data_BK4 # _chem_comp.id BK4 _chem_comp.name 3-(6-methoxynaphthalen-2-yl)-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms RM-1-87 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-27 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 333.387 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BK4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3T3V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BK4 N1 N1 N 0 1 Y N N N N N 16.686 11.623 62.700 3.450 -2.844 -0.530 N1 BK4 1 BK4 C2 C2 C 0 1 Y N N N N N 17.885 12.117 62.369 4.584 -2.166 -0.553 C2 BK4 2 BK4 N3 N3 N 0 1 Y N N N N N 18.017 13.435 62.237 4.638 -0.866 -0.364 N3 BK4 3 BK4 C4 C4 C 0 1 Y N N N N N 16.971 14.270 62.446 3.527 -0.165 -0.137 C4 BK4 4 BK4 C5 C5 C 0 1 Y N N N N N 15.724 13.778 62.807 2.295 -0.845 -0.104 C5 BK4 5 BK4 C6 C6 C 0 1 Y N N N N N 15.597 12.392 62.925 2.290 -2.234 -0.312 C6 BK4 6 BK4 CAA CAA C 0 1 N N N N N N 6.855 14.748 64.684 -7.381 0.744 -0.524 CAA BK4 7 BK4 CAB CAB C 0 1 N N N N N N 17.885 17.865 62.701 3.949 3.261 -0.940 CAB BK4 8 BK4 CAC CAC C 0 1 N N N N N N 18.040 16.646 60.513 4.217 2.892 1.517 CAC BK4 9 BK4 NAD NAD N 0 1 N N N N N N 14.459 11.796 63.255 1.107 -2.948 -0.289 NAD BK4 10 BK4 CAF CAF C 0 1 Y N N N N N 9.948 13.540 66.159 -4.720 1.137 -0.728 CAF BK4 11 BK4 CAG CAG C 0 1 Y N N N N N 12.677 15.635 62.524 -0.653 -1.158 1.043 CAG BK4 12 BK4 CAH CAH C 0 1 Y N N N N N 11.290 13.547 65.839 -3.389 1.386 -0.863 CAH BK4 13 BK4 CAI CAI C 0 1 Y N N N N N 11.318 15.660 62.848 -1.983 -1.397 1.173 CAI BK4 14 BK4 CAJ CAJ C 0 1 Y N N N N N 9.492 14.973 64.282 -4.295 -0.779 0.661 CAJ BK4 15 BK4 CAK CAK C 0 1 Y N N N N N 13.113 14.208 64.413 -1.076 0.775 -0.352 CAK BK4 16 BK4 NAN NAN N 0 1 Y N N N N N 15.694 15.970 62.659 1.881 1.323 0.266 NAN BK4 17 BK4 OAO OAO O 0 1 N N N N N N 7.734 14.236 65.728 -6.510 -0.164 0.154 OAO BK4 18 BK4 CAP CAP C 0 1 Y N N N N N 9.044 14.253 65.379 -5.175 0.057 0.034 CAP BK4 19 BK4 CAQ CAQ C 0 1 Y N N N N N 13.581 14.903 63.296 -0.186 -0.072 0.283 CAQ BK4 20 BK4 CAS CAS C 0 1 Y N N N N N 14.931 14.912 62.947 1.271 0.166 0.159 CAS BK4 21 BK4 CAT CAT C 0 1 Y N N N N N 10.848 14.959 63.955 -2.914 -0.554 0.539 CAT BK4 22 BK4 CAU CAU C 0 1 Y N N N N N 11.754 14.235 64.737 -2.455 0.545 -0.231 CAU BK4 23 BK4 CAX CAX C 0 1 N N N N N N 17.982 16.492 62.038 4.257 2.223 0.141 CAX BK4 24 BK4 NAY NAY N 0 1 Y N N N N N 16.849 15.599 62.393 3.258 1.153 0.090 NAY BK4 25 BK4 H2 H2 H 0 1 N N N N N N 18.728 11.460 62.212 5.504 -2.701 -0.734 H2 BK4 26 BK4 HAA HAA H 0 1 N N N N N N 5.812 14.707 