data_BNW
#
_chem_comp.id BNW
_chem_comp.name "UDP-N-acetyl-muramic acid-4'phosphate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H32 N3 O22 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-11
_chem_comp.pdbx_modified_date 2018-04-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 759.396
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BNW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6EPI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BNW P P1 P 0 1 N N N N N N 29.741 30.833 8.090 5.001 -3.487 1.327 P BNW 1
BNW O1 O1 O 0 1 N N N N N N 25.804 27.787 4.671 2.153 1.713 0.488 O1 BNW 2
BNW O3 O2 O 0 1 N N N N N N 29.193 30.481 4.169 4.717 -1.064 -1.386 O3 BNW 3
BNW O4 O3 O 0 1 N N N N N N 29.057 29.821 7.040 3.945 -2.298 1.076 O4 BNW 4
BNW C1 C1 C 0 1 N N R N N N 25.713 29.193 4.626 3.562 1.843 0.692 C1 BNW 5
BNW C2 C2 C 0 1 N N R N N N 26.946 29.750 3.897 4.309 1.121 -0.433 C2 BNW 6
BNW C3 C3 C 0 1 N N R N N N 28.192 29.656 4.780 3.967 -0.371 -0.386 C3 BNW 7
BNW C4 C4 C 0 1 N N S N N N 27.944 30.141 6.203 4.326 -0.923 0.997 C4 BNW 8
BNW C5 C5 C 0 1 N N R N N N 26.700 29.481 6.792 3.579 -0.122 2.067 C5 BNW 9
BNW C6 C6 C 0 1 N N N N N N 26.315 30.030 8.150 3.978 -0.628 3.454 C6 BNW 10
BNW O5 O4 O 0 1 N N N N N N 25.575 29.722 5.933 3.917 1.261 1.948 O5 BNW 11
BNW O6 O5 O 0 1 N N N N N N 26.041 31.422 8.061 3.195 0.038 4.447 O6 BNW 12
BNW N2 N1 N 0 1 N N N N N N 27.191 29.124 2.613 3.901 1.676 -1.726 N2 BNW 13
BNW C7 C7 C 0 1 N N N N N N 26.496 29.250 1.458 4.533 2.757 -2.225 C7 BNW 14
BNW O7 O6 O 0 1 N N N N N N 26.740 28.546 0.485 5.440 3.270 -1.603 O7 BNW 15
BNW C8 C8 C 0 1 N N N N N N 25.418 30.299 1.417 4.114 3.328 -3.555 C8 BNW 16
BNW PA P2 P 0 1 N N N N N N 23.445 26.413 1.746 -1.862 2.748 1.202 PA BNW 17
BNW PB P3 P 0 1 N N N N N N 24.559 26.920 4.350 1.092 2.824 0.971 PB BNW 18
BNW O1A O7 O 0 1 N N N N N N 24.282 25.842 0.637 -1.975 4.221 1.118 O1A BNW 19
BNW O1B O8 O 0 1 N N N N N N 24.899 25.455 4.713 1.268 3.079 2.418 O1B BNW 20
BNW C1D C9 C 0 1 N N R N N N 19.868 22.890 0.952 -6.271 -0.435 -0.984 C1D BNW 21
BNW C1E C10 C 0 1 N N N N N N 31.006 29.027 3.320 4.930 -1.388 -3.753 C1E BNW 22
BNW O1E O9 O 0 1 N N N N N N 30.072 28.640 2.489 6.122 -1.308 -3.569 O1E BNW 23
BNW N1U N2 N 0 1 N N N N N N 20.831 22.470 -0.108 -6.656 -1.704 -0.362 N1U BNW 24
BNW O2A O10 O 0 1 N N N N N N 22.563 27.582 1.235 -2.072 2.279 2.728 O2A BNW 25
BNW O2B O11 O 0 1 N N N N N N 23.340 27.408 5.079 1.334 4.189 0.152 O2B BNW 26
BNW C2D C11 C 0 1 N N R N N N 19.987 22.100 2.266 -7.405 0.604 -0.833 C2D BNW 27
