data_BIK
#
_chem_comp.id BIK
_chem_comp.name "3,7-DIHYDROXY-2-NAPHTHOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H8 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "3,7-DIHYDROXYNAPHTHALENE-2-CARBOXYLIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-08-11
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 204.179
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BIK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1U5A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BIK O6 O6 O 0 1 N N N N N N 20.804 15.905 7.608 -4.390 1.289 0.010 O6 BIK 1
BIK C6 C6 C 0 1 Y N N N N N 21.856 16.238 6.867 -3.252 0.545 0.012 C6 BIK 2
BIK C7 C7 C 0 1 Y N N N N N 22.987 15.415 6.854 -3.341 -0.851 0.015 C7 BIK 3
BIK C8 C8 C 0 1 Y N N N N N 24.132 15.711 6.099 -2.222 -1.624 0.016 C8 BIK 4
BIK C8A C8A C 0 1 Y N N N N N 24.199 16.860 5.308 -0.953 -1.016 0.014 C8A BIK 5
BIK C4A C4A C 0 1 Y N N N N N 23.092 17.713 5.294 -0.861 0.400 0.010 C4A BIK 6
BIK C5 C5 C 0 1 Y N N N N N 21.937 17.404 6.065 -2.038 1.169 0.009 C5 BIK 7
BIK C4 C4 C 0 1 Y N N N N N 23.186 18.873 4.491 0.401 1.012 0.007 C4 BIK 8
BIK C1 C1 C 0 1 Y N N N N N 25.369 17.152 4.572 0.218 -1.791 0.014 C1 BIK 9
BIK C2 C2 C 0 1 Y N N N N N 25.465 18.301 3.765 1.439 -1.183 0.006 C2 BIK 10
BIK O2 O2 O 0 1 N N N N N N 26.531 18.510 3.066 2.566 -1.939 0.006 O2 BIK 11
BIK C3 C3 C 0 1 Y N N N N N 24.346 19.161 3.718 1.542 0.224 0.008 C3 BIK 12
BIK C31 C31 C 0 1 N N N N N N 24.394 20.413 2.858 2.872 0.861 0.005 C31 BIK 13
BIK O32 O32 O 0 1 N N N N N N 23.409 21.207 2.791 3.874 0.175 0.006 O32 BIK 14
BIK O31 O31 O 0 1 N N N N N N 25.428 20.630 2.206 2.975 2.205 0.002 O31 BIK 15
BIK HO6 HO6 H 0 1 N N N N N N 20.035 16.463 7.616 -4.624 1.439 -0.916 HO6 BIK 16
BIK H7 H7 H 0 1 N N N N N N 22.975 14.495 7.463 -4.313 -1.323 0.018 H7 BIK 17
BIK H8 H8 H 0 1 N N N N N N 24.996 15.026 6.127 -2.307 -2.700 0.019 H8 BIK 18
BIK H5 H5 H 0 1 N N N N N N 21.075 18.091 6.040 -1.983 2.247 0.007 H5 BIK 19
BIK H4 H4 H 0 1 N N N N N N 22.332 19.571 4.467 0.483 2.089 0.005 H4 BIK 20
BIK H1 H1 H 0 1 N N N N N N 26.230 16.465 4.628 0.152 -2.869 0.017 H1 BIK 21
BIK HO2 HO2 H 0 1 N N N N N N 26.595 19.285 2.521 2.795 -2.101 -0.919 HO2 BIK 22
BIK H32 H32 H 0 1 N N N N N N 23.439 21.989 2.253 ? ? ? H32 BIK 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BIK O6 C6 SING N N 1
BIK O6 HO6 SING N N 2
BIK C6 C7 DOUB Y N 3
BIK C6 C5 SING Y N 4
BIK C7 C8 SING Y N 5
BIK C7 H7 SING N N 6
BIK C8 C8A DOUB Y N 7
BIK C8 H8 SING N N 8
BIK C8A C4A SING Y N 9
BIK C8A C1 SING Y N 10
BIK C4A C5 DOUB Y N 11
BIK C4A C4 SING Y N 12
BIK C5 H5 SING N N 13
BIK C4 C3 DOUB Y N 14
BIK C4 H4 SING N N 15
BIK C1 C2 DOUB Y N 16
BIK C1 H1 SING N N 17
BIK C2 O2 SING N N 18
BIK C2 C3 SING Y N 19
BIK O2 HO2 SING N N 20
BIK C3 C31 SING N N 21
BIK C31 O32 SING N N 22
BIK C31 O31 DOUB N N 23
BIK O32 H32 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BIK SMILES ACDLabs 10.04 O=C(O)c2cc1c(ccc(O)c1)cc2O
BIK SMILES_CANONICAL CACTVS 3.341 OC(=O)c1cc2cc(O)ccc2cc1O
