data_BNB
#
_chem_comp.id BNB
_chem_comp.name
N-[2-methyl-3-[4-methyl-6-[4-(4-methylpiperazine-1-carbonyl)anilino]-5-oxo-pyrazin-2-yl]phenyl]-4-(1-piperidyl)benzamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H41 N7 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-11
_chem_comp.pdbx_modified_date 2018-08-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 619.756
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BNB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6EP9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BNB C1 C1 C 0 1 Y N N N N N 25.467 6.250 3.254 1.284 -3.152 -1.152 C1 BNB 1
BNB C2 C2 C 0 1 Y N N N N N 26.655 5.649 2.811 1.312 -3.568 -2.482 C2 BNB 2
BNB C3 C3 C 0 1 Y N N N N N 27.872 5.948 3.400 0.240 -3.305 -3.311 C3 BNB 3
BNB C4 C4 C 0 1 Y N N N N N 27.945 6.851 4.452 -0.864 -2.630 -2.825 C4 BNB 4
BNB C5 C5 C 0 1 Y N N N N N 26.779 7.457 4.921 -0.901 -2.212 -1.500 C5 BNB 5
BNB C6 C6 C 0 1 Y N N N N N 25.539 7.172 4.324 0.172 -2.473 -0.662 C6 BNB 6
BNB C8 C7 C 0 1 N N N N N N 24.296 7.864 4.849 0.135 -2.020 0.775 C8 BNB 7
BNB C9 C8 C 0 1 N N N N N N 26.521 8.078 7.270 -3.248 -1.828 -1.480 C9 BNB 8
BNB C12 C9 C 0 1 Y N N N N N 26.531 8.848 9.662 -4.295 -0.286 0.170 C12 BNB 9
BNB C19 C10 C 0 1 N N N N N N 24.519 11.908 12.710 -9.878 1.828 0.389 C19 BNB 10
BNB C18 C11 C 0 1 N N N N N N 26.042 11.856 12.504 -8.582 1.299 -0.230 C18 BNB 11
BNB C20 C12 C 0 1 N N N N N N 23.937 13.257 12.259 -9.538 2.784 1.536 C20 BNB 12
BNB C21 C13 C 0 1 N N N N N N 24.316 13.493 10.793 -8.680 2.046 2.567 C21 BNB 13
BNB C22 C14 C 0 1 N N N N N N 25.850 13.514 10.681 -7.418 1.512 1.885 C22 BNB 14
BNB C23 C15 C 0 1 N N N N N N 24.198 5.863 2.555 2.434 -3.440 -0.259 C23 BNB 15
BNB C16 C16 C 0 1 Y N N N N N 26.502 10.498 7.888 -5.714 -1.506 -1.364 C16 BNB 16
BNB C15 C17 C 0 1 Y N N N N N 26.492 11.513 8.827 -6.822 -0.905 -0.811 C15 BNB 17
BNB C24 C18 C 0 1 N N N N N N 23.035 5.682 3.260 2.846 -4.727 -0.097 C24 BNB 18
BNB N7 N1 N 0 1 N N N N N N 26.820 8.382 5.976 -2.020 -1.529 -1.013 N7 BNB 19
BNB C10 C19 C 0 1 Y N N N N N 26.532 9.151 8.293 -4.439 -1.196 -0.881 C10 BNB 20
BNB O11 O1 O 0 1 N N N N N N 26.212 6.941 7.597 -3.375 -2.619 -2.394 O11 BNB 21
BNB C13 C20 C 0 1 Y N N N N N 26.517 9.871 10.591 -5.407 0.303 0.726 C13 BNB 22
BNB C14 C21 C 0 1 Y N N N N N 26.489 11.221 10.197 -6.675 -0.004 0.240 C14 BNB 23
BNB N17 N2 N 0 1 N N N N N N 26.492 12.264 11.150 -7.797 0.601 0.796 N17 BNB 24
