data_BIG
#
_chem_comp.id BIG
_chem_comp.name (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H25 N5 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "butylthio-DADMe-Immucillin A"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-07-10
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 335.468
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BIG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3DP9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BIG C2 C2 C 0 1 Y N N N N N -1.321 -4.128 5.295 4.595 -2.135 1.293 C2 BIG 1
BIG C5 C5 C 0 1 Y N N N N N -3.934 -3.464 4.593 4.847 -0.123 -0.471 C5 BIG 2
BIG C4 C4 C 0 1 Y N N N N N -3.235 -2.914 5.756 3.603 -0.736 -0.240 C4 BIG 3
BIG C8 C8 C 0 1 Y N N N N N -5.326 -2.046 5.613 3.338 0.887 -1.785 C8 BIG 4
BIG "O3'" "O3'" O 0 1 N N N N N N -1.263 2.082 8.214 -0.350 2.625 1.856 "O3'" BIG 5
BIG "C3'" "C3'" C 0 1 N N R N N N -1.219 1.114 7.158 -0.825 2.181 0.584 "C3'" BIG 6
BIG "C4'" "C4'" C 0 1 N N S N N N -2.117 1.510 5.992 -1.686 0.912 0.747 "C4'" BIG 7
BIG "C5'" "C5'" C 0 1 N N N N N N -1.644 0.896 4.676 -3.087 1.143 0.177 "C5'" BIG 8
BIG "S5'" "S5'" S 0 1 N N N N N N -0.393 1.862 3.883 -4.123 -0.308 0.512 "S5'" BIG 9
BIG C20 C20 C 0 1 N N N N N N -1.338 3.108 3.054 -5.716 0.149 -0.226 C20 BIG 10
BIG C21 C21 C 0 1 N N N N N N -0.402 4.151 2.453 -6.717 -0.990 -0.025 C21 BIG 11
BIG C22 C22 C 0 1 N N N N N N -1.135 5.457 2.161 -8.061 -0.605 -0.648 C22 BIG 12
BIG C23 C23 C 0 1 N N N N N N -0.977 5.826 0.704 -9.061 -1.744 -0.446 C23 BIG 13
BIG "C1'" "C1'" C 0 1 N N N N N N -3.459 0.879 6.322 -0.951 -0.178 -0.063 "C1'" BIG 14
BIG "N1'" "N1'" N 0 1 N N N N N N -3.255 0.114 7.571 0.460 0.283 -0.116 "N1'" BIG 15
BIG "C2'" "C2'" C 0 1 N N N N N N -1.825 -0.155 7.709 0.357 1.752 -0.311 "C2'" BIG 16
BIG C10 C10 C 0 1 N N N N N N -3.975 -1.176 7.647 1.178 -0.347 -1.232 C10 BIG 17
BIG N7 N7 N 0 1 Y N N N N N -5.158 -2.903 4.555 4.651 0.858 -1.416 N7 BIG 18
BIG C6 C6 C 0 1 Y N N N N N -3.159 -4.431 3.790 5.955 -0.589 0.245 C6 BIG 19
BIG N6 N6 N 0 1 N N N N N N -3.684 -5.023 2.689 7.206 -0.022 0.060 N6 BIG 20
BIG N3 N3 N 0 1 Y N N N N N -1.962 -3.258 6.082 3.524 -1.733 0.646 N3 BIG 21
BIG C9 C9 C 0 1 Y N N N N N -4.176 -1.981 6.396 2.651 -0.054 -1.111 C9 BIG 22
BIG N1 N1 N 0 1 Y N N N N N -1.892 -4.695 4.204 5.782 -1.586 1.107 N1 BIG 23
BIG H2 H2 H 0 1 N N N N N N -0.302 -4.391 5.539 4.500 -2.940 2.007 H2 BIG 24
BIG H8 H8 H 0 1 N N N N N N -6.232 -1.494 5.813 2.913 1.564 -2.512 H8 BIG 25
BIG "HO3'" "HO3'" H 0 0 N N N N N N -1.273 1.636 9.053 0.198 3.421 1.815 "HO3'" BIG 26