BIK SMILES CACTVS 3.341 OC(=O)c1cc2cc(O)ccc2cc1O
BIK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(cc2c1cc(c(c2)C(=O)O)O)O
BIK SMILES "OpenEye OEToolkits" 1.5.0 c1cc(cc2c1cc(c(c2)C(=O)O)O)O
BIK InChI InChI 1.03 InChI=1S/C11H8O4/c12-8-2-1-6-5-10(13)9(11(14)15)4-7(6)3-8/h1-5,12-13H,(H,14,15)
BIK InChIKey InChI 1.03 QMWOUSYSNFCKAZ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BIK "SYSTEMATIC NAME" ACDLabs 10.04 "3,7-dihydroxynaphthalene-2-carboxylic acid"
BIK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3,7-dihydroxynaphthalene-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BIK 'Create component' 2004-08-11 RCSB
BIK 'Modify descriptor' 2011-06-04 RCSB
BIK 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id BIK
_pdbx_chem_comp_synonyms.name "3,7-DIHYDROXYNAPHTHALENE-2-CARBOXYLIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id BIK
_pdbe_chem_comp_drugbank_details.drugbank_id DB04641
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '3,7-DIHYDROXYNAPHTHALENE-2-CARBOXYLIC ACID'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id BIK
_pdbe_chem_comp_synonyms.name '3,7-DIHYDROXYNAPHTHALENE-2-CARBOXYLIC ACID'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BIK
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04641
_pdbe_chem_comp_drugbank_classification.parent 'Naphthalenecarboxylic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Naphthalenes
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as naphthalenecarboxylic acids. These are compounds containing a naphthalene moiety, which bears a carboxylic acid group one or more positions. Naphthalene is a bicyclic compound that is made up of two fused benzene ring.'
#
_pdbe_chem_comp_drugbank_targets.comp_id BIK
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04641
_pdbe_chem_comp_drugbank_targets.name 'L-lactate dehydrogenase'
_pdbe_chem_comp_drugbank_targets.organism 'Plasmodium falciparum (isolate CDC / Honduras)'
_pdbe_chem_comp_drugbank_targets.uniprot_id Q27743
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BIK O6 O 12.192 -1.019 1
BIK C6 C 10.896 -0.264 2
BIK C7 C 10.896 1.299 3
BIK C8 C 9.537 2.070 4
BIK C8A C 8.196 1.268 5
BIK C4A C 8.196 -0.233 6
BIK C5 C 9.537 -1.034 7
BIK C4 C 6.897 -0.983 8
BIK C1 C 6.897 2.018 9
BIK C2 C 5.598 1.268 10
BIK O2 O 4.299 2.018 11
BIK C3 C 5.598 -0.233 12
BIK C31 C 4.299 -0.983 13
BIK O32 O 4.299 -2.482 14
BIK O31 O 3.000 -0.233 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BIK O6 C6 SINGLE NONE 1
BIK C6 C7 DOUBLE NONE 2
BIK C6 C5 SINGLE NONE 3
BIK C7 C8 SINGLE NONE 4
BIK C8 C8A DOUBLE NONE 5
BIK C8A C4A SINGLE NONE 6
BIK C8A C1 SINGLE NONE 7
BIK C4A C5 DOUBLE NONE 8
BIK C4A C4 SINGLE NONE 9
BIK C4 C3 DOUBLE NONE 10
BIK C1 C2 DOUBLE NONE 11
BIK C2 O2 SINGLE NONE 12
BIK C2 C3 SINGLE NONE 13
BIK C3 C31 SINGLE NONE 14
BIK C31 O32 SINGLE NONE 15
BIK C31 O31 DOUBLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BIK MurckoScaffold S1 scaffold c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
BIK napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