BNB N25 N3 N 0 1 N N N N N N 21.872 5.323 2.635 3.896 -5.025 0.715 N25 BNB 25
BNB C26 C22 C 0 1 N N N N N N 21.882 5.124 1.286 4.533 -4.026 1.364 C26 BNB 26
BNB C27 C23 C 0 1 N N N N N N 23.138 5.311 0.547 4.065 -2.649 1.168 C27 BNB 27
BNB N28 N4 N 0 1 N N N N N N 24.222 5.671 1.216 3.046 -2.425 0.366 N28 BNB 28
BNB O29 O2 O 0 1 N N N N N N 20.877 4.799 0.667 5.477 -4.263 2.098 O29 BNB 29
BNB C30 C24 C 0 1 N N N N N N 20.636 5.155 3.411 4.332 -6.414 0.883 C30 BNB 30
BNB N31 N5 N 0 1 N N N N N N 23.093 5.088 -0.834 4.696 -1.593 1.814 N31 BNB 31
BNB C32 C25 C 0 1 Y N N N N N 24.113 5.214 -1.776 4.245 -0.291 1.622 C32 BNB 32
BNB C33 C26 C 0 1 Y N N N N N 25.399 5.664 -1.461 4.330 0.633 2.659 C33 BNB 33
BNB C34 C27 C 0 1 Y N N N N N 26.362 5.772 -2.448 3.885 1.922 2.473 C34 BNB 34
BNB C35 C28 C 0 1 Y N N N N N 26.056 5.436 -3.776 3.348 2.303 1.240 C35 BNB 35
BNB C36 C29 C 0 1 Y N N N N N 24.766 4.972 -4.087 3.263 1.372 0.200 C36 BNB 36
BNB C37 C30 C 0 1 Y N N N N N 23.810 4.871 -3.097 3.715 0.086 0.391 C37 BNB 37
BNB C38 C31 C 0 1 N N N N N N 27.094 5.541 -4.835 2.869 3.683 1.036 C38 BNB 38
BNB N39 N6 N 0 1 N N N N N N 26.990 6.381 -5.901 3.113 4.316 -0.128 N39 BNB 39
BNB O40 O3 O 0 1 N N N N N N 28.082 4.835 -4.739 2.255 4.250 1.919 O40 BNB 40
BNB C41 C32 C 0 1 N N N N N N 28.054 6.442 -6.935 2.731 5.724 -0.317 C41 BNB 41
BNB C42 C33 C 0 1 N N N N N N 27.415 6.199 -8.315 3.950 6.494 -0.837 C42 BNB 42
BNB N43 N7 N 0 1 N N N N N N 26.325 7.167 -8.551 4.471 5.826 -2.037 N43 BNB 43
BNB C44 C34 C 0 1 N N N N N N 25.277 7.005 -7.525 4.946 4.470 -1.728 C44 BNB 44
BNB C45 C35 C 0 1 N N N N N N 25.837 7.283 -6.125 3.774 3.619 -1.242 C45 BNB 45
BNB C46 C36 C 0 1 N N N N N N 25.703 6.791 -9.831 5.532 6.625 -2.665 C46 BNB 46
BNB H1 H1 H 0 1 N N N N N N 26.620 4.941 1.996 2.174 -4.095 -2.865 H1 BNB 47
BNB H2 H2 H 0 1 N N N N N N 28.773 5.474 3.038 0.264 -3.627 -4.341 H2 BNB 48
BNB H3 H3 H 0 1 N N N N N N 28.898 7.083 4.904 -1.701 -2.427 -3.477 H3 BNB 49
BNB H4 H4 H 0 1 N N N N N N 23.849 7.258 5.651 0.476 -0.987 0.840 H4 BNB 50
BNB H5 H5 H 0 1 N N N N N N 24.567 8.854 5.245 -0.885 -2.091 1.152 H5 BNB 51
BNB H6 H6 H 0 1 N N N N N N 23.570 7.983 4.031 0.788 -2.656 1.373 H6 BNB 52
BNB H7 H7 H 0 1 N N N N N N 26.541 7.819 9.989 -3.312 -0.048 0.548 H7 BNB 53
BNB H8 H8 H 0 1 N N N N N N 24.297 11.762 13.777 -10.453 2.359 -0.370 H8 BNB 54
BNB H9 H9 H 0 1 N N N N N N 24.051 11.103 12.124 -10.465 0.993 0.772 H9 BNB 55
BNB H10 H10 H 0 1 N N N N N N 26.378 10.824 12.682 -8.821 0.607 -1.038 H10 BNB 56