65.030 -7.216 1.754 -0.149 HAA BK4 27 BK4 HAAA HAAA H 0 0 N N N N N N 7.125 15.790 64.456 -7.174 0.715 -1.594 HAAA BK4 28 BK4 HAAB HAAB H 0 0 N N N N N N 6.966 14.134 63.778 -8.417 0.455 -0.346 HAAB BK4 29 BK4 HAB HAB H 0 1 N N N N N N 17.844 17.743 63.793 3.978 2.784 -1.920 HAB BK4 30 BK4 HABA HABA H 0 0 N N N N N N 18.767 18.465 62.432 2.958 3.680 -0.769 HABA BK4 31 BK4 HABB HABB H 0 0 N N N N N N 16.974 18.376 62.355 4.692 4.057 -0.901 HABB BK4 32 BK4 HAC HAC H 0 1 N N N N N N 18.110 15.652 60.046 3.225 3.312 1.687 HAC BK4 33 BK4 HACA HACA H 0 0 N N N N N N 17.130 17.153 60.161 4.436 2.153 2.287 HACA BK4 34 BK4 HACB HACB H 0 0 N N N N N N 18.922 17.243 60.238 4.960 3.689 1.555 HACB BK4 35 BK4 HNAD HNAD H 0 0 N N N N N N 14.598 10.806 63.287 1.125 -3.913 -0.190 HNAD BK4 36 BK4 HNAA HNAA H 0 0 N N N N N N 14.162 12.120 64.153 0.259 -2.485 -0.373 HNAA BK4 37 BK4 HAF HAF H 0 1 N N N N N N 9.600 12.981 67.015 -5.434 1.785 -1.214 HAF BK4 38 BK4 HAG HAG H 0 1 N N N N N N 13.032 16.188 61.667 0.056 -1.809 1.533 HAG BK4 39 BK4 HAH HAH H 0 1 N N N N N N 11.988 13.006 66.461 -3.052 2.225 -1.452 HAH BK4 40 BK4 HAI HAI H 0 1 N N N N N N 10.630 16.225 62.237 -2.326 -2.236 1.760 HAI BK4 41 BK4 HAJ HAJ H 0 1 N N N N N N 8.795 15.541 63.684 -4.659 -1.610 1.247 HAJ BK4 42 BK4 HAK HAK H 0 1 N N N N N N 13.803 13.649 65.028 -0.712 1.609 -0.934 HAK BK4 43 BK4 HAX HAX H 0 1 N N N N N N 18.905 16.026 62.414 5.249 1.804 -0.029 HAX BK4 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BK4 N1 C6 DOUB Y N 1 BK4 C2 N1 SING Y N 2 BK4 C2 H2 SING N N 3 BK4 N3 C2 DOUB Y N 4 BK4 N3 C4 SING Y N 5 BK4 C4 C5 DOUB Y N 6 BK4 C5 C6 SING Y N 7 BK4 C5 CAS SING Y N 8 BK4 C6 NAD SING N N 9 BK4 CAA OAO SING N N 10 BK4 CAA HAA SING N N 11 BK4 CAA HAAA SING N N 12 BK4 CAA HAAB SING N N 13 BK4 CAB HAB SING N N 14 BK4 CAB HABA SING N N 15 BK4 CAB HABB SING N N 16 BK4 CAC CAX SING N N 17 BK4 CAC HAC SING N N 18 BK4 CAC HACA SING N N 19 BK4 CAC HACB SING N N 20 BK4 NAD HNAD SING N N 21 BK4 NAD HNAA SING N N 22 BK4 CAF HAF SING N N 23 BK4 CAG CAI DOUB Y N 24 BK4 CAG CAQ SING Y N 25 BK4 CAG HAG SING N N 26 BK4 CAH CAF DOUB Y N 27 BK4 CAH HAH SING N N 28 BK4 CAI CAT SING Y N 29 BK4 CAI HAI SING N N 30 BK4 CAJ CAP DOUB Y N 31 BK4 CAJ HAJ SING N N 32 BK4 CAK CAU SING Y N 33 BK4 CAK HAK SING N N 34 BK4 NAN CAS DOUB Y N 35 BK4 CAP CAF SING Y N 36 BK4 CAP OAO SING N N 37 BK4 CAQ CAK DOUB Y N 38 BK4 CAS CAQ SING N N 39 BK4 CAT CAJ SING Y N 40 BK4 CAT CAU DOUB Y N 41 BK4 CAU CAH SING Y N 42 BK4 CAX CAB SING N N 43 BK4 CAX NAY SING N N 44 BK4 CAX HAX SING N N 45 BK4 