BIK phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BIK C6 S1 1
BIK C7 S1 1
BIK C8 S1 1
BIK C8A S1 1
BIK C4A S1 1
BIK C5 S1 1
BIK C4 S1 1
BIK C1 S1 1
BIK C2 S1 1
BIK C3 S1 1
BIK C6 F1 1
BIK C7 F1 1
BIK C8 F1 1
BIK C8A F1 1
BIK C4A F1 1
BIK C5 F1 1
BIK C4 F1 1
BIK C3 F1 1
BIK C2 F1 1
BIK C1 F1 1
BIK C6 F2 1
BIK C7 F2 1
BIK C8 F2 1
BIK C8A F2 1
BIK C4A F2 1
BIK C5 F2 1
BIK C8A F2 2
BIK C4A F2 2
BIK C4 F2 2
BIK C3 F2 2
BIK C2 F2 2
BIK C1 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id BIK
_pdbe_chem_comp_rdkit_properties.exactmw 204.042
_pdbe_chem_comp_rdkit_properties.amw 204.181
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 96.522
_pdbe_chem_comp_rdkit_properties.tpsa 77.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.541
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.545
_pdbe_chem_comp_rdkit_properties.chi0v 7.133
_pdbe_chem_comp_rdkit_properties.chi1v 3.816
_pdbe_chem_comp_rdkit_properties.chi2v 1.709
_pdbe_chem_comp_rdkit_properties.chi3v 1.709
_pdbe_chem_comp_rdkit_properties.chi4v 1.078
_pdbe_chem_comp_rdkit_properties.chi0n 15.133
_pdbe_chem_comp_rdkit_properties.chi1n 7.541
_pdbe_chem_comp_rdkit_properties.chi2n 1.709
_pdbe_chem_comp_rdkit_properties.chi3n 1.709
_pdbe_chem_comp_rdkit_properties.chi4n 1.078
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.230
_pdbe_chem_comp_rdkit_properties.kappa1 3.733
_pdbe_chem_comp_rdkit_properties.kappa2 3.165
_pdbe_chem_comp_rdkit_properties.kappa3 1.568
_pdbe_chem_comp_rdkit_properties.Phi 0.788
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BIK UniChem ChEMBL CHEMBL1231350
BIK UniChem DrugBank DB04641
BIK UniChem PDBe BIK
BIK UniChem ZINC ZINC000000156898
BIK UniChem eMolecules 493509
BIK UniChem SureChEMBL SCHEMBL124773
BIK UniChem 'PubChem TPHARMA' 15188893
BIK UniChem 'EPA CompTox Dashboard' DTXSID30352988
BIK UniChem BRENDA 27732
BIK UniChem BRENDA 42636
BIK UniChem BRENDA 60529
BIK UniChem ChemicalBook CB8192970
BIK UniChem 'Probes And Drugs' PD005940
BIK UniChem BindingDb 50379183
BIK UniChem PubChem 736299
BIK UniChem Mcule MCULE-9133006477
BIK UniChem Nikkaji J441.050E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BIK O6 -4.076 -0.934 -1.538 ETKDGv3 1
BIK C6 -2.999 -0.495 -0.770 ETKDGv3 2
BIK C7 -3.197 0.074 0.431 ETKDGv3 3
BIK C8 -2.045 0.536 1.233 ETKDGv3 4
BIK C8A -0.797 0.384 0.763 ETKDGv3 5
BIK C4A -0.576 -0.243 -0.559 ETKDGv3 6
BIK C5 -1.623 -0.663 -1.287 ETKDGv3 7
BIK C4 0.811 -0.416 -1.028 ETKDGv3 8
BIK C1 0.376 0.854 1.517 ETKDGv3 9
BIK C2 1.616 0.710 1.024 ETKDGv3 10
BIK O2 2.666 1.280 1.745 ETKDGv3 11
BIK C3 1.853 -0.002 -0.279 ETKDGv3 12
BIK C31 3.225 -0.309 -0.740 ETKDGv3 13
BIK O32 4.222 -0.628 0.178 ETKDGv3 14
BIK O31 3.491 -0.331 -1.973 ETKDGv3 15
BIK HO6 -5.033 -0.838 -1.220 ETKDGv3 16
BIK H7 -4.199 0.201 0.820 ETKDGv3 17
BIK H8 -2.222 1.001 2.196 ETKDGv3 18
BIK H5 -1.473 -1.130 -2.253 ETKDGv3 19
BIK H4 0.983 -0.932 -1.966 ETKDGv3 20
BIK H1 0.235 1.366 2.462 ETKDGv3 21
BIK HO2 3.602 1.371 1.375 ETKDGv3 22
BIK H32 5.160 -0.855 -0.131 ETKDGv3 23
#