BNB H11 H11 H 0 1 N N N N N N 26.512 12.526 13.239 -8.002 2.133 -0.626 H11 BNB 57
BNB H12 H12 H 0 1 N N N N N N 24.349 14.064 12.882 -8.985 3.638 1.146 H12 BNB 58
BNB H13 H13 H 0 1 N N N N N N 22.842 13.239 12.359 -10.458 3.129 2.007 H13 BNB 59
BNB H14 H14 H 0 1 N N N N N N 23.906 14.456 10.455 -8.399 2.734 3.365 H14 BNB 60
BNB H15 H15 H 0 1 N N N N N N 23.910 12.683 10.170 -9.247 1.215 2.986 H15 BNB 61
BNB H16 H16 H 0 1 N N N N N N 26.120 13.670 9.626 -6.844 2.345 1.479 H16 BNB 62
BNB H17 H17 H 0 1 N N N N N N 26.232 14.350 11.285 -6.812 0.974 2.614 H17 BNB 63
BNB H18 H18 H 0 1 N N N N N N 26.487 10.741 6.836 -5.828 -2.209 -2.176 H18 BNB 64
BNB H19 H19 H 0 1 N N N N N N 26.486 12.542 8.500 -7.807 -1.144 -1.184 H19 BNB 65
BNB H20 H20 H 0 1 N N N N N N 23.038 5.826 4.330 2.332 -5.522 -0.619 H20 BNB 66
BNB H21 H21 H 0 1 N N N N N N 27.085 9.323 5.765 -1.912 -0.839 -0.339 H21 BNB 67
BNB H22 H22 H 0 1 N N N N N N 26.528 9.628 11.643 -5.297 1.002 1.541 H22 BNB 68
BNB H23 H23 H 0 1 N N N N N N 20.838 5.360 4.473 5.083 -6.653 0.131 H23 BNB 69
BNB H24 H24 H 0 1 N N N N N N 19.873 5.856 3.041 4.760 -6.542 1.877 H24 BNB 70
BNB H25 H25 H 0 1 N N N N N N 20.271 4.123 3.300 3.477 -7.079 0.767 H25 BNB 71
BNB H26 H26 H 0 1 N N N N N N 22.207 4.798 -1.195 5.451 -1.764 2.398 H26 BNB 72
BNB H27 H27 H 0 1 N N N N N N 25.641 5.928 -0.442 4.745 0.339 3.612 H27 BNB 73
BNB H28 H28 H 0 1 N N N N N N 27.354 6.116 -2.196 3.951 2.639 3.278 H28 BNB 74
BNB H29 H29 H 0 1 N N N N N N 24.523 4.694 -5.102 2.848 1.663 -0.754 H29 BNB 75
BNB H30 H30 H 0 1 N N N N N N 22.818 4.524 -3.345 3.651 -0.633 -0.412 H30 BNB 76
BNB H31 H31 H 0 1 N N N N N N 28.809 5.668 -6.735 1.920 5.790 -1.042 H31 BNB 77
BNB H32 H32 H 0 1 N N N N N N 28.531 7.433 -6.917 2.407 6.146 0.635 H32 BNB 78
BNB H33 H33 H 0 1 N N N N N N 27.008 5.178 -8.352 3.657 7.513 -1.087 H33 BNB 79
BNB H34 H34 H 0 1 N N N N N N 28.181 6.317 -9.096 4.722 6.515 -0.068 H34 BNB 80
BNB H36 H36 H 0 1 N N N N N N 24.458 7.709 -7.732 5.375 4.022 -2.624 H36 BNB 81
BNB H37 H37 H 0 1 N N N N N N 24.893 5.975 -7.562 5.704 4.520 -0.947 H37 BNB 82
BNB H38 H38 H 0 1 N N N N N N 26.165 8.331 -6.056 4.140 2.650 -0.904 H38 BNB 83
BNB H39 H39 H 0 1 N N N N N N 25.062 7.091 -5.369 3.060 3.481 -2.055 H39 BNB 84
BNB H40 H40 H 0 1 N N N N N N 24.879 7.484 -10.057 6.350 6.762 -1.959 H40 BNB 85
BNB H41 H41 H 0 1 N N N N N N 26.455 6.842 -10.633 5.900 6.107 -3.551 H41 BNB 86
