N N N N N 234.801 256.583 245.636 4.647 2.268 0.623 O6 BGH 20
BGH OP1 O6 O 0 1 N N N N N N 244.196 258.732 245.871 -6.087 0.624 0.003 OP1 BGH 21
BGH OP2 O7 O 0 1 N N N N N N 241.927 257.857 245.992 -4.452 2.526 0.287 OP2 BGH 22
BGH P P1 P 0 1 N N N N N N 243.185 257.879 245.197 -4.936 1.301 -0.637 P BGH 23
BGH C71 C11 C 0 1 N N N N N N 238.152 256.687 246.353 4.776 0.372 -1.675 C71 BGH 24
BGH C72 C12 C 0 1 N N N N N N 237.504 255.548 247.067 5.261 -0.491 -2.812 C72 BGH 25
BGH "C6'" C13 C 0 1 N N N N N N 238.255 260.172 239.580 0.982 -4.291 1.569 "C6'" BGH 26
BGH O71 O8 O 0 1 N N N N N N 238.972 257.342 246.961 5.470 1.276 -1.261 O71 BGH 27
BGH H1 H1 H 0 1 N N N N N N 239.261 257.580 241.104 0.184 -2.132 -1.553 H1 BGH 28
BGH H2 H2 H 0 1 N N N N N N 238.173 259.958 241.991 0.602 -1.854 1.430 H2 BGH 29
BGH H3 H3 H 0 1 N N N N N N 239.959 260.234 243.557 -1.663 -1.769 1.871 H3 BGH 30
BGH H4 H4 H 0 1 N N N N N N 241.891 259.579 241.296 -2.414 -2.036 -1.046 H4 BGH 31
BGH H5 H5 H 0 1 N N N N N N 243.126 260.361 243.134 -3.963 -1.115 0.717 H5 BGH 32
BGH H6 H6 H 0 1 N N N N N N 241.800 260.003 244.292 -2.788 0.186 1.024 H6 BGH 33
BGH H7 H7 H 0 1 N N N N N N 239.836 256.550 244.260 2.252 -0.612 -2.586 H7 BGH 34
BGH H8 H8 H 0 1 N N N N N N 233.550 257.107 243.653 3.124 2.944 2.440 H8 BGH 35
BGH H9 H9 H 0 1 N N N N N N 234.369 258.214 240.376 1.153 2.877 3.705 H9 BGH 36
BGH H10 H10 H 0 1 N N N N N N 233.059 257.762 241.415 -0.074 1.801 3.305 H10 BGH 37
BGH H11 H11 H 0 1 N N N N N N 241.250 261.946 242.762 -2.992 -3.585 1.072 H11 BGH 38
BGH H13 H13 H 0 1 N N N N N N 242.033 258.395 246.768 -3.699 3.016 -0.072 H13 BGH 39
BGH H14 H14 H 0 1 N N N N N N 237.900 255.484 248.091 4.473 -1.185 -3.102 H14 BGH 40
BGH H15 H15 H 0 1 N N N N N N 236.417 255.709 247.104 5.520 0.141 -3.662 H15 BGH 41
BGH H16 H16 H 0 1 N N N N N N 237.718 254.611 246.532 6.140 -1.051 -2.493 H16 BGH 42
BGH H17 H17 H 0 1 N N N N N N 238.509 260.377 238.530 1.851 -3.737 1.923 H17 BGH 43
BGH H18 H18 H 0 1 N N N N N N 237.595 259.294 239.632 0.221 -4.310 2.348 H18 BGH 44
BGH H19 H19 H 0 1 N N N N N N 237.740 261.044 240.010 1.277 -5.312 1.325 H19 BGH 45
BGH OP3 OP3 O 0 1 N N N N N N 243.761 256.406 244.985 -5.378 1.860 -2.081 OP3 BGH 46
BGH H20 H20 H 0 1 N N N N N N 239.669 258.252 244.810 2.984 -1.848 -1.522 H20 BGH 47
BGH H12 H12 H 0 1 N N N N N N 244.644 256.358 245.332 -6.103 2.498 -2.051 H12 BGH 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BGH "C6'" "O2'" SING N N 1
BGH "O2'" "C2'" SING N N 2
BGH N2 C2 SING N N 3
BGH "C2'" "C1'" SING N N 4
BGH "C2'" "C3'" SING N N 5