NAY C4 SING Y N 46 BK4 NAY NAN SING Y N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BK4 SMILES ACDLabs 12.01 n1c(c2c(nc1)n(nc2c4cc3ccc(OC)cc3cc4)C(C)C)N BK4 InChI InChI 1.03 InChI=1S/C19H19N5O/c1-11(2)24-19-16(18(20)21-10-22-19)17(23-24)14-5-4-13-9-15(25-3)7-6-12(13)8-14/h4-11H,1-3H3,(H2,20,21,22) BK4 InChIKey InChI 1.03 YTSDNPLOCDVGNB-UHFFFAOYSA-N BK4 SMILES_CANONICAL CACTVS 3.370 COc1ccc2cc(ccc2c1)c3nn(C(C)C)c4ncnc(N)c34 BK4 SMILES CACTVS 3.370 COc1ccc2cc(ccc2c1)c3nn(C(C)C)c4ncnc(N)c34 BK4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 CC(C)n1c2c(c(n1)c3ccc4cc(ccc4c3)OC)c(ncn2)N BK4 SMILES "OpenEye OEToolkits" 1.7.2 CC(C)n1c2c(c(n1)c3ccc4cc(ccc4c3)OC)c(ncn2)N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BK4 "SYSTEMATIC NAME" ACDLabs 12.01 3-(6-methoxynaphthalen-2-yl)-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine BK4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 3-(6-methoxynaphthalen-2-yl)-1-propan-2-yl-pyrazolo[3,4-d]pyrimidin-4-amine # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BK4 'Create component' 2011-07-27 RCSB BK4 'Modify synonyms' 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BK4 _pdbx_chem_comp_synonyms.name RM-1-87 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbe_chem_comp_synonyms.comp_id BK4 _pdbe_chem_comp_synonyms.name RM-1-87 _pdbe_chem_comp_synonyms.provenance wwPDB _pdbe_chem_comp_synonyms.type ? # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal BK4 N1 N 4.002 2.516 1 BK4 C2 C 3.000 1.399 2 BK4 N3 N 3.466 -0.027 3 BK4 C4 C 4.934 -0.336 4 BK4 C5 C 5.936 0.781 5 BK4 C6 C 5.470 2.206 6 BK4 CAA C 16.492 2.464 7 BK4 CAB C 3.588 -3.158 8 BK4 CAC C 5.965 -4.207 9 BK4 NAD N 6.471 3.323 10 BK4 CAF C 13.894 0.892 11 BK4 CAG C 8.596 2.423 12 BK4 CAH C 12.535 0.121 13 BK4 CAI C 9.895 3.173 14 BK4 CAJ C 12.535 3.225 15 BK4 CAK C 9.895 0.173 16 BK4 NAN N 7.143 -1.310 17 BK4 OAO O 15.191 3.209 18 BK4 CAP C 13.894 2.454 19 BK4 CAQ C 8.596 0.923 20 BK4 CAS C 7.297 0.173 21 BK4 CAT C 11.194 2.423 22 BK4 CAU C 11.194 0.923 23 BK4 CAX C 5.080 -2.996 24 BK4 NAY N 5.685 -1.624 25 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal BK4 N1 C6 DOUBLE NONE 1 BK4 C2 N1 SINGLE NONE 2 BK4 N3 C2 DOUBLE NONE 3 BK4 N3 C4 SINGLE NONE 4 BK4 C4 C5 DOUBLE NONE 5 BK4 C5 C6 SINGLE NONE 6 BK4 C5 CAS SINGLE NONE 7 BK4 C6 NAD SINGLE NONE 8 BK4 CAA OAO SINGLE NONE 9 BK4 CAC CAX SINGLE NONE 10 BK4 CAG CAI SINGLE NONE 11 BK4 CAG CAQ DOUBLE NONE 12 BK4 CAH CAF DOUBLE NONE 13 BK4 CAI CAT DOUBLE NONE 14 BK4 CAJ CAP DOUBLE NONE 15 BK4 CAK CAU DOUBLE NONE 16 BK4 NAN