BNB H42 H42 H 0 1 N N N N N N 25.310 5.766 -9.761 5.132 7.597 -2.953 H42 BNB 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BNB C46 N43 SING N N 1
BNB N43 C42 SING N N 2
BNB N43 C44 SING N N 3
BNB C42 C41 SING N N 4
BNB C44 C45 SING N N 5
BNB C41 N39 SING N N 6
BNB C45 N39 SING N N 7
BNB N39 C38 SING N N 8
BNB C38 O40 DOUB N N 9
BNB C38 C35 SING N N 10
BNB C36 C35 DOUB Y N 11
BNB C36 C37 SING Y N 12
BNB C35 C34 SING Y N 13
BNB C37 C32 DOUB Y N 14
BNB C34 C33 DOUB Y N 15
BNB C32 C33 SING Y N 16
BNB C32 N31 SING N N 17
BNB N31 C27 SING N N 18
BNB C27 N28 DOUB N N 19
BNB C27 C26 SING N N 20
BNB O29 C26 DOUB N N 21
BNB N28 C23 SING N N 22
BNB C26 N25 SING N N 23
BNB C23 C1 SING N N 24
BNB C23 C24 DOUB N N 25
BNB N25 C24 SING N N 26
BNB N25 C30 SING N N 27
BNB C2 C1 DOUB Y N 28
BNB C2 C3 SING Y N 29
BNB C1 C6 SING Y N 30
BNB C3 C4 DOUB Y N 31
BNB C6 C8 SING N N 32
BNB C6 C5 DOUB Y N 33
BNB C4 C5 SING Y N 34
BNB C5 N7 SING N N 35
BNB N7 C9 SING N N 36
BNB C9 O11 DOUB N N 37
BNB C9 C10 SING N N 38
BNB C16 C10 DOUB Y N 39
BNB C16 C15 SING Y N 40
BNB C10 C12 SING Y N 41
BNB C15 C14 DOUB Y N 42
BNB C12 C13 DOUB Y N 43
BNB C14 C13 SING Y N 44
BNB C14 N17 SING N N 45
BNB C22 C21 SING N N 46
BNB C22 N17 SING N N 47
BNB C21 C20 SING N N 48
BNB N17 C18 SING N N 49
BNB C20 C19 SING N N 50
BNB C18 C19 SING N N 51
BNB C2 H1 SING N N 52
BNB C3 H2 SING N N 53
BNB C4 H3 SING N N 54
BNB C8 H4 SING N N 55
BNB C8 H5 SING N N 56
BNB C8 H6 SING N N 57
BNB C12 H7 SING N N 58
BNB C19 H8 SING N N 59
BNB C19 H9 SING N N 60
BNB C18 H10 SING N N 61
BNB C18 H11 SING N N 62
BNB C20 H12 SING N N 63
BNB C20 H13 SING N N 64
BNB C21 H14 SING N N 65
BNB C21 H15 SING N N 66
BNB C22 H16 SING N N 67
BNB C22 H17 SING N N 68
BNB C16 H18 SING N N 69
BNB C15 H19 SING N N 70
BNB C24 H20 SING N N 71
BNB N7 H21 SING N N 72
BNB C13 H22 SING N N 73
BNB C30 H23 SING N N 74
BNB C30 H24 SING N N 75
BNB C30 H25 SING N N 76
BNB N31 H26 SING N N 77
BNB C33 H27 SING N N 78
BNB C34 H28 SING N N 79
BNB C36 H29 SING N N 80
BNB C37 H30 SING N N 81
BNB C41 H31 SING N N 82
BNB C41 H32 SING N N 83
BNB C42 H33 SING N N 84
BNB C42 H34 SING N N 85
BNB C44 H36 SING N N 86
BNB C44 H37 SING N N 87
BNB C45 H38 SING N N 88
BNB C45 H39 SING N N 89
BNB C46 H40 SING N N 90
BNB C46 H41 SING N N 91
BNB C46 H42 SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BNB InChI InChI 1.03 InChI=1S/C36H41N7O3/c1-25-30(8-7-9-31(25)39-34(44)26-12-16-29(17-13-26)42-18-5-4-6-19-42)32-24-41(3)36(46)33(38-32)37-28-14-10-27(11-15-28)35(45)43-22-20-40(2)21-23-43/h7-17,24H,4-6,18-23H2,1-3H3,(H,37,38)(H,39,44)
