data_BJ8
#
_chem_comp.id BJ8
_chem_comp.name "Double cubane cluster"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "Fe8 S9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-05
_chem_comp.pdbx_modified_date 2018-03-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 735.345
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BJ8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6ENO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BJ8 S1 S1 S 0 1 N N N N N N -24.061 -19.670 -13.534 -24.061 -19.670 -13.534 S1 BJ8 1
BJ8 S2 S2 S 0 1 N N N N N N -20.544 -19.775 -13.419 -20.544 -19.775 -13.419 S2 BJ8 2
BJ8 S3 S3 S 0 1 N N N N N N -22.543 -19.463 -10.356 -22.543 -19.463 -10.356 S3 BJ8 3
BJ8 S4 S4 S 0 1 N N N N N N -22.536 -22.453 -12.049 -22.536 -22.453 -12.049 S4 BJ8 4
BJ8 S5 S5 S 0 1 N N N N N N -15.716 -21.236 -9.269 -15.716 -21.236 -9.269 S5 BJ8 5
BJ8 S6 S6 S 0 1 N N N N N N -16.842 -22.360 -12.611 -16.842 -22.360 -12.611 S6 BJ8 6
BJ8 S7 S7 S 0 1 N N N N N N -16.971 -18.881 -11.816 -16.971 -18.881 -11.816 S7 BJ8 7
BJ8 S8 S8 S 0 1 N N N N N N -13.709 -20.306 -12.131 -13.709 -20.306 -12.131 S8 BJ8 8
BJ8 S9 S9 S 0 1 N N N N N N -19.409 -21.215 -9.999 -19.409 -21.215 -9.999 S9 BJ8 9
BJ8 FE1 FE1 FE 0 0 N N N N N N -21.133 -20.831 -11.415 -21.133 -20.831 -11.415 FE1 BJ8 10
BJ8 FE2 FE2 FE 0 0 N N N N N N -23.826 -20.759 -11.578 -23.826 -20.759 -11.578 FE2 BJ8 11
BJ8 FE3 FE3 FE 0 0 N N N N N N -22.413 -21.049 -13.810 -22.413 -21.049 -13.810 FE3 BJ8 12
BJ8 FE4 FE4 FE 0 0 N N N N N N -22.404 -18.681 -12.477 -22.404 -18.681 -12.477 FE4 BJ8 13
BJ8 FE5 FE5 FE 0 0 N N N N N N -15.857 -20.330 -13.058 -15.857 -20.330 -13.058 FE5 BJ8 14
BJ8 FE6 FE6 FE 0 0 N N N N N N -15.116 -19.457 -10.578 -15.116 -19.457 -10.578 FE6 BJ8 15
BJ8 FE7 FE7 FE 0 0 N N N N N N -14.949 -22.064 -11.253 -14.949 -22.064 -11.253 FE7 BJ8 16
BJ8 FE8 FE8 FE 0 0 N N N N N N -17.423 -20.937 -10.931 -17.423 -20.937 -10.931 FE8 BJ8 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BJ8 S1 FE2 SING N N 1
BJ8 S1 FE3 SING N N 2
BJ8 S1 FE4 SING N N 3
BJ8 S2 FE1 SING N N 4
BJ8 S2 FE3 SING N N 5
BJ8 S2 FE4 SING N N 6
BJ8 S3 FE1 SING N N 7
BJ8 S3 FE2 SING N N 8
BJ8 S3 FE4 SING N N 9
BJ8 S4 FE1 SING N N 10
BJ8 S4 FE2 SING N N 11
BJ8 S4 FE3 SING N N 12
BJ8 S5 FE6 SING N N 13
BJ8 S5 FE7 SING N N 14
BJ8 S6 FE5 SING N N 15
BJ8 S6 FE7 SING N N 16
BJ8 S6 FE8 SING N N 17
BJ8 S7 FE5 SING N N 18
BJ8 S7 FE6 SING N N 19
