data_BM0
#
_chem_comp.id BM0
_chem_comp.name 1-butyl-3-methyl-1H-imidazol-3-ium
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H15 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 1-butyl-3-methylimidazolium
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2015-07-24
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 139.218
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BM0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5CT4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BM0 C1 C1 C 0 1 N N N N N N 17.970 16.496 98.461 -3.364 -0.067 -0.334 C1 BM0 1
BM0 C2 C2 C 0 1 N N N N N N 18.715 15.434 97.700 -1.929 -0.091 0.196 C2 BM0 2
BM0 C3 C3 C 0 1 N N N N N N 17.865 14.212 97.468 -0.974 0.391 -0.898 C3 BM0 3
BM0 C4 C4 C 0 1 Y N N N N N 19.355 13.104 99.201 1.051 1.393 0.241 C4 BM0 4
BM0 C5 C5 C 0 1 Y N N N N N 19.995 11.876 99.364 2.287 0.947 0.537 C5 BM0 5
BM0 C6 C6 C 0 1 Y N N N N N 18.885 11.799 97.383 1.265 -0.668 -0.465 C6 BM0 6
BM0 C7 C7 C 0 1 N N N N N N 20.226 9.705 98.091 3.579 -1.162 0.214 C7 BM0 7
BM0 N1 N1 N 1 1 Y N N N N N 19.716 11.054 98.243 2.390 -0.315 0.094 N1 BM0 8
BM0 N N2 N 0 1 Y N N N N N 18.638 13.076 97.952 0.401 0.367 -0.390 N BM0 9
BM0 C C8 C 0 1 N N N N N N 18.951 17.584 98.815 -4.320 -0.549 0.759 C BM0 10
BM0 H4 H1 H 0 1 N N N N N N 17.164 16.908 97.836 -3.627 0.951 -0.624 H4 BM0 11
BM0 H3 H2 H 0 1 N N N N N N 17.540 16.067 99.378 -3.443 -0.723 -1.201 H3 BM0 12
BM0 H5 H3 H 0 1 N N N N N N 19.607 15.144 98.275 -1.851 0.565 1.062 H5 BM0 13
BM0 H6 H4 H 0 1 N N N N N N 19.023 15.843 96.727 -1.666 -1.109 0.485 H6 BM0 14
BM0 H8 H5 H 0 1 N N N N N N 16.920 14.294 98.025 -1.052 -0.266 -1.764 H8 BM0 15
BM0 H7 H6 H 0 1 N N N N N N 17.649 14.096 96.396 -1.236 1.408 -1.187 H7 BM0 16
BM0 H9 H7 H 0 1 N N N N N N 19.391 13.933 99.892 0.649 2.370 0.463 H9 BM0 17
BM0 H10 H8 H 0 1 N N N N N N 20.606 11.596 100.209 3.060 1.507 1.042 H10 BM0 18
BM0 H11 H9 H 0 1 N N N N N N 18.496 11.452 96.437 1.059 -1.629 -0.913 H11 BM0 19
BM0 H13 H10 H 0 1 N N N N N N 20.847 9.447 98.961 4.214 -1.022 -0.661 H13 BM0 20
BM0 H14 H11 H 0 1 N N N N N N 19.384 9.001 98.020 4.132 -0.886 1.112 H14 BM0 21
BM0 H12 H12 H 0 1 N N N N N N 20.834 9.644 97.176 3.277 -2.207 0.280 H12 BM0 22
BM0 H H13 H 0 1 N N N N N N 18.433 18.377 99.374 -4.057 -1.566 1.048 H BM0 23
BM0 H2 H14 H 0 1 N N N N N N 19.756 17.164 99.436 -4.241 0.108 1.625 H2 BM0 24
BM0 H1 H15 H 0 1 N N N N N N 19.380 18.005 97.894 -5.343 -0.531 0.381 H1 BM0 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BM0 C6 N SING Y N 1