BNB InChIKey InChI 1.03 VDSHGYXLLSEPML-UHFFFAOYSA-N
BNB SMILES_CANONICAL CACTVS 3.385 CN1CCN(CC1)C(=O)c2ccc(NC3=NC(=CN(C)C3=O)c4cccc(NC(=O)c5ccc(cc5)N6CCCCC6)c4C)cc2
BNB SMILES CACTVS 3.385 CN1CCN(CC1)C(=O)c2ccc(NC3=NC(=CN(C)C3=O)c4cccc(NC(=O)c5ccc(cc5)N6CCCCC6)c4C)cc2
BNB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1c(cccc1NC(=O)c2ccc(cc2)N3CCCCC3)C4=CN(C(=O)C(=N4)Nc5ccc(cc5)C(=O)N6CCN(CC6)C)C
BNB SMILES "OpenEye OEToolkits" 2.0.6 Cc1c(cccc1NC(=O)c2ccc(cc2)N3CCCCC3)C4=CN(C(=O)C(=N4)Nc5ccc(cc5)C(=O)N6CCN(CC6)C)C
#
_pdbx_chem_comp_identifier.comp_id BNB
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
~{N}-[2-methyl-3-[4-methyl-6-[[4-(4-methylpiperazin-1-yl)carbonylphenyl]amino]-5-oxidanylidene-pyrazin-2-yl]phenyl]-4-piperidin-1-yl-benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BNB 'Create component' 2017-10-11 EBI
BNB 'Initial release' 2018-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BNB C1 C 13.392 4.500 1
BNB C2 C 14.691 5.250 2
BNB C3 C 15.990 4.500 3
BNB C4 C 15.990 3.000 4
BNB C5 C 14.691 2.250 5
BNB C6 C 13.392 3.000 6
BNB C8 C 12.093 2.250 7
BNB C9 C 15.990 0.000 8
BNB C12 C 17.290 -2.250 9
BNB C19 C 17.290 -8.250 10
BNB C18 C 17.290 -6.750 11
BNB C20 C 15.990 -9.000 12
BNB C21 C 14.691 -8.250 13
BNB C22 C 14.691 -6.750 14
BNB C23 C 12.093 5.250 15
BNB C16 C 14.691 -2.250 16
BNB C15 C 14.691 -3.750 17
BNB C24 C 12.093 6.750 18
BNB N7 N 14.691 0.750 19
BNB C10 C 15.990 -1.500 20
BNB O11 O 17.290 0.750 21
BNB C13 C 17.290 -3.750 22
BNB C14 C 15.990 -4.500 23
BNB N17 N 15.990 -6.000 24
BNB N25 N 10.794 7.500 25
BNB C26 C 9.495 6.750 26
BNB C27 C 9.495 5.250 27
BNB N28 N 10.794 4.500 28
BNB O29 O 8.196 7.500 29
BNB C30 C 10.794 9.000 30
BNB N31 N 8.196 4.500 31
BNB C32 C 8.196 3.000 32
BNB C33 C 9.495 2.250 33
BNB C34 C 9.495 0.750 34
BNB C35 C 8.196 0.000 35
BNB C36 C 6.897 0.750 36
BNB C37 C 6.897 2.250 37
BNB C38 C 8.196 -1.500 38
BNB N39 N 6.897 -2.250 39
BNB O40 O 9.495 -2.250 40
BNB C41 C 6.897 -3.750 41
BNB C42 C 5.598 -4.500 42
BNB N43 N 4.299 -3.750 43
BNB C44 C 4.299 -2.250 44
BNB C45 C 5.598 -1.500 45
BNB C46 C 3.000 -4.500 46
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BNB C46 N43 SINGLE NONE 1
BNB N43 C42 SINGLE NONE 2
BNB N43 C44 SINGLE NONE 3
BNB C42 C41 SINGLE NONE 4
BNB C44 C45 SINGLE NONE 5
BNB C41 N39 SINGLE NONE 6
BNB C45 N39 SINGLE NONE 7
BNB N39 C38 SINGLE NONE 8
BNB C38 O40 DOUBLE NONE 9
BNB C38 C35 SINGLE NONE 10