BNW O2D O12 O 0 1 N N N N N N 18.724 21.837 2.834 -8.184 0.671 -2.029 O2D BNW 28
BNW C2E C12 C 0 1 N N R N N N 30.560 30.072 4.333 3.982 -1.331 -2.582 C2E BNW 29
BNW O2E O13 O 0 1 N N N N N N 32.143 28.597 3.326 4.451 -1.528 -4.998 O2E BNW 30
BNW C2U C13 C 0 1 N N N N N N 20.429 21.498 -1.017 -6.752 -2.814 -1.117 C2U BNW 31
BNW O2U O14 O 0 1 N N N N N N 19.322 20.983 -0.992 -6.517 -2.751 -2.308 O2U BNW 32
BNW O3A O15 O 0 1 N N N N N N 24.366 27.020 2.822 -0.403 2.292 0.697 O3A BNW 33
BNW C3D C14 C 0 1 N N S N N N 20.860 23.030 3.116 -6.662 1.938 -0.595 C3D BNW 34
BNW O3D O16 O 0 1 N N N N N N 20.645 22.839 4.505 -6.961 2.869 -1.637 O3D BNW 35
BNW C3E C15 C 0 1 N N N N N N 31.418 31.317 4.189 3.257 -2.672 -2.448 C3E BNW 36
BNW N3U N3 N 0 1 N N N N N N 21.373 21.153 -1.960 -7.104 -3.993 -0.571 N3U BNW 37
BNW C4D C16 C 0 1 N N R N N N 20.343 24.382 2.678 -5.168 1.547 -0.630 C4D BNW 38
BNW O4D O17 O 0 1 N N N N N N 20.117 24.244 1.267 -5.145 0.144 -0.289 O4D BNW 39
BNW C4U C17 C 0 1 N N N N N N 22.656 21.661 -2.092 -7.367 -4.080 0.748 C4U BNW 40
BNW O4U O18 O 0 1 N N N N N N 23.390 21.245 -3.012 -7.686 -5.147 1.243 O4U BNW 41
BNW C5D C18 C 0 1 N N N N N N 21.247 25.559 2.938 -4.381 2.359 0.401 C5D BNW 42
BNW O5D O19 O 0 1 N N N N N N 22.552 25.292 2.385 -2.988 2.069 0.273 O5D BNW 43
BNW C5U C19 C 0 1 N N N N N N 23.003 22.653 -1.119 -7.270 -2.920 1.554 C5U BNW 44
BNW C6U C20 C 0 1 N N N N N N 22.088 23.018 -0.172 -6.910 -1.751 0.982 C6U BNW 45
BNW O1P O20 O 0 1 N N N N N N 28.887 32.073 8.160 4.211 -4.881 1.488 O1P BNW 46
BNW O2P O21 O 0 1 N N N N N N 29.717 30.041 9.368 6.009 -3.583 0.075 O2P BNW 47
BNW O3P O22 O 0 1 N N N N N N 31.124 31.039 7.531 5.772 -3.211 2.560 O3P BNW 48
BNW H1 H1 H 0 1 N N N N N N 24.829 29.474 4.035 3.834 2.898 0.690 H1 BNW 49
BNW H2 H2 H 0 1 N N N N N N 26.757 30.819 3.722 5.382 1.254 -0.301 H2 BNW 50
BNW H3 H3 H 0 1 N N N N N N 28.529 28.609 4.812 2.902 -0.508 -0.569 H3 BNW 51
BNW H4 H4 H 0 1 N N N N N N 27.789 31.230 6.183 5.400 -0.832 1.158 H4 BNW 52
BNW H5 H5 H 0 1 N N N N N N 26.881 28.400 6.882 2.505 -0.247 1.929 H5 BNW 53
BNW H6 H6 H 0 1 N N N N N N 25.418 29.506 8.512 3.803 -1.702 3.514 H6 BNW 54
BNW H7 H7 H 0 1 N N N N N N 27.144 29.868 8.855 5.035 -0.422 3.626 H7 BNW 55
BNW H8 H8 H 0 1 N N N N N N 25.801 31.753 8.918 3.395 -0.234 5.353 H8 BNW 56
BNW H9 H9 H 0 1 N N N N N N 27.983 28.515 2.575 3.176 1.266 -2.223 H9 BNW 57
BNW H10 H10 H 0 1 N N N N N N 24.943 30.299 0.425 3.340 4.079 -3.400 H10 BNW 58
BNW H11 H11 H 0 1 N N N N N N 24.662 30.078 2.185 4.975 3.788 -4.040 H11 BNW 59
