data_BJK
#
_chem_comp.id BJK
_chem_comp.name (4-methoxy-3-oxidanyl-phenyl)methylazanium
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H12 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2017-10-06
_chem_comp.pdbx_modified_date 2018-02-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 154.186
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BJK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5N1M
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BJK C4 C1 C 0 1 Y N N N N N -12.742 25.552 -26.334 1.470 -0.155 0.332 C4 BJK 1
BJK C5 C2 C 0 1 Y N N N N N -13.782 26.086 -25.586 0.746 -1.332 0.288 C5 BJK 2
BJK C6 C3 C 0 1 N N N N N N -11.646 26.432 -26.870 2.965 -0.198 0.515 C6 BJK 3
BJK C7 C4 C 0 1 N N N N N N -16.261 23.458 -23.448 -3.312 -1.300 -0.188 C7 BJK 4
BJK O O1 O 0 1 N N N N N N -13.598 22.009 -26.196 -1.184 2.299 -0.093 O BJK 5
BJK C2 C5 C 0 1 Y N N N N N -13.649 23.349 -25.964 -0.549 1.103 0.029 C2 BJK 6
BJK C1 C6 C 0 1 Y N N N N N -14.662 23.901 -25.171 -1.278 -0.082 -0.005 C1 BJK 7
BJK O1 O2 O 0 1 N N N N N N -15.445 22.987 -24.522 -2.629 -0.046 -0.161 O1 BJK 8
BJK C3 C7 C 0 1 Y N N N N N -12.697 24.179 -26.527 0.826 1.062 0.203 C3 BJK 9
BJK C C8 C 0 1 Y N N N N N -14.738 25.273 -25.005 -0.626 -1.298 0.119 C BJK 10
BJK N N1 N 1 1 N N N N N N -10.437 26.411 -26.006 3.618 -0.263 -0.799 N BJK 11
BJK H1 H1 H 0 1 N N N N N N -13.846 27.156 -25.455 1.253 -2.280 0.385 H1 BJK 12
BJK H3 H2 H 0 1 N N N N N N -11.369 26.081 -27.875 3.293 0.700 1.040 H3 BJK 13
BJK H2 H3 H 0 1 N N N N N N -12.019 27.465 -26.932 3.234 -1.078 1.099 H2 BJK 14
BJK H6 H4 H 0 1 N N N N N N -16.831 22.618 -23.024 -2.937 -1.901 -1.016 H6 BJK 15
BJK H4 H5 H 0 1 N N N N N N -15.622 23.898 -22.668 -3.140 -1.828 0.751 H4 BJK 16
BJK H5 H6 H 0 1 N N N N N N -16.958 24.221 -23.825 -4.381 -1.129 -0.317 H5 BJK 17
BJK H7 H7 H 0 1 N N N N N N -14.315 21.581 -25.743 -1.468 2.681 0.749 H7 BJK 18
BJK H8 H8 H 0 1 N N N N N N -11.906 23.752 -27.126 1.393 1.980 0.238 H8 BJK 19
BJK H9 H9 H 0 1 N N N N N N -15.539 25.706 -24.425 -1.189 -2.219 0.085 H9 BJK 20
BJK H10 H10 H 0 1 N N N N N N -9.736 27.007 -26.398 4.619 -0.292 -0.677 H10 BJK 21
BJK H11 H11 H 0 1 N N N N N N -10.676 26.735 -25.091 3.314 -1.094 -1.285 H11 BJK 22
BJK H12 H12 H 0 1 N N N N N N -10.085 25.477 -25.948 3.368 0.552 -1.339 H12 BJK 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BJK C6 C4 SING N N 1
BJK C6 N SING N N 2
BJK C3 C4 DOUB Y N 3
BJK C3 C2 SING Y N 4
BJK C4 C5 SING Y N 5
BJK O C2 SING N N 6
BJK C2 C1 DOUB Y N 7
BJK C5 C DOUB Y N 8
BJK C1 C SING Y N 9
BJK C1 O1 SING N N 10
BJK O1 C7 SING N N 11
BJK C5 H1 SING N N 12
BJK C6 H3 SING N N 13
BJK C6 H2 SING N N 14
BJK C7 H6 SING N N 15
BJK C7 H4 SING N N 16
BJK C7 H5 SING N N 17
BJK O H7 SING N N 18
BJK C3 H8 SING N N 19
BJK C H9 SING N N 20
BJK N H10 SING N N 21
BJK N H11 SING N N 22
BJK N H12 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BJK InChI InChI 1.03 InChI=1S/C8H11NO2/c1-11-8-3-2-6(5-9)4-7(8)10/h2-4,10H,5,9H2,1H3/p+1
BJK InChIKey InChI 1.03 HJIDMVZCXORAIG-UHFFFAOYSA-O
BJK SMILES_CANONICAL CACTVS 3.385 COc1ccc(C[NH3+])cc1O
BJK SMILES CACTVS 3.385 COc1ccc(C[NH3+])cc1O
BJK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 COc1ccc(cc1O)C[NH3+]
BJK SMILES "OpenEye OEToolkits" 2.0.6 COc1ccc(cc1O)C[NH3+]