BM0 C6 N1 DOUB Y N 2
BM0 C3 C2 SING N N 3
BM0 C3 N SING N N 4
BM0 C2 C1 SING N N 5
BM0 N C4 SING Y N 6
BM0 C7 N1 SING N N 7
BM0 N1 C5 SING Y N 8
BM0 C1 C SING N N 9
BM0 C4 C5 DOUB Y N 10
BM0 C1 H4 SING N N 11
BM0 C1 H3 SING N N 12
BM0 C2 H5 SING N N 13
BM0 C2 H6 SING N N 14
BM0 C3 H8 SING N N 15
BM0 C3 H7 SING N N 16
BM0 C4 H9 SING N N 17
BM0 C5 H10 SING N N 18
BM0 C6 H11 SING N N 19
BM0 C7 H13 SING N N 20
BM0 C7 H14 SING N N 21
BM0 C7 H12 SING N N 22
BM0 C H SING N N 23
BM0 C H2 SING N N 24
BM0 C H1 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BM0 SMILES ACDLabs 12.01 C(C)CCn1cc[n+](c1)C
BM0 InChI InChI 1.03 InChI=1S/C8H15N2/c1-3-4-5-10-7-6-9(2)8-10/h6-8H,3-5H2,1-2H3/q+1
BM0 InChIKey InChI 1.03 IQQRAVYLUAZUGX-UHFFFAOYSA-N
BM0 SMILES_CANONICAL CACTVS 3.385 CCCCn1cc[n+](C)c1
BM0 SMILES CACTVS 3.385 CCCCn1cc[n+](C)c1
BM0 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 CCCCn1cc[n+](c1)C
BM0 SMILES "OpenEye OEToolkits" 1.9.2 CCCCn1cc[n+](c1)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BM0 "SYSTEMATIC NAME" ACDLabs 12.01 1-butyl-3-methyl-1H-imidazol-3-ium
BM0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 1-butyl-3-methyl-imidazol-3-ium
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BM0 'Create component' 2015-07-24 RCSB
BM0 'Initial release' 2015-11-04 RCSB
BM0 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id BM0
_pdbx_chem_comp_synonyms.name 1-butyl-3-methylimidazolium
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id BM0
_pdbe_chem_comp_synonyms.name 1-butyl-3-methylimidazolium
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BM0 C1 C 4.299 -3.261 1
BM0 C2 C 4.299 -1.761 2
BM0 C3 C 5.598 -1.011 3
BM0 C4 C 4.385 1.371 4
BM0 C5 C 4.848 2.797 5
BM0 C6 C 6.812 1.371 6
BM0 C7 C 7.230 4.011 7
BM0 N1 N 6.348 2.797 8
BM0 N N 5.598 0.489 9
BM0 C C 3.000 -4.011 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BM0 C6 N SINGLE NONE 1
BM0 C6 N1 DOUBLE NONE 2
BM0 C3 C2 SINGLE NONE 3
BM0 C3 N SINGLE NONE 4
BM0 C2 C1 SINGLE NONE 5
BM0 N C4 SINGLE NONE 6
BM0 C7 N1 SINGLE NONE 7
BM0 N1 C5 SINGLE NONE 8
BM0 C1 C SINGLE NONE 9
BM0 C4 C5 DOUBLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BM0 MurckoScaffold S1 scaffold 'c1c[nH+]c[nH]1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5)/p+1 RAXXELZNTBOGNW-UHFFFAOYSA-O
BM0 imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BM0 C4 S1 1
BM0 C5 S1 1
BM0 C6 S1 1
BM0 N1 S1 1
BM0 N S1 1
BM0 C4 F1 1
BM0 C5 F1 1
BM0 N1 F1 1
BM0 C6 F1 1
BM0 N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BM0