BIG "H3'" "H3'" H 0 1 N N N N N N -0.178 1.017 6.815 -1.401 2.970 0.099 "H3'" BIG 27
BIG "H4'" "H4'" H 0 1 N N N N N N -2.133 2.603 5.870 -1.747 0.628 1.797 "H4'" BIG 28
BIG "H5'" "H5'" H 0 1 N N N N N N -1.231 -0.102 4.887 -3.530 2.022 0.646 "H5'" BIG 29
BIG "H5'A" "H5'A" H 0 0 N N N N N N -2.510 0.850 3.999 -3.020 1.301 -0.900 "H5'A" BIG 30
BIG H20 H20 H 0 1 N N N N N N -1.930 2.643 2.252 -6.093 1.053 0.253 H20 BIG 31
BIG H20A H20A H 0 0 N N N N N N -2.010 3.595 3.776 -5.583 0.332 -1.293 H20A BIG 32
BIG H21 H21 H 0 1 N N N N N N 0.410 4.352 3.167 -6.340 -1.894 -0.504 H21 BIG 33
BIG H21A H21A H 0 0 N N N N N N -0.006 3.756 1.506 -6.850 -1.173 1.041 H21A BIG 34
BIG H22 H22 H 0 1 N N N N N N -2.204 5.333 2.390 -8.437 0.299 -0.168 H22 BIG 35
BIG H22A H22A H 0 0 N N N N N N -0.708 6.257 2.784 -7.928 -0.422 -1.714 H22A BIG 36
BIG H23 H23 H 0 1 N N N N N N -0.939 6.921 0.605 -10.019 -1.470 -0.890 H23 BIG 37
BIG H23A H23A H 0 0 N N N N N N -0.045 5.390 0.314 -8.685 -2.648 -0.926 H23A BIG 38
BIG H23B H23B H 0 0 N N N N N N -1.832 5.436 0.132 -9.194 -1.927 0.620 H23B BIG 39
BIG "H1'" "H1'" H 0 1 N N N N N N -4.227 1.654 6.463 -1.018 -1.140 0.445 "H1'" BIG 40
BIG "H1'A" "H1'A" H 0 0 N N N N N N -3.808 0.229 5.506 -1.366 -0.249 -1.069 "H1'A" BIG 41
BIG "H2'" "H2'" H 0 1 N N N N N N -1.514 -1.044 7.141 0.148 1.983 -1.355 "H2'" BIG 42
BIG "H2'A" "H2'A" H 0 0 N N N N N N -1.514 -0.383 8.739 1.276 2.243 0.011 "H2'A" BIG 43
BIG H10 H10 H 0 1 N N N N N N -3.398 -1.812 8.334 1.019 -1.425 -1.204 H10 BIG 44
BIG H10A H10A H 0 0 N N N N N N -4.995 -0.894 7.949 0.805 0.051 -2.175 H10A BIG 45
BIG HN7 HN7 H 0 1 N N N N N N -5.847 -3.086 3.854 5.342 1.442 -1.765 HN7 BIG 46
BIG HN6 HN6 H 0 1 N N N N N N -3.813 -4.339 1.972 7.321 0.705 -0.572 HN6 BIG 47
BIG HN6A HN6A H 0 0 N N N N N N -3.060 -5.733 2.363 7.968 -0.354 0.561 HN6A BIG 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BIG C2 N3 DOUB Y N 1
BIG C2 N1 SING Y N 2
BIG C5 C4 DOUB Y N 3
BIG C5 N7 SING Y N 4
BIG C5 C6 SING Y N 5
BIG C4 N3 SING Y N 6
BIG C4 C9 SING Y N 7
BIG C8 N7 SING Y N 8
BIG C8 C9 DOUB Y N 9
BIG "O3'" "C3'" SING N N 10
BIG "C3'" "C4'" SING N N 11
BIG "C3'" "C2'" SING N N 12
BIG "C4'" "C5'" SING N N 13
BIG "C4'" "C1'" SING N N 14
BIG "C5'" "S5'" SING N N 15
BIG "S5'" C20 SING N N 16
BIG C20 C21 SING N N 17
BIG C21 C22 SING N N 18
BIG C22 C23 SING N N 19
BIG "C1'" "N1'" SING N N 20
BIG "N1'" "C2'" SING N N 21
BIG "N1'" C10 SING N N 22
BIG C10 C9 SING N N 23
BIG C6 N6 SING N N 24
BIG C6 N1 DOUB Y N 25
BIG C2 H2 SING N N 26
BIG C8 H8 SING N N 27
BIG "O3'" "HO3'" SING N N 28
BIG "C3'" "H3'" SING N N 29