BNB C36 C35 DOUBLE NONE 11
BNB C36 C37 SINGLE NONE 12
BNB C35 C34 SINGLE NONE 13
BNB C37 C32 DOUBLE NONE 14
BNB C34 C33 DOUBLE NONE 15
BNB C32 C33 SINGLE NONE 16
BNB C32 N31 SINGLE NONE 17
BNB N31 C27 SINGLE NONE 18
BNB C27 N28 DOUBLE NONE 19
BNB C27 C26 SINGLE NONE 20
BNB O29 C26 DOUBLE NONE 21
BNB N28 C23 SINGLE NONE 22
BNB C26 N25 SINGLE NONE 23
BNB C23 C1 SINGLE NONE 24
BNB C23 C24 DOUBLE NONE 25
BNB N25 C24 SINGLE NONE 26
BNB N25 C30 SINGLE NONE 27
BNB C2 C1 DOUBLE NONE 28
BNB C2 C3 SINGLE NONE 29
BNB C1 C6 SINGLE NONE 30
BNB C3 C4 DOUBLE NONE 31
BNB C6 C8 SINGLE NONE 32
BNB C6 C5 DOUBLE NONE 33
BNB C4 C5 SINGLE NONE 34
BNB C5 N7 SINGLE NONE 35
BNB N7 C9 SINGLE NONE 36
BNB C9 O11 DOUBLE NONE 37
BNB C9 C10 SINGLE NONE 38
BNB C16 C10 SINGLE NONE 39
BNB C16 C15 DOUBLE NONE 40
BNB C10 C12 DOUBLE NONE 41
BNB C15 C14 SINGLE NONE 42
BNB C12 C13 SINGLE NONE 43
BNB C14 C13 DOUBLE NONE 44
BNB C14 N17 SINGLE NONE 45
BNB C22 C21 SINGLE NONE 46
BNB C22 N17 SINGLE NONE 47
BNB C21 C20 SINGLE NONE 48
BNB N17 C18 SINGLE NONE 49
BNB C20 C19 SINGLE NONE 50
BNB C18 C19 SINGLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BNB MurckoScaffold S1 scaffold 'O=C(Nc1cccc(-c2c[nH]c(=O)c(Nc3ccc(C(=O)N4CCNCC4)cc3)n2)c1)c1ccc(N2CCCCC2)cc1' InChI=1S/C33H35N7O3/c41-31(23-9-13-28(14-10-23)39-17-2-1-3-18-39)37-27-6-4-5-25(21-27)29-22-35-32(42)30(38-29)36-26-11-7-24(8-12-26)33(43)40-19-15-34-16-20-40/h4-14,21-22,34H,1-3,15-20H2,(H,35,42)(H,36,38)(H,37,41) GOTKEIDJNBKZSW-UHFFFAOYSA-N
BNB amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
BNB phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
BNB piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
BNB pyrazine F4 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BNB C1 S1 1
BNB C2 S1 1
BNB C3 S1 1
BNB C4 S1 1
BNB C5 S1 1
BNB C6 S1 1
BNB C9 S1 1
BNB C12 S1 1
BNB C19 S1 1
BNB C18 S1 1
BNB C20 S1 1
BNB C21 S1 1
BNB C22 S1 1
BNB C23 S1 1
BNB C16 S1 1
BNB C15 S1 1
BNB C24 S1 1
BNB N7 S1 1
BNB C10 S1 1
BNB O11 S1 1
BNB C13 S1 1
BNB C14 S1 1
BNB N17 S1 1
BNB N25 S1 1
BNB C26 S1 1
BNB C27 S1 1
BNB N28 S1 1
BNB O29 S1 1
BNB N31 S1 1
BNB C32 S1 1
BNB C33 S1 1
BNB C34 S1 1
BNB C35 S1 1
BNB C36 S1 1
BNB C37 S1 1
BNB C38 S1 1
BNB N39 S1 1
BNB O40 S1 1
BNB C41 S1 1
BNB C42 S1 1
BNB N43 S1 1
BNB C44 S1 1
BNB C45 S1 1
BNB N7 F1 1
BNB C9 F1 1
BNB O11 F1 1
BNB C10 F1 1
BNB N39 F1 2
BNB C38 F1 2
BNB O40 F1 2
BNB C35 F1 2
BNB C1 F2 1
BNB C2 F2 1
BNB C3 F2 1
BNB C4 F2 1
BNB C5 F2 1
BNB C6 F2 1
BNB C12 F2 2
BNB C10 F2 2
BNB C16 F2 2