BNW H12 H12 H 0 1 N N N N N N 25.861 31.287 1.611 3.725 2.530 -4.187 H12 BNW 60
BNW H13 H13 H 0 1 N N N N N N 18.843 22.774 0.570 -6.031 -0.585 -2.036 H13 BNW 61
BNW H14 H14 H 0 1 N N N N N N 22.721 27.717 0.308 -2.011 1.323 2.858 H14 BNW 62
BNW H15 H15 H 0 1 N N N N N N 23.003 26.714 5.634 1.235 4.096 -0.805 H15 BNW 63
BNW H16 H16 H 0 1 N N N N N N 20.534 21.165 2.076 -8.036 0.358 0.020 H16 BNW 64
BNW H17 H17 H 0 1 N N N N N N 18.835 21.349 3.642 -8.910 1.308 -1.990 H17 BNW 65
BNW H18 H18 H 0 1 N N N N N N 30.705 29.662 5.344 3.252 -0.539 -2.745 H18 BNW 66
BNW H19 H19 H 0 1 N N N N N N 32.239 27.946 2.641 5.098 -1.559 -5.717 H19 BNW 67
BNW H20 H20 H 0 1 N N N N N N 21.919 22.914 2.843 -6.928 2.354 0.376 H20 BNW 68
BNW H21 H21 H 0 1 N N N N N N 21.202 23.431 4.996 -7.897 3.103 -1.699 H21 BNW 69
BNW H22 H22 H 0 1 N N N N N N 31.095 32.072 4.921 3.979 -3.452 -2.206 H22 BNW 70
BNW H23 H23 H 0 1 N N N N N N 32.472 31.059 4.369 2.515 -2.606 -1.653 H23 BNW 71
BNW H24 H24 H 0 1 N N N N N N 31.308 31.722 3.172 2.763 -2.914 -3.388 H24 BNW 72
BNW H25 H25 H 0 1 N N N N N N 21.101 20.457 -2.625 -7.169 -4.784 -1.130 H25 BNW 73
BNW H26 H26 H 0 1 N N N N N N 19.383 24.564 3.183 -4.758 1.703 -1.628 H26 BNW 74
BNW H27 H27 H 0 1 N N N N N N 21.334 25.722 4.022 -4.548 3.423 0.230 H27 BNW 75
BNW H28 H28 H 0 1 N N N N N N 20.825 26.458 2.465 -4.717 2.096 1.404 H28 BNW 76
BNW H29 H29 H 0 1 N N N N N N 23.982 23.110 -1.134 -7.477 -2.970 2.613 H29 BNW 77
BNW H30 H30 H 0 1 N N N N N N 22.365 23.767 0.555 -6.830 -0.856 1.581 H30 BNW 78
BNW H31 H31 H 0 1 N N N N N N 29.378 32.815 7.827 4.786 -5.643 1.642 H31 BNW 79
BNW H32 H32 H 0 1 N N N N N N 30.604 29.801 9.609 5.582 -3.842 -0.754 H32 BNW 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BNW O4U C4U DOUB N N 1
BNW C4U N3U SING N N 2
BNW C4U C5U SING N N 3
BNW N3U C2U SING N N 4
BNW C5U C6U DOUB N N 5
BNW C2U O2U DOUB N N 6
BNW C2U N1U SING N N 7
BNW C6U N1U SING N N 8
BNW N1U C1D SING N N 9
BNW O7 C7 DOUB N N 10
BNW O1A PA DOUB N N 11
BNW C1D O4D SING N N 12
BNW C1D C2D SING N N 13
BNW O2A PA SING N N 14
BNW O4D C4D SING N N 15
BNW C8 C7 SING N N 16
BNW C7 N2 SING N N 17
BNW PA O5D SING N N 18
BNW PA O3A SING N N 19
BNW C2D O2D SING N N 20
BNW C2D C3D SING N N 21
BNW O5D C5D SING N N 22
BNW O1E C1E DOUB N N 23
BNW N2 C2 SING N N 24
BNW C4D C5D SING N N 25
BNW C4D C3D SING N N 26
BNW O3A PB SING N N 27
BNW C3D O3D SING N N 28
BNW C1E O2E SING N N 29
BNW C1E C2E SING N N 30
BNW C2 C1 SING N N 31
BNW C2 C3 SING N N 32
BNW O3 C2E SING N N 33
BNW O3 C3 SING N N 34
BNW C3E C2E SING N N 35
BNW PB O1 SING N N 36