BIG "C4'" "H4'" SING N N 30
BIG "C5'" "H5'" SING N N 31
BIG "C5'" "H5'A" SING N N 32
BIG C20 H20 SING N N 33
BIG C20 H20A SING N N 34
BIG C21 H21 SING N N 35
BIG C21 H21A SING N N 36
BIG C22 H22 SING N N 37
BIG C22 H22A SING N N 38
BIG C23 H23 SING N N 39
BIG C23 H23A SING N N 40
BIG C23 H23B SING N N 41
BIG "C1'" "H1'" SING N N 42
BIG "C1'" "H1'A" SING N N 43
BIG "C2'" "H2'" SING N N 44
BIG "C2'" "H2'A" SING N N 45
BIG C10 H10 SING N N 46
BIG C10 H10A SING N N 47
BIG N7 HN7 SING N N 48
BIG N6 HN6 SING N N 49
BIG N6 HN6A SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BIG SMILES ACDLabs 10.04 S(CCCC)CC3CN(Cc2cnc1c2ncnc1N)CC3O
BIG SMILES_CANONICAL CACTVS 3.341 CCCCSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23
BIG SMILES CACTVS 3.341 CCCCSC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23
BIG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCSC[C@H]1C[N@](C[C@@H]1O)Cc2c[nH]c3c2ncnc3N
BIG SMILES "OpenEye OEToolkits" 1.5.0 CCCCSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N
BIG InChI InChI 1.03 InChI=1S/C16H25N5OS/c1-2-3-4-23-9-12-7-21(8-13(12)22)6-11-5-18-15-14(11)19-10-20-16(15)17/h5,10,12-13,18,22H,2-4,6-9H2,1H3,(H2,17,19,20)/t12-,13+/m1/s1
BIG InChIKey InChI 1.03 LTSUEVPGSXUJHT-OLZOCXBDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BIG "SYSTEMATIC NAME" ACDLabs 10.04 (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol
BIG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (1S,3R,4S)-1-[(4-amino-5H-pyrrolo[5,4-e]pyrimidin-7-yl)methyl]-4-(butylsulfanylmethyl)pyrrolidin-3-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BIG 'Create component' 2008-07-10 RCSB
BIG 'Modify aromatic_flag' 2011-06-04 RCSB
BIG 'Modify descriptor' 2011-06-04 RCSB
BIG 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id BIG
_pdbx_chem_comp_synonyms.name "butylthio-DADMe-Immucillin A"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id BIG
_pdbe_chem_comp_drugbank_details.drugbank_id DB07463
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id BIG
_pdbe_chem_comp_synonyms.name 'butylthio-DADMe-Immucillin A'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BIG
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07463
_pdbe_chem_comp_drugbank_classification.parent Pyrrolopyrimidines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Pyrrolopyrimidines
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrrolopyrimidines. These are compounds containing a pyrrolopyrimidine moiety, which consists of a pyrrole ring fused to a pyrimidine. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.'