BNB C15 F2 2
BNB C14 F2 2
BNB C13 F2 2
BNB C32 F2 3
BNB C37 F2 3
BNB C36 F2 3
BNB C35 F2 3
BNB C34 F2 3
BNB C33 F2 3
BNB N39 F3 1
BNB C41 F3 1
BNB C42 F3 1
BNB N43 F3 1
BNB C44 F3 1
BNB C45 F3 1
BNB C23 F4 1
BNB C24 F4 1
BNB N25 F4 1
BNB C26 F4 1
BNB C27 F4 1
BNB N28 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BNB
_pdbe_chem_comp_rdkit_properties.exactmw 619.327
_pdbe_chem_comp_rdkit_properties.amw 619.770
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 46
_pdbe_chem_comp_rdkit_properties.NumAtoms 87
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 326.933
_pdbe_chem_comp_rdkit_properties.tpsa 102.810
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.963
_pdbe_chem_comp_rdkit_properties.CrippenMR 177.927
_pdbe_chem_comp_rdkit_properties.chi0v 22.355
_pdbe_chem_comp_rdkit_properties.chi1v 12.137
_pdbe_chem_comp_rdkit_properties.chi2v 5.439
_pdbe_chem_comp_rdkit_properties.chi3v 5.439
_pdbe_chem_comp_rdkit_properties.chi4v 3.343
_pdbe_chem_comp_rdkit_properties.chi0n 63.355
_pdbe_chem_comp_rdkit_properties.chi1n 32.532
_pdbe_chem_comp_rdkit_properties.chi2n 5.439
_pdbe_chem_comp_rdkit_properties.chi3n 5.439
_pdbe_chem_comp_rdkit_properties.chi4n 3.343
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.960
_pdbe_chem_comp_rdkit_properties.kappa1 8.685
_pdbe_chem_comp_rdkit_properties.kappa2 13.578
_pdbe_chem_comp_rdkit_properties.kappa3 6.816
_pdbe_chem_comp_rdkit_properties.Phi 2.564
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BNB UniChem PDBe BNB
BNB UniChem PubChem 134812703
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BNB C1 0.397 -0.916 0.694 ETKDGv3 1
BNB C2 0.263 -2.244 0.847 ETKDGv3 2
BNB C3 1.440 -3.126 0.813 ETKDGv3 3
BNB C4 2.657 -2.613 0.629 ETKDGv3 4
BNB C5 2.849 -1.146 0.505 ETKDGv3 5
BNB C6 1.771 -0.321 0.569 ETKDGv3 6
BNB C8 1.955 1.179 0.552 ETKDGv3 7
BNB C9 5.334 -1.145 0.956 ETKDGv3 8
BNB C12 7.769 -0.966 1.251 ETKDGv3 9
BNB C19 12.909 -0.066 -0.079 ETKDGv3 10
BNB C18 11.776 -0.873 -0.734 ETKDGv3 11
BNB C20 13.041 1.369 -0.636 ETKDGv3 12
BNB C21 12.326 1.549 -1.981 ETKDGv3 13
BNB C22 10.834 1.207 -1.843 ETKDGv3 14
BNB C23 -0.829 -0.088 0.641 ETKDGv3 15
BNB C16 6.904 -0.463 -0.973 ETKDGv3 16
BNB C15 8.134 -0.204 -1.433 ETKDGv3 17
BNB C24 -1.049 0.751 -0.386 ETKDGv3 18
BNB N7 4.173 -0.625 0.287 ETKDGv3 19
BNB C10 6.696 -0.857 0.444 ETKDGv3 20
BNB O11 5.194 -1.827 2.009 ETKDGv3 21
BNB C13 9.125 -0.674 0.744 ETKDGv3 22
BNB C14 9.312 -0.314 -0.538 ETKDGv3 23
