data_BME
#
_chem_comp.id BME
_chem_comp.name BETA-MERCAPTOETHANOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C2 H6 O S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces SEO
_chem_comp.formula_weight 78.133
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BME
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DIF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BME C1 C1 C 0 1 N N N N N N 15.380 16.489 22.967 0.474 0.000 1.059 C1 BME 1
BME C2 C2 C 0 1 N N N N N N 15.341 15.038 23.446 -0.621 0.000 -0.007 C2 BME 2
BME O1 O1 O 0 1 N N N N N N 15.298 16.553 21.552 -0.125 0.000 2.357 O1 BME 3
BME S2 S2 S 0 1 N N N N N N 16.850 14.106 23.075 0.138 0.000 -1.654 S2 BME 4
BME H11 1H1 H 0 1 N N N N N N 16.291 16.993 23.295 1.092 0.890 0.945 H11 BME 5
BME H12 2H1 H 0 1 N N N N N N 14.525 17.044 23.355 1.092 -0.890 0.945 H12 BME 6
BME H21 1H2 H 0 1 N N N N N N 15.196 15.022 24.526 -1.240 -0.890 0.106 H21 BME 7
BME H22 2H2 H 0 1 N N N N N N 14.487 14.508 23.016 -1.240 0.890 0.106 H22 BME 8
BME HO1 HO1 H 0 1 N N N N N N 14.835 17.373 21.345 0.598 0.000 2.999 HO1 BME 9
BME HS2 HS2 H 0 1 N N N N N N 16.825 13.204 23.372 -0.965 0.000 -2.422 HS2 BME 10
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BME C1 C2 SING N N 1
BME C1 O1 SING N N 2
BME C1 H11 SING N N 3
BME C1 H12 SING N N 4
BME C2 S2 SING N N 5
BME C2 H21 SING N N 6
BME C2 H22 SING N N 7
BME O1 HO1 SING N N 8
BME S2 HS2 SING N N 9
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BME SMILES ACDLabs 10.04 OCCS
BME SMILES_CANONICAL CACTVS 3.341 OCCS
BME SMILES CACTVS 3.341 OCCS
BME SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'C(CS)O'
BME SMILES 'OpenEye OEToolkits' 1.5.0 'C(CS)O'
BME InChI InChI 1.03 InChI=1S/C2H6OS/c3-1-2-4/h3-4H,1-2H2
BME InChIKey InChI 1.03 DGVVWUTYPXICAM-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BME 'SYSTEMATIC NAME' ACDLabs 10.04 2-sulfanylethanol
BME 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 2-sulfanylethanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BME 'Create component' 1999-07-08 EBI
BME 'Modify descriptor' 2011-06-04 RCSB
BME 'Modify PCM' 2024-09-27 PDBE
#
_pdbe_chem_comp_drugbank_details.comp_id BME
_pdbe_chem_comp_drugbank_details.drugbank_id DB03345
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Mercaptoethanol
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 60-24-2
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
BME 2-mercaptoethanol DrugBank ?
BME beta-mercaptoethanol DrugBank ?