#
_pdbe_chem_comp_drugbank_targets.comp_id BIG
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07463
_pdbe_chem_comp_drugbank_targets.name "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase"
_pdbe_chem_comp_drugbank_targets.organism 'Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)'
_pdbe_chem_comp_drugbank_targets.uniprot_id Q9KPI8
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BIG C2 C 3.000 -0.593 1
BIG C5 C 5.598 -2.092 2
BIG C4 C 5.598 -0.593 3
BIG C8 C 7.893 -1.343 4
BIG "O3'" O 12.061 3.922 5
BIG "C3'" C 11.055 2.809 6
BIG "C4'" C 11.364 1.342 7
BIG "C5'" C 12.734 0.729 8
BIG "S5'" S 13.949 1.609 9
BIG C20 C 15.318 0.997 10
BIG C21 C 16.533 1.876 11
BIG C22 C 17.902 1.264 12
BIG C23 C 19.117 2.143 13
BIG "C1'" C 10.064 0.594 14
BIG "N1'" N 8.951 1.600 15
BIG "C2'" C 9.564 2.969 16
BIG C10 C 7.483 1.290 17
BIG N7 N 7.018 -2.550 18
BIG C6 C 4.299 -2.842 19
BIG N6 N 4.299 -4.343 20
BIG N3 N 4.299 0.158 21
BIG C9 C 7.018 -0.136 22
BIG N1 N 3.000 -2.092 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BIG C2 N3 DOUBLE NONE 1
BIG C2 N1 SINGLE NONE 2
BIG C5 C4 DOUBLE NONE 3
BIG C5 N7 SINGLE NONE 4
BIG C5 C6 SINGLE NONE 5
BIG C4 N3 SINGLE NONE 6
BIG C4 C9 SINGLE NONE 7
BIG C8 N7 SINGLE NONE 8
BIG C8 C9 DOUBLE NONE 9
BIG "C3'" "O3'" SINGLE BEGINDASH 10
BIG "C3'" "C4'" SINGLE NONE 11
BIG "C3'" "C2'" SINGLE NONE 12
BIG "C4'" "C5'" SINGLE BEGINWEDGE 13
BIG "C4'" "C1'" SINGLE NONE 14
BIG "C5'" "S5'" SINGLE NONE 15
BIG "S5'" C20 SINGLE NONE 16
BIG C20 C21 SINGLE NONE 17
BIG C21 C22 SINGLE NONE 18
BIG C22 C23 SINGLE NONE 19
BIG "C1'" "N1'" SINGLE NONE 20
BIG "N1'" "C2'" SINGLE NONE 21
BIG "N1'" C10 SINGLE NONE 22
BIG C10 C9 SINGLE NONE 23
BIG C6 N6 SINGLE NONE 24
BIG C6 N1 DOUBLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BIG MurckoScaffold S1 scaffold 'c1ncc2[nH]cc(CN3CCCC3)c2n1' InChI=1S/C11H14N4/c1-2-4-15(3-1)7-9-5-13-10-6-12-8-14-11(9)10/h5-6,8,13H,1-4,7H2 LSNHIITUIUUQQV-UHFFFAOYSA-N
BIG pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
BIG pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BIG C2 S1 1
BIG C5 S1 1
BIG C4 S1 1
BIG C8 S1 1
BIG "C3'" S1 1
BIG "C4'" S1 1
BIG "C1'" S1 1
BIG "N1'" S1 1
BIG "C2'" S1 1
BIG C10 S1 1
BIG N7 S1 1
BIG C6 S1 1
BIG N3 S1 1
BIG C9 S1 1
BIG N1 S1 1
BIG C5 F1 1
BIG C4 F1 1
BIG N3 F1 1
BIG C2 F1 1
BIG N1 F1 1
BIG C6 F1 1
BIG C5 F2 1
BIG C4 F2 1
BIG C9 F2 1
BIG C8 F2 1
BIG N7 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BIG
_pdbe_chem_comp_rdkit_properties.exactmw 335.178
_pdbe_chem_comp_rdkit_properties.amw 335.477
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 175.807
_pdbe_chem_comp_rdkit_properties.tpsa 91.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.002
_pdbe_chem_comp_rdkit_properties.CrippenMR 92.012
_pdbe_chem_comp_rdkit_properties.chi0v 11.869
_pdbe_chem_comp_rdkit_properties.chi1v 6.665
_pdbe_chem_comp_rdkit_properties.chi2v 2.986