BJ8 S7 FE8 SING N N 20
BJ8 S8 FE5 SING N N 21
BJ8 S8 FE6 SING N N 22
BJ8 S8 FE7 SING N N 23
BJ8 S9 FE1 SING N N 24
BJ8 S9 FE8 SING N N 25
BJ8 S5 FE8 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BJ8 InChI InChI 1.03 InChI=1S/8Fe.9S
BJ8 InChIKey InChI 1.03 CSVVAMDLRWBOEA-UHFFFAOYSA-N
BJ8 SMILES_CANONICAL CACTVS 3.385 S1[Fe]S[Fe]1.S2[Fe]S[Fe]2.S3[Fe]S[Fe]3S[Fe]4S[Fe]S4
BJ8 SMILES CACTVS 3.385 S1[Fe]S[Fe]1.S2[Fe]S[Fe]2.S3[Fe]S[Fe]3S[Fe]4S[Fe]S4
BJ8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 S([Fe]12[S]3[Fe]4[S]1[Fe]5[S]4[Fe]3[S]25)[Fe]67[S]8[Fe]9[S]6[Fe]1[S]9[Fe]8[S]71
BJ8 SMILES "OpenEye OEToolkits" 2.0.6 S([Fe]12[S]3[Fe]4[S]1[Fe]5[S]4[Fe]3[S]25)[Fe]67[S]8[Fe]9[S]6[Fe]1[S]9[Fe]8[S]71
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BJ8 'Create component' 2017-10-05 EBI
BJ8 'Initial release' 2018-03-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BJ8 S1 S 3.384 -0.491 1
BJ8 S2 S 2.257 -0.531 2
BJ8 S3 S 2.438 1.598 3
BJ8 S4 S 1.266 -0.338 4
BJ8 S5 S -2.100 0.922 5
BJ8 S6 S -2.737 0.141 6
BJ8 S7 S -0.959 -1.030 7
BJ8 S8 S -3.239 -0.862 8
BJ8 S9 S -0.619 1.175 9
BJ8 FE1 Fe 1.278 0.600 10
BJ8 FE2 Fe 2.415 0.674 11
BJ8 FE3 Fe 2.232 -1.480 12
BJ8 FE4 Fe 3.408 0.455 13
BJ8 FE5 Fe -2.420 -1.335 14
BJ8 FE6 Fe -1.757 -0.571 15
BJ8 FE7 Fe -3.561 0.614 16
BJ8 FE8 Fe -1.286 0.458 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BJ8 S1 FE2 SINGLE NONE 1
BJ8 S1 FE3 SINGLE NONE 2
BJ8 S1 FE4 SINGLE NONE 3
BJ8 S2 FE1 SINGLE NONE 4
BJ8 S2 FE3 SINGLE BEGINDASH 5
BJ8 S2 FE4 SINGLE NONE 6
BJ8 S3 FE1 SINGLE NONE 7
BJ8 S3 FE2 SINGLE BEGINDASH 8
BJ8 S3 FE4 SINGLE NONE 9
BJ8 S4 FE1 SINGLE NONE 10
BJ8 S4 FE2 SINGLE BEGINDASH 11
BJ8 S4 FE3 SINGLE NONE 12
BJ8 S5 FE6 SINGLE BEGINWEDGE 13
BJ8 S5 FE7 SINGLE NONE 14
BJ8 S6 FE5 SINGLE BEGINWEDGE 15
BJ8 S6 FE7 SINGLE NONE 16
BJ8 S6 FE8 SINGLE NONE 17
BJ8 S7 FE5 SINGLE BEGINDASH 18
BJ8 S7 FE6 SINGLE NONE 19
BJ8 S7 FE8 SINGLE NONE 20
BJ8 S8 FE5 SINGLE NONE 21
BJ8 S8 FE6 SINGLE NONE 22
BJ8 S8 FE7 SINGLE NONE 23
BJ8 FE1 S9 SINGLE BEGINWEDGE 24
BJ8 FE8 S9 SINGLE BEGINDASH 25
BJ8 S5 FE8 SINGLE NONE 26
#
_pdbe_chem_comp_substructure.comp_id BJ8
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles
'S([Fe@]12[S@@]3[Fe]4[S]5[Fe]3[S@@]1[Fe]5[S@@]42)[Fe@]12[S@@]3[Fe]4[S]5[Fe]3[S@@]1[Fe]5[S@@]42'
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/8Fe.9S
_pdbe_chem_comp_substructure.substructure_inchikeys CSVVAMDLRWBOEA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BJ8 S1 S1 1