BGH "C1'" "O4'" SING N N 6
BGH "C1'" N9 SING N N 7
BGH N3 C2 DOUB N N 8
BGH N3 C4 SING N N 9
BGH "O3'" "C3'" SING N N 10
BGH "C4'" "O4'" SING N N 11
BGH "C4'" "C3'" SING N N 12
BGH "C4'" "C5'" SING N N 13
BGH C2 N1 SING N N 14
BGH C4 N9 SING N N 15
BGH C4 C5 DOUB N N 16
BGH N9 C8 SING N N 17
BGH "C5'" "O5'" SING N N 18
BGH N1 C6 SING N N 19
BGH "O5'" P SING N N 20
BGH C8 N7 SING N N 21
BGH C5 C6 SING N N 22
BGH C5 N7 SING N N 23
BGH C6 O6 DOUB N N 24
BGH N7 C71 SING N N 25
BGH P OP1 DOUB N N 26
BGH P OP2 SING N N 27
BGH C71 O71 DOUB N N 28
BGH C71 C72 SING N N 29
BGH "C1'" H1 SING N N 30
BGH "C2'" H2 SING N N 31
BGH "C3'" H3 SING N N 32
BGH "C4'" H4 SING N N 33
BGH "C5'" H5 SING N N 34
BGH "C5'" H6 SING N N 35
BGH C8 H7 SING N N 36
BGH N1 H8 SING N N 37
BGH N2 H9 SING N N 38
BGH N2 H10 SING N N 39
BGH "O3'" H11 SING N N 40
BGH OP2 H13 SING N N 41
BGH C72 H14 SING N N 42
BGH C72 H15 SING N N 43
BGH C72 H16 SING N N 44
BGH "C6'" H17 SING N N 45
BGH "C6'" H18 SING N N 46
BGH "C6'" H19 SING N N 47
BGH P OP3 SING N N 48
BGH C8 H20 SING N N 49
BGH OP3 H12 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BGH InChI InChI 1.03 InChI=1S/C13H20N5O9P/c1-5(19)17-4-18(10-7(17)11(21)16-13(14)15-10)12-9(25-2)8(20)6(27-12)3-26-28(22,23)24/h6,8-9,12,20H,3-4H2,1-2H3,(H2,22,23,24)(H3,14,15,16,21)/t6-,8-,9-,12-/m1/s1
BGH InChIKey InChI 1.03 RRIGHVHFMJOEOI-WOUKDFQISA-N
BGH SMILES_CANONICAL CACTVS 3.385 CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O
BGH SMILES CACTVS 3.385 CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O
BGH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)OC
BGH SMILES "OpenEye OEToolkits" 2.0.6 CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)O)O)OC
#
_pdbx_chem_comp_identifier.comp_id BGH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BGH 'Create component' 2017-10-04 EBI
BGH 'Other modification' 2017-11-02 EBI
BGH 'Initial release' 2018-01-24 RCSB
BGH 'Other modification' 2018-10-20 EBI
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BGH "C1'" C 9.588 -0.919 1
BGH C2 C 5.104 0.964 2
BGH "C2'" C 8.708 -2.134 3
BGH "C3'" C 9.592 -3.346 4
BGH C4 C 7.702 0.964 5
BGH "C4'" C 11.018 -2.880 6
BGH C5 C 7.702 2.464 7
BGH "C5'" C 12.233 -3.760 8
BGH C6 C 6.404 3.214 9
BGH C8 C 9.997 1.714 10
BGH N1 N 5.104 2.464 11
BGH N2 N 3.805 0.214 12
BGH N3 N 6.404 0.214 13
BGH N7 N 9.122 2.921 14
BGH N9 N 9.122 0.507 15
BGH "O2'" O 7.208 -2.136 16
BGH "O3'" O 9.131 -4.773 17
BGH "O4'" O 11.015 -1.380 18
BGH "O5'" O 13.602 -3.147 19
BGH O6 O 6.404 4.714 20
BGH OP1 O 16.032 -4.906 21
BGH OP2 O 15.697 -2.812 22
BGH P P 14.817 -4.027 23