BME Thiomonoglycol DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BME
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03345
_pdbe_chem_comp_drugbank_classification.parent Alkylthiols
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Thiols
_pdbe_chem_comp_drugbank_classification.superclass 'Organosulfur compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as alkylthiols. These are organic compounds containing the thiol functional group linked to an alkyl chain.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
BME DB03345 Endolysin 'Enterobacteria phage T4' P00720 unknown 1
BME DB03345 'Lactoylglutathione lyase' Humans Q04760 unknown 2
BME DB03345 "Pyridoxine-5'-phosphate oxidase" Humans Q9NVS9 unknown 3
BME DB03345 'Glucose--fructose oxidoreductase' 'Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)' Q07982 unknown 4
BME DB03345 Alpha-1-antitrypsin Humans P01009 unknown 5
BME DB03345 "Pyridoxine/pyridoxamine 5'-phosphate oxidase" 'Escherichia coli (strain K12)' P0AFI7 unknown 6
BME DB03345 Galectin-1 Humans P09382 unknown 7
BME DB03345 'Protein ninB' 'Enterobacteria phage lambda' P03765 unknown 8
BME DB03345 'Polycomb protein SCMH1' Humans Q96GD3 unknown 9
BME DB03345 'Endonuclease III' 'Helicobacter pylori (strain ATCC 700392 / 26695)' O25323 unknown 10
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BME C1 C 5.104 -0.375 1
BME C2 C 6.404 0.375 2
BME O1 O 3.805 0.375 3
BME S2 S 7.702 -0.375 4
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BME C1 C2 SINGLE NONE 1
BME C1 O1 SINGLE NONE 2
BME C2 S2 SINGLE NONE 3
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id BME
_pdbe_chem_comp_rdkit_properties.exactmw 78.014
_pdbe_chem_comp_rdkit_properties.amw 78.136
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtoms 10
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 39.251
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.091
_pdbe_chem_comp_rdkit_properties.CrippenMR 20.939
_pdbe_chem_comp_rdkit_properties.chi0v 2.633
_pdbe_chem_comp_rdkit_properties.chi1v 1.066
_pdbe_chem_comp_rdkit_properties.chi2v 0.125
_pdbe_chem_comp_rdkit_properties.chi3v 0.125
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 7.816
_pdbe_chem_comp_rdkit_properties.chi1n 3.475
_pdbe_chem_comp_rdkit_properties.chi2n 0.042
_pdbe_chem_comp_rdkit_properties.chi3n 0.042
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.310
_pdbe_chem_comp_rdkit_properties.kappa1 0.545
_pdbe_chem_comp_rdkit_properties.kappa2 3.310
_pdbe_chem_comp_rdkit_properties.kappa3 2.310
_pdbe_chem_comp_rdkit_properties.Phi 0.451
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BME UniChem ChEMBL CHEMBL254951
BME UniChem DrugBank DB03345
BME UniChem PDBe BME
BME UniChem 'KEGG LIGAND' C00928
BME UniChem ChEBI 41218
BME UniChem ZINC ZINC000008216595
BME UniChem eMolecules 516414
BME UniChem fdasrs 14R9K67URN
BME UniChem SureChEMBL SCHEMBL5702
BME UniChem HMDB HMDB0245190
BME UniChem Mcule MCULE-2252943288
BME UniChem NMRShiftDB 10016661
BME UniChem ACTor 60-24-2
BME UniChem Nikkaji J1.396J
BME UniChem BindingDb 7971
BME UniChem BRENDA 104284
BME UniChem BRENDA 112566
BME UniChem BRENDA 1623
BME UniChem BRENDA 18188
BME UniChem BRENDA 221607
BME UniChem BRENDA 31655
BME UniChem BRENDA 51103
BME UniChem BRENDA 63
BME UniChem BRENDA 71579
BME UniChem BRENDA 773
BME UniChem BRENDA 95173
BME UniChem BRENDA 98050
BME UniChem ChemicalBook CB8215961
BME UniChem 'Probes And Drugs' PD000789
BME UniChem 'EPA CompTox Dashboard' DTXSID4026343
BME UniChem 'PubChem TPHARMA' 14769229
BME UniChem PubChem 1567
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BME C1 -0.837 0.099 0.123 ETKDGv3 1
BME C2 0.387 -0.794 -0.072 ETKDGv3 2
BME O1 -1.101 0.835 -1.042 ETKDGv3 3
BME S2 1.906 0.195 -0.256 ETKDGv3 4
BME H11 -1.716 -0.545 0.336 ETKDGv3 5
BME H12 -0.695 0.771 1.000 ETKDGv3 6
BME H21 0.253 -1.424 -0.977 ETKDGv3 7
BME H22 0.501 -1.464 0.807 ETKDGv3 8
BME HO1 -0.553 1.661 -0.990 ETKDGv3 9
BME HS2 1.855 0.665 1.071 ETKDGv3 10
#