BJ8 S2 S1 1
BJ8 S3 S1 1
BJ8 S4 S1 1
BJ8 S5 S1 1
BJ8 S6 S1 1
BJ8 S7 S1 1
BJ8 S8 S1 1
BJ8 S9 S1 1
BJ8 FE1 S1 1
BJ8 FE2 S1 1
BJ8 FE3 S1 1
BJ8 FE4 S1 1
BJ8 FE5 S1 1
BJ8 FE6 S1 1
BJ8 FE7 S1 1
BJ8 FE8 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BJ8
_pdbe_chem_comp_rdkit_properties.exactmw 735.228
_pdbe_chem_comp_rdkit_properties.amw 735.363
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 12
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 12
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 12
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 12
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 12
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 12
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 132.607
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.814
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.319
_pdbe_chem_comp_rdkit_properties.chi0v 22.685
_pdbe_chem_comp_rdkit_properties.chi1v 46.419
_pdbe_chem_comp_rdkit_properties.chi2v 363.375
_pdbe_chem_comp_rdkit_properties.chi3v 363.375
_pdbe_chem_comp_rdkit_properties.chi4v 838.466
_pdbe_chem_comp_rdkit_properties.chi0n 6.503
_pdbe_chem_comp_rdkit_properties.chi1n 3.753
_pdbe_chem_comp_rdkit_properties.chi2n 2.375
_pdbe_chem_comp_rdkit_properties.chi3n 2.375
_pdbe_chem_comp_rdkit_properties.chi4n 1.762
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 7.306
_pdbe_chem_comp_rdkit_properties.kappa1 11.901
_pdbe_chem_comp_rdkit_properties.kappa2 2.987
_pdbe_chem_comp_rdkit_properties.kappa3 0.719
_pdbe_chem_comp_rdkit_properties.Phi 2.091
#
_pdbe_chem_comp_external_mappings.comp_id BJ8
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id BJ8
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BJ8 S1 1.752 0.372 1.387 ETKDGv3 1
BJ8 S2 2.764 1.100 -2.303 ETKDGv3 2
BJ8 S3 2.426 -2.137 -2.059 ETKDGv3 3
BJ8 S4 1.734 -0.227 0.494 ETKDGv3 4
BJ8 S5 -2.037 1.017 2.375 ETKDGv3 5
BJ8 S6 -3.582 -0.799 0.146 ETKDGv3 6
BJ8 S7 -1.348 -2.161 2.096 ETKDGv3 7
BJ8 S8 -0.857 2.334 -1.143 ETKDGv3 8
BJ8 S9 -0.698 -1.766 -1.103 ETKDGv3 9
BJ8 FE1 1.046 -0.321 -1.707 ETKDGv3 10
BJ8 FE2 3.946 1.403 0.127 ETKDGv3 11
BJ8 FE3 2.850 -0.087 1.634 ETKDGv3 12
BJ8 FE4 4.396 -0.803 -0.661 ETKDGv3 13
BJ8 FE5 -4.692 -0.412 0.353 ETKDGv3 14
BJ8 FE6 -2.801 1.195 1.565 ETKDGv3 15
BJ8 FE7 -3.526 1.656 -1.060 ETKDGv3 16
BJ8 FE8 -1.373 -0.364 0.649 ETKDGv3 17
#