#
_pdbx_chem_comp_identifier.comp_id BJK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier (4-methoxy-3-oxidanyl-phenyl)methylazanium
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BJK 'Create component' 2017-10-06 EBI
BJK 'Initial release' 2018-02-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BJK C4 C 6.404 1.097 1
BJK C5 C 7.702 0.347 2
BJK C6 C 6.404 2.597 3
BJK C7 C 7.702 -4.153 4
BJK O O 3.805 -1.903 5
BJK C2 C 5.104 -1.153 6
BJK C1 C 6.404 -1.903 7
BJK O1 O 6.404 -3.403 8
BJK C3 C 5.104 0.347 9
BJK C C 7.702 -1.153 10
BJK N N 7.702 3.347 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BJK C6 C4 SINGLE NONE 1
BJK C6 N SINGLE NONE 2
BJK C3 C4 DOUBLE NONE 3
BJK C3 C2 SINGLE NONE 4
BJK C4 C5 SINGLE NONE 5
BJK O C2 SINGLE NONE 6
BJK C2 C1 DOUBLE NONE 7
BJK C5 C DOUBLE NONE 8
BJK C1 C SINGLE NONE 9
BJK C1 O1 SINGLE NONE 10
BJK O1 C7 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BJK MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
BJK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BJK C4 S1 1
BJK C5 S1 1
BJK C2 S1 1
BJK C1 S1 1
BJK C3 S1 1
BJK C S1 1
BJK C4 F1 1
BJK C3 F1 1
BJK C2 F1 1
BJK C1 F1 1
BJK C F1 1
BJK C5 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BJK
_pdbe_chem_comp_rdkit_properties.exactmw 154.086
_pdbe_chem_comp_rdkit_properties.amw 154.189
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 82.529
_pdbe_chem_comp_rdkit_properties.tpsa 57.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.837
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.765
_pdbe_chem_comp_rdkit_properties.chi0v 5.264
_pdbe_chem_comp_rdkit_properties.chi1v 2.586
_pdbe_chem_comp_rdkit_properties.chi2v 0.960
_pdbe_chem_comp_rdkit_properties.chi3v 0.960
_pdbe_chem_comp_rdkit_properties.chi4v 0.505
_pdbe_chem_comp_rdkit_properties.chi0n 17.264
_pdbe_chem_comp_rdkit_properties.chi1n 8.336
_pdbe_chem_comp_rdkit_properties.chi2n 0.960
_pdbe_chem_comp_rdkit_properties.chi3n 0.960
_pdbe_chem_comp_rdkit_properties.chi4n 0.505
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.220
_pdbe_chem_comp_rdkit_properties.kappa1 1.589
_pdbe_chem_comp_rdkit_properties.kappa2 3.254
_pdbe_chem_comp_rdkit_properties.kappa3 1.621
_pdbe_chem_comp_rdkit_properties.Phi 0.470
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BJK UniChem PDBe BJK
BJK UniChem PubChem 153274104
BJK UniChem PubChem 6969855
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BJK C4 -1.228 -0.448 -0.349 ETKDGv3 1
BJK C5 -0.481 0.458 -1.250 ETKDGv3 2
BJK C6 -2.719 -0.600 -0.505 ETKDGv3 3
BJK C7 3.771 0.906 -0.645 ETKDGv3 4
BJK O 1.520 -1.587 1.848 ETKDGv3 5
BJK C2 0.883 -0.899 0.815 ETKDGv3 6
BJK C1 1.568 -0.084 -0.013 ETKDGv3 7
BJK O1 2.950 0.074 0.167 ETKDGv3 8
BJK C3 -0.575 -1.078 0.641 ETKDGv3 9
BJK C 0.836 0.629 -1.096 ETKDGv3 10
BJK N -3.427 0.399 0.295 ETKDGv3 11
BJK H1 -1.002 0.988 -2.039 ETKDGv3 12
BJK H3 -2.997 -0.482 -1.576 ETKDGv3 13
BJK H2 -3.037 -1.620 -0.196 ETKDGv3 14
BJK H6 3.432 1.962 -0.574 ETKDGv3 15
BJK H4 3.736 0.564 -1.700 ETKDGv3 16
BJK H5 4.818 0.844 -0.285 ETKDGv3 17
BJK H7 2.515 -1.510 2.023 ETKDGv3 18
BJK H8 -1.109 -1.726 1.326 ETKDGv3 19
BJK H9 1.358 1.296 -1.769 ETKDGv3 20
BJK H10 -4.457 0.276 0.162 ETKDGv3 21
BJK H11 -3.198 0.275 1.308 ETKDGv3 22
BJK H12 -3.158 1.362 -0.013 ETKDGv3 23
#