BNB N17 10.630 -0.003 -1.031 ETKDGv3 24
BNB N25 -2.247 1.545 -0.431 ETKDGv3 25
BNB C26 -3.217 1.391 0.617 ETKDGv3 26
BNB C27 -2.953 0.398 1.679 ETKDGv3 27
BNB N28 -1.825 -0.249 1.669 ETKDGv3 28
BNB O29 -4.251 2.113 0.647 ETKDGv3 29
BNB C30 -2.503 2.434 -1.564 ETKDGv3 30
BNB N31 -3.875 0.181 2.756 ETKDGv3 31
BNB C32 -5.300 0.097 2.585 ETKDGv3 32
BNB C33 -5.893 -0.340 1.295 ETKDGv3 33
BNB C34 -7.221 -0.427 1.156 ETKDGv3 34
BNB C35 -8.120 -0.091 2.288 ETKDGv3 35
BNB C36 -7.579 0.263 3.468 ETKDGv3 36
BNB C37 -6.112 0.356 3.622 ETKDGv3 37
BNB C38 -9.590 -0.187 2.126 ETKDGv3 38
BNB N39 -10.204 -0.055 0.832 ETKDGv3 39
BNB O40 -10.314 -0.415 3.133 ETKDGv3 40
BNB C41 -11.346 -0.913 0.494 ETKDGv3 41
BNB C42 -11.729 -0.756 -0.980 ETKDGv3 42
BNB N43 -10.501 -0.614 -1.781 ETKDGv3 43
BNB C44 -9.832 0.680 -1.514 ETKDGv3 44
BNB C45 -9.888 1.093 -0.027 ETKDGv3 45
BNB C46 -10.802 -0.750 -3.214 ETKDGv3 46
BNB H1 -0.718 -2.695 0.947 ETKDGv3 47
BNB H2 1.311 -4.197 0.906 ETKDGv3 48
BNB H3 3.506 -3.280 0.565 ETKDGv3 49
BNB H4 1.109 1.696 1.048 ETKDGv3 50
BNB H5 2.039 1.535 -0.496 ETKDGv3 51
BNB H6 2.866 1.474 1.115 ETKDGv3 52
BNB H7 7.658 -1.250 2.291 ETKDGv3 53
BNB H8 13.865 -0.613 -0.228 ETKDGv3 54
BNB H9 12.727 -0.011 1.017 ETKDGv3 55
BNB H10 11.491 -1.724 -0.079 ETKDGv3 56
BNB H11 12.144 -1.313 -1.687 ETKDGv3 57
BNB H12 12.608 2.087 0.095 ETKDGv3 58
BNB H13 14.116 1.625 -0.755 ETKDGv3 59
BNB H14 12.795 0.888 -2.742 ETKDGv3 60
BNB H15 12.436 2.599 -2.326 ETKDGv3 61
BNB H16 10.397 1.064 -2.854 ETKDGv3 62
BNB H17 10.320 2.064 -1.355 ETKDGv3 63
BNB H18 6.068 -0.407 -1.658 ETKDGv3 64
BNB H19 8.264 0.065 -2.473 ETKDGv3 65
BNB H20 -0.324 0.827 -1.188 ETKDGv3 66
BNB H21 4.289 0.205 -0.335 ETKDGv3 67
BNB H22 9.960 -0.730 1.430 ETKDGv3 68
BNB H23 -2.850 3.424 -1.200 ETKDGv3 69
BNB H24 -3.282 1.989 -2.217 ETKDGv3 70
BNB H25 -1.580 2.595 -2.162 ETKDGv3 71
BNB H26 -3.477 -0.002 3.706 ETKDGv3 72
BNB H27 -5.255 -0.613 0.464 ETKDGv3 73
BNB H28 -7.633 -0.767 0.214 ETKDGv3 74
BNB H29 -8.206 0.503 4.318 ETKDGv3 75
BNB H30 -5.702 0.654 4.578 ETKDGv3 76
BNB H31 -11.065 -1.974 0.677 ETKDGv3 77
BNB H32 -12.215 -0.661 1.139 ETKDGv3 78
BNB H33 -12.387 0.134 -1.109 ETKDGv3 79
BNB H34 -12.302 -1.657 -1.292 ETKDGv3 80
BNB H36 -10.281 1.499 -2.122 ETKDGv3 81
BNB H37 -8.765 0.590 -1.816 ETKDGv3 82
BNB H38 -8.929 1.570 0.265 ETKDGv3 83
BNB H39 -10.683 1.858 0.108 ETKDGv3 84
BNB H40 -9.875 -0.619 -3.814 ETKDGv3 85
BNB H41 -11.191 -1.769 -3.425 ETKDGv3 86
BNB H42 -11.556 0.001 -3.540 ETKDGv3 87
#