CAS DOUBLE NONE 17 BK4 CAP CAF SINGLE NONE 18 BK4 CAP OAO SINGLE NONE 19 BK4 CAQ CAK SINGLE NONE 20 BK4 CAS CAQ SINGLE NONE 21 BK4 CAT CAJ SINGLE NONE 22 BK4 CAT CAU SINGLE NONE 23 BK4 CAU CAH SINGLE NONE 24 BK4 CAX CAB SINGLE NONE 25 BK4 CAX NAY SINGLE NONE 26 BK4 NAY C4 SINGLE NONE 27 BK4 NAY NAN SINGLE NONE 28 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys BK4 MurckoScaffold S1 scaffold 'c1ccc2cc(-c3n[nH]c4ncncc34)ccc2c1' InChI=1S/C15H10N4/c1-2-4-11-7-12(6-5-10(11)3-1)14-13-8-16-9-17-15(13)19-18-14/h1-9H,(H,16,17,18,19) ZWIMZZMBPBVLFF-UHFFFAOYSA-N BK4 napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N BK4 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N BK4 pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N BK4 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal BK4 N1 S1 1 BK4 C2 S1 1 BK4 N3 S1 1 BK4 C4 S1 1 BK4 C5 S1 1 BK4 C6 S1 1 BK4 CAF S1 1 BK4 CAG S1 1 BK4 CAH S1 1 BK4 CAI S1 1 BK4 CAJ S1 1 BK4 CAK S1 1 BK4 NAN S1 1 BK4 CAP S1 1 BK4 CAQ S1 1 BK4 CAS S1 1 BK4 CAT S1 1 BK4 CAU S1 1 BK4 NAY S1 1 BK4 CAF F1 1 BK4 CAP F1 1 BK4 CAJ F1 1 BK4 CAT F1 1 BK4 CAU F1 1 BK4 CAH F1 1 BK4 CAK F1 1 BK4 CAQ F1 1 BK4 CAG F1 1 BK4 CAI F1 1 BK4 CAF F2 1 BK4 CAH F2 1 BK4 CAU F2 1 BK4 CAT F2 1 BK4 CAJ F2 1 BK4 CAP F2 1 BK4 CAG F2 2 BK4 CAI F2 2 BK4 CAT F2 2 BK4 CAU F2 2 BK4 CAK F2 2 BK4 CAQ F2 2 BK4 C4 F3 1 BK4 C5 F3 1 BK4 CAS F3 1 BK4 NAN F3 1 BK4 NAY F3 1 BK4 C5 F4 1 BK4 C4 F4 1 BK4 N3 F4 1 BK4 C2 F4 1 BK4 N1 F4 1 BK4 C6 F4 1 # _pdbe_chem_comp_rdkit_properties.comp_id BK4 _pdbe_chem_comp_rdkit_properties.exactmw 333.159 _pdbe_chem_comp_rdkit_properties.amw 333.395 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 6 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 2 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7 _pdbe_chem_comp_rdkit_properties.NumHBD 1 _pdbe_chem_comp_rdkit_properties.NumHBA 6 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25 _pdbe_chem_comp_rdkit_properties.NumAtoms 44 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 0 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.211 _pdbe_chem_comp_rdkit_properties.NumRings 4 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 4 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 171.622 _pdbe_chem_comp_rdkit_properties.tpsa 78.850 _pdbe_chem_comp_rdkit_properties.CrippenClogP 1.738 _pdbe_chem_comp_rdkit_properties.CrippenMR 92.446 _pdbe_chem_comp_rdkit_properties.chi0v 12.144 _pdbe_chem_comp_rdkit_properties.chi1v 6.647 _pdbe_chem_comp_rdkit_properties.chi2v 3.299 _pdbe_chem_comp_rdkit_properties.chi3v 