_pdbe_chem_comp_rdkit_properties.exactmw 139.123
_pdbe_chem_comp_rdkit_properties.amw 139.222
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 83.179
_pdbe_chem_comp_rdkit_properties.tpsa 8.810
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.113
_pdbe_chem_comp_rdkit_properties.CrippenMR 40.516
_pdbe_chem_comp_rdkit_properties.chi0v 4.894
_pdbe_chem_comp_rdkit_properties.chi1v 2.342
_pdbe_chem_comp_rdkit_properties.chi2v 0.704
_pdbe_chem_comp_rdkit_properties.chi3v 0.704
_pdbe_chem_comp_rdkit_properties.chi4v 0.387
_pdbe_chem_comp_rdkit_properties.chi0n 19.894
_pdbe_chem_comp_rdkit_properties.chi1n 9.842
_pdbe_chem_comp_rdkit_properties.chi2n 0.704
_pdbe_chem_comp_rdkit_properties.chi3n 0.704
_pdbe_chem_comp_rdkit_properties.chi4n 0.387
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.790
_pdbe_chem_comp_rdkit_properties.kappa1 1.059
_pdbe_chem_comp_rdkit_properties.kappa2 3.396
_pdbe_chem_comp_rdkit_properties.kappa3 1.865
_pdbe_chem_comp_rdkit_properties.Phi 0.360
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BM0 UniChem ChEMBL CHEMBL1198608
BM0 UniChem PDBe BM0
BM0 UniChem ChEBI 61333
BM0 UniChem ZINC ZINC000015783059
BM0 UniChem eMolecules 36378220
BM0 UniChem fdasrs 02N2G4U2OV
BM0 UniChem Nikkaji J498.236C
BM0 UniChem 'EPA CompTox Dashboard' DTXSID6047238
BM0 UniChem ChemicalBook CB5502408
BM0 UniChem Nikkaji J2.305.056K
BM0 UniChem SureChEMBL SCHEMBL34968
BM0 UniChem 'PubChem TPHARMA' 16615615
BM0 UniChem 'PubChem TPHARMA' 16725235
BM0 UniChem PubChem 2734162
BM0 UniChem Mcule MCULE-9716349057
BM0 UniChem ACTor 80432-08-2
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BM0 C1 -2.936 0.110 0.032 ETKDGv3 1
BM0 C2 -1.428 -0.140 -0.082 ETKDGv3 2
BM0 C3 -0.709 1.084 -0.656 ETKDGv3 3
BM0 C4 1.370 0.041 -1.751 ETKDGv3 4
BM0 C5 2.563 -0.318 -1.303 ETKDGv3 5
BM0 C6 1.657 0.836 0.318 ETKDGv3 6
BM0 C7 3.847 -0.090 0.914 ETKDGv3 7
BM0 N1 2.744 0.207 0.010 ETKDGv3 8
BM0 N 0.724 0.831 -0.757 ETKDGv3 9
BM0 C -3.655 -1.109 0.603 ETKDGv3 10
BM0 H4 -3.122 0.981 0.696 ETKDGv3 11
BM0 H3 -3.355 0.336 -0.973 ETKDGv3 12
BM0 H5 -1.247 -1.015 -0.745 ETKDGv3 13
BM0 H6 -1.014 -0.369 0.924 ETKDGv3 14
BM0 H8 -0.879 1.965 0.001 ETKDGv3 15
BM0 H7 -1.111 1.320 -1.665 ETKDGv3 16
BM0 H9 0.933 -0.251 -2.697 ETKDGv3 17
BM0 H10 3.272 -0.947 -1.826 ETKDGv3 18
BM0 H11 1.461 1.263 1.294 ETKDGv3 19
BM0 H13 3.602 -0.989 1.518 ETKDGv3 20
BM0 H14 4.030 0.771 1.592 ETKDGv3 21
BM0 H12 4.772 -0.285 0.331 ETKDGv3 22
BM0 H -4.743 -0.899 0.674 ETKDGv3 23
BM0 H2 -3.271 -1.342 1.619 ETKDGv3 24
BM0 H1 -3.505 -1.990 -0.057 ETKDGv3 25
#