BGH C71 C 9.588 4.347 24
BGH C72 C 11.056 4.656 25
BGH "C6'" C 6.460 -3.437 26
BGH O71 O 8.586 5.463 27
BGH OP3 O 13.938 -5.242 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BGH "C6'" "O2'" SINGLE NONE 1
BGH "C2'" "O2'" SINGLE BEGINWEDGE 2
BGH N2 C2 SINGLE NONE 3
BGH "C2'" "C1'" SINGLE NONE 4
BGH "C2'" "C3'" SINGLE NONE 5
BGH "C1'" "O4'" SINGLE NONE 6
BGH "C1'" N9 SINGLE BEGINDASH 7
BGH N3 C2 DOUBLE NONE 8
BGH N3 C4 SINGLE NONE 9
BGH "C3'" "O3'" SINGLE BEGINWEDGE 10
BGH "C4'" "O4'" SINGLE NONE 11
BGH "C4'" "C3'" SINGLE NONE 12
BGH "C4'" "C5'" SINGLE BEGINDASH 13
BGH C2 N1 SINGLE NONE 14
BGH C4 N9 SINGLE NONE 15
BGH C4 C5 DOUBLE NONE 16
BGH N9 C8 SINGLE NONE 17
BGH "C5'" "O5'" SINGLE NONE 18
BGH N1 C6 SINGLE NONE 19
BGH "O5'" P SINGLE NONE 20
BGH C8 N7 SINGLE NONE 21
BGH C5 C6 SINGLE NONE 22
BGH C5 N7 SINGLE NONE 23
BGH C6 O6 DOUBLE NONE 24
BGH N7 C71 SINGLE NONE 25
BGH P OP1 DOUBLE NONE 26
BGH P OP2 SINGLE NONE 27
BGH C71 O71 DOUBLE NONE 28
BGH C71 C72 SINGLE NONE 29
BGH P OP3 SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BGH MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1NCN2[C@H]1CCCO1' InChI=1S/C9H12N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4,6,12H,1-3,5H2,(H,10,11,14)/t6-/m1/s1 OIJBALQIYQGIQC-ZCFIWIBFSA-N
BGH amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
BGH phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
BGH pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
BGH ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BGH "C1'" S1 1
BGH C2 S1 1
BGH "C2'" S1 1
BGH "C3'" S1 1
BGH C4 S1 1
BGH "C4'" S1 1
BGH C5 S1 1
BGH C6 S1 1
BGH C8 S1 1
BGH N1 S1 1
BGH N3 S1 1
BGH N7 S1 1
BGH N9 S1 1
BGH "O4'" S1 1
BGH O6 S1 1
BGH N7 F1 1
BGH C71 F1 1
BGH O71 F1 1
BGH C72 F1 1
BGH "O5'" F2 1
BGH P F2 1
BGH OP1 F2 1
BGH OP2 F2 1
BGH H1 F2 1
BGH C5 F3 1
BGH C4 F3 1
BGH N3 F3 1
BGH C2 F3 1
BGH N1 F3 1
BGH C6 F3 1
BGH "C2'" F4 1
BGH "C3'" F4 1
BGH "C4'" F4 1
BGH "O4'" F4 1
BGH "C1'" F4 1
BGH "C5'" F4 1
BGH "O5'" F4 1
BGH "O3'" F4 1
BGH "O2'" F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BGH
_pdbe_chem_comp_rdkit_properties.exactmw 421.100
_pdbe_chem_comp_rdkit_properties.amw 421.303
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.615
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 186.133
_pdbe_chem_comp_rdkit_properties.tpsa 200.770
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.549
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.873
_pdbe_chem_comp_rdkit_properties.chi0v 13.752
_pdbe_chem_comp_rdkit_properties.chi1v 8.034
_pdbe_chem_comp_rdkit_properties.chi2v 3.336