_pdbe_chem_comp_rdkit_properties.chi3v 2.986
_pdbe_chem_comp_rdkit_properties.chi4v 1.960
_pdbe_chem_comp_rdkit_properties.chi0n 36.053
_pdbe_chem_comp_rdkit_properties.chi1n 18.098
_pdbe_chem_comp_rdkit_properties.chi2n 2.475
_pdbe_chem_comp_rdkit_properties.chi3n 2.475
_pdbe_chem_comp_rdkit_properties.chi4n 1.567
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 3.917
_pdbe_chem_comp_rdkit_properties.kappa2 7.506
_pdbe_chem_comp_rdkit_properties.kappa3 3.786
_pdbe_chem_comp_rdkit_properties.Phi 1.278
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BIG UniChem ChEMBL CHEMBL1231347
BIG UniChem DrugBank DB07463
BIG UniChem PDBe BIG
BIG UniChem ZINC ZINC000013648011
BIG UniChem 'PubChem TPHARMA' 16488253
BIG UniChem PubChem 11393519
BIG UniChem Nikkaji J2.654.506D
BIG UniChem BindingDb 36436
BIG UniChem BRENDA 10252
BIG UniChem BRENDA 165982
BIG UniChem BRENDA 232328
BIG UniChem BRENDA 252851
BIG UniChem 'Probes And Drugs' PD005162
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BIG C2 -5.539 2.563 0.107 ETKDGv3 1
BIG C5 -5.594 -0.067 0.916 ETKDGv3 2
BIG C4 -4.769 0.340 -0.018 ETKDGv3 3
BIG C8 -4.303 -1.813 0.357 ETKDGv3 4
BIG "O3'" 0.503 2.252 0.158 ETKDGv3 5
BIG "C3'" 0.169 0.889 0.179 ETKDGv3 6
BIG "C4'" 0.764 0.162 -1.025 ETKDGv3 7
BIG "C5'" 2.100 -0.531 -0.708 ETKDGv3 8
BIG "S5'" 3.396 0.701 -0.330 ETKDGv3 9
BIG C20 4.698 -0.540 -0.022 ETKDGv3 10
BIG C21 6.006 0.162 0.340 ETKDGv3 11
BIG C22 7.121 -0.855 0.605 ETKDGv3 12
BIG C23 8.429 -0.157 0.967 ETKDGv3 13
BIG "C1'" -0.321 -0.838 -1.456 ETKDGv3 14
BIG "N1'" -1.494 -0.634 -0.592 ETKDGv3 15
BIG "C2'" -1.326 0.689 0.019 ETKDGv3 16
BIG C10 -2.759 -0.755 -1.343 ETKDGv3 17
BIG N7 -5.381 -1.438 1.221 ETKDGv3 18
BIG C6 -6.508 0.897 1.545 ETKDGv3 19
BIG N6 -7.423 0.504 2.568 ETKDGv3 20
BIG N3 -4.722 1.705 -0.447 ETKDGv3 21
BIG C9 -3.926 -0.783 -0.403 ETKDGv3 22
BIG N1 -6.462 2.139 1.140 ETKDGv3 23
BIG H2 -5.520 3.599 -0.204 ETKDGv3 24
BIG H8 -3.838 -2.791 0.358 ETKDGv3 25
BIG "HO3'" 0.227 2.623 1.037 ETKDGv3 26
BIG "H3'" 0.504 0.416 1.133 ETKDGv3 27
BIG "H4'" 0.923 0.886 -1.857 ETKDGv3 28
BIG "H5'" 2.421 -1.120 -1.594 ETKDGv3 29
BIG "H5'A" 1.978 -1.225 0.152 ETKDGv3 30
BIG H20 4.843 -1.153 -0.938 ETKDGv3 31
BIG H20A 4.384 -1.200 0.815 ETKDGv3 32
BIG H21 6.306 0.830 -0.498 ETKDGv3 33
BIG H21A 5.847 0.783 1.249 ETKDGv3 34
BIG H22 7.285 -1.477 -0.302 ETKDGv3 35
BIG H22A 6.827 -1.524 1.443 ETKDGv3 36
BIG H23 8.759 0.500 0.134 ETKDGv3 37
BIG H23A 8.299 0.453 1.887 ETKDGv3 38
BIG H23B 9.217 -0.917 1.153 ETKDGv3 39
BIG "H1'" -0.559 -0.672 -2.532 ETKDGv3 40
BIG "H1'A" 0.019 -1.891 -1.344 ETKDGv3 41
BIG "H2'" -1.831 0.721 1.009 ETKDGv3 42
BIG "H2'A" -1.742 1.493 -0.632 ETKDGv3 43
BIG H10 -2.761 -1.707 -1.919 ETKDGv3 44
BIG H10A -2.878 0.077 -2.072 ETKDGv3 45
BIG HN7 -5.838 -2.018 1.958 ETKDGv3 46
BIG HN6 -8.061 1.207 3.002 ETKDGv3 47
BIG HN6A -7.471 -0.486 2.893 ETKDGv3 48
#