3.299 _pdbe_chem_comp_rdkit_properties.chi4v 2.252 _pdbe_chem_comp_rdkit_properties.chi0n 31.144 _pdbe_chem_comp_rdkit_properties.chi1n 16.042 _pdbe_chem_comp_rdkit_properties.chi2n 3.299 _pdbe_chem_comp_rdkit_properties.chi3n 3.299 _pdbe_chem_comp_rdkit_properties.chi4n 2.252 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.150 _pdbe_chem_comp_rdkit_properties.kappa1 4.940 _pdbe_chem_comp_rdkit_properties.kappa2 5.734 _pdbe_chem_comp_rdkit_properties.kappa3 2.462 _pdbe_chem_comp_rdkit_properties.Phi 1.133 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id BK4 UniChem ChEMBL CHEMBL1785020 BK4 UniChem PDBe BK4 BK4 UniChem ZINC ZINC000071294976 BK4 UniChem SureChEMBL SCHEMBL12436124 BK4 UniChem 'PubChem TPHARMA' 104220148 BK4 UniChem PubChem 49850407 BK4 UniChem BindingDb 50345739 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal BK4 N1 -2.645 3.113 2.354 ETKDGv3 1 BK4 C2 -4.016 2.728 2.092 ETKDGv3 2 BK4 N3 -4.284 1.762 1.255 ETKDGv3 3 BK4 C4 -3.194 1.072 0.632 ETKDGv3 4 BK4 C5 -1.942 1.350 0.909 ETKDGv3 5 BK4 C6 -1.640 2.484 1.804 ETKDGv3 6 BK4 CAA 7.383 -1.699 -1.645 ETKDGv3 7 BK4 CAB -5.509 0.067 -1.304 ETKDGv3 8 BK4 CAC -4.994 -1.547 0.574 ETKDGv3 9 BK4 NAD -0.311 2.969 1.998 ETKDGv3 10 BK4 CAF 4.477 -1.103 -1.972 ETKDGv3 11 BK4 CAG 0.917 0.066 1.459 ETKDGv3 12 BK4 CAH 3.171 -0.829 -2.082 ETKDGv3 13 BK4 CAI 2.361 -0.236 1.546 ETKDGv3 14 BK4 CAJ 4.498 -0.820 0.474 ETKDGv3 15 BK4 CAK 1.063 -0.232 -0.962 ETKDGv3 16 BK4 NAN -1.947 -0.427 -0.499 ETKDGv3 17 BK4 OAO 6.542 -1.385 -0.541 ETKDGv3 18 BK4 CAP 5.174 -1.099 -0.651 ETKDGv3 19 BK4 CAQ 0.297 0.093 0.266 ETKDGv3 20 BK4 CAS -1.149 0.351 0.171 ETKDGv3 21 BK4 CAT 3.056 -0.510 0.431 ETKDGv3 22 BK4 CAU 2.373 -0.512 -0.884 ETKDGv3 23 BK4 CAX -4.440 -0.811 -0.648 ETKDGv3 24 BK4 NAY -3.269 -0.015 -0.279 ETKDGv3 25 BK4 H2 -4.825 3.261 2.573 ETKDGv3 26 BK4 HAA 8.414 -1.880 -1.276 ETKDGv3 27 BK4 HAAA 7.407 -0.850 -2.361 ETKDGv3 28 BK4 HAAB 7.021 -2.617 -2.153 ETKDGv3 29 BK4 HAB -5.068 0.623 -2.159 ETKDGv3 30 BK4 HABA -6.336 -0.567 -1.689 ETKDGv3 31 BK4 HABB -5.930 0.795 -0.581 ETKDGv3 32 BK4 HAC -4.198 -2.176 1.027 ETKDGv3 33 BK4 HACA -5.835 -2.208 0.273 ETKDGv3 34 BK4 HACB -5.359 -0.828 1.337 ETKDGv3 35 BK4 HNAD 0.467 2.677 1.368 ETKDGv3 36 BK4 HNAA -0.126 3.729 2.689 ETKDGv3 37 BK4 HAF 5.029 -1.330 -2.874 ETKDGv3 38 BK4 HAG 0.366 0.250 2.374 ETKDGv3 39 BK4 HAH 2.704 -0.842 -3.060 ETKDGv3 40 BK4 HAI 2.845 -0.237 2.515 ETKDGv3 41 BK4 HAJ 5.019 -0.822 1.425 ETKDGv3 42 BK4 HAK 0.560 -0.233 -1.922 ETKDGv3 43 BK4 HAX -4.126 -1.573 -1.396 ETKDGv3 44 #