_pdbe_chem_comp_rdkit_properties.chi3v 3.336
_pdbe_chem_comp_rdkit_properties.chi4v 2.236
_pdbe_chem_comp_rdkit_properties.chi0n 32.858
_pdbe_chem_comp_rdkit_properties.chi1n 16.139
_pdbe_chem_comp_rdkit_properties.chi2n 3.021
_pdbe_chem_comp_rdkit_properties.chi3n 3.021
_pdbe_chem_comp_rdkit_properties.chi4n 2.041
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.060
_pdbe_chem_comp_rdkit_properties.kappa1 7.020
_pdbe_chem_comp_rdkit_properties.kappa2 7.403
_pdbe_chem_comp_rdkit_properties.kappa3 3.753
_pdbe_chem_comp_rdkit_properties.Phi 1.856
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BGH UniChem PDBe BGH
BGH UniChem PubChem 137349004
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BGH "C1'" 0.228 0.850 1.524 ETKDGv3 1
BGH C2 -0.803 -0.370 -2.621 ETKDGv3 2
BGH "C2'" 0.735 -0.541 1.860 ETKDGv3 3
BGH "C3'" 2.233 -0.335 1.833 ETKDGv3 4
BGH C4 -1.391 0.349 -0.425 ETKDGv3 5
BGH "C4'" 2.394 0.806 0.819 ETKDGv3 6
BGH C5 -2.665 0.500 -0.693 ETKDGv3 7
BGH "C5'" 2.861 0.291 -0.549 ETKDGv3 8
BGH C6 -3.143 0.260 -2.062 ETKDGv3 9
BGH C8 -2.337 1.285 1.472 ETKDGv3 10
BGH N1 -2.183 -0.216 -3.016 ETKDGv3 11
BGH N2 0.167 -0.809 -3.570 ETKDGv3 12
BGH N3 -0.435 -0.092 -1.400 ETKDGv3 13
BGH N7 -3.348 1.064 0.429 ETKDGv3 14
BGH N9 -1.089 0.792 0.890 ETKDGv3 15
BGH "O2'" 0.261 -0.941 3.135 ETKDGv3 16
BGH "O3'" 2.706 0.087 3.089 ETKDGv3 17
BGH "O4'" 1.156 1.470 0.663 ETKDGv3 18
BGH "O5'" 4.184 -0.182 -0.448 ETKDGv3 19
BGH O6 -4.328 0.498 -2.411 ETKDGv3 20
BGH OP1 6.070 -1.293 -1.888 ETKDGv3 21
BGH OP2 3.651 -2.193 -2.292 ETKDGv3 22
BGH P 4.626 -0.851 -1.952 ETKDGv3 23
BGH C71 -4.766 1.142 0.648 ETKDGv3 24
BGH C72 -5.314 1.963 1.773 ETKDGv3 25
BGH "C6'" 0.258 -2.348 3.230 ETKDGv3 26
BGH O71 -5.560 0.467 -0.059 ETKDGv3 27
BGH H1 0.160 1.458 2.455 ETKDGv3 28
BGH H2 0.441 -1.244 1.042 ETKDGv3 29
BGH H3 2.757 -1.266 1.512 ETKDGv3 30
BGH H4 3.144 1.543 1.184 ETKDGv3 31
BGH H5 2.811 1.136 -1.272 ETKDGv3 32
BGH H6 2.169 -0.516 -0.879 ETKDGv3 33
BGH H7 -2.253 2.369 1.700 ETKDGv3 34
BGH H8 -2.476 -0.418 -3.998 ETKDGv3 35
BGH H9 1.170 -0.910 -3.296 ETKDGv3 36
BGH H10 -0.114 -1.031 -4.550 ETKDGv3 37
BGH H11 2.893 -0.733 3.617 ETKDGv3 38
BGH H13 3.873 -2.437 -3.225 ETKDGv3 39
BGH H14 -6.400 2.144 1.628 ETKDGv3 40
BGH H15 -4.795 2.943 1.812 ETKDGv3 41
BGH H16 -5.161 1.427 2.732 ETKDGv3 42
BGH H17 -0.021 -2.632 4.265 ETKDGv3 43
BGH H18 -0.498 -2.788 2.543 ETKDGv3 44
BGH H19 1.265 -2.774 3.023 ETKDGv3 45
BGH OP3 4.451 0.301 -3.181 ETKDGv3 46
BGH H20 -2.585 0.704 2.385 ETKDGv3 47
BGH H12 5.004 1.069 -2.888 ETKDGv3 48
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