BNW PB O1B DOUB N N 37
BNW PB O2B SING N N 38
BNW C1 O1 SING N N 39
BNW C1 O5 SING N N 40
BNW C3 C4 SING N N 41
BNW O5 C5 SING N N 42
BNW C4 C5 SING N N 43
BNW C4 O4 SING N N 44
BNW C5 C6 SING N N 45
BNW O4 P SING N N 46
BNW O3P P DOUB N N 47
BNW O6 C6 SING N N 48
BNW P O1P SING N N 49
BNW P O2P SING N N 50
BNW C1 H1 SING N N 51
BNW C2 H2 SING N N 52
BNW C3 H3 SING N N 53
BNW C4 H4 SING N N 54
BNW C5 H5 SING N N 55
BNW C6 H6 SING N N 56
BNW C6 H7 SING N N 57
BNW O6 H8 SING N N 58
BNW N2 H9 SING N N 59
BNW C8 H10 SING N N 60
BNW C8 H11 SING N N 61
BNW C8 H12 SING N N 62
BNW C1D H13 SING N N 63
BNW O2A H14 SING N N 64
BNW O2B H15 SING N N 65
BNW C2D H16 SING N N 66
BNW O2D H17 SING N N 67
BNW C2E H18 SING N N 68
BNW O2E H19 SING N N 69
BNW C3D H20 SING N N 70
BNW O3D H21 SING N N 71
BNW C3E H22 SING N N 72
BNW C3E H23 SING N N 73
BNW C3E H24 SING N N 74
BNW N3U H25 SING N N 75
BNW C4D H26 SING N N 76
BNW C5D H27 SING N N 77
BNW C5D H28 SING N N 78
BNW C5U H29 SING N N 79
BNW C6U H30 SING N N 80
BNW O1P H31 SING N N 81
BNW O2P H32 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BNW InChI InChI 1.03 InChI=1S/C20H32N3O22P3/c1-7(18(29)30)40-16-12(21-8(2)25)19(42-9(5-24)15(16)43-46(32,33)34)44-48(37,38)45-47(35,36)39-6-10-13(27)14(28)17(41-10)23-4-3-11(26)22-20(23)31/h3-4,7,9-10,12-17,19,24,27-28H,5-6H2,1-2H3,(H,21,25)(H,29,30)(H,35,36)(H,37,38)(H,22,26,31)(H2,32,33,34)/t7-,9-,10-,12-,13-,14-,15-,16-,17-,19-/m1/s1
BNW InChIKey InChI 1.03 YABLFTRLTDPKPE-MQTLHLSBSA-N
BNW SMILES_CANONICAL CACTVS 3.385 C[C@@H](O[C@@H]1[C@@H](NC(C)=O)[C@H](O[C@H](CO)[C@H]1O[P](O)(O)=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)C(O)=O
BNW SMILES CACTVS 3.385 C[CH](O[CH]1[CH](NC(C)=O)[CH](O[CH](CO)[CH]1O[P](O)(O)=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)C(O)=O
BNW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1OP(=O)(O)O)CO)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C
BNW SMILES "OpenEye OEToolkits" 2.0.6 CC(C(=O)O)OC1C(C(OC(C1OP(=O)(O)O)CO)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C
#
_pdbx_chem_comp_identifier.comp_id BNW
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"(2~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-6-(hydroxymethyl)-5-phosphonooxy-oxan-4-yl]oxypropanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BNW 'Create component' 2017-10-11 EBI
BNW 'Initial release' 2018-05-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BNW P P 5.104 -5.053 1
BNW O1 O 11.600 -2.803 2
BNW O3 O 9.002 -7.302 3
BNW O4 O 6.404 -5.803 4
BNW C1 C 10.301 -3.553 5
BNW C2 C 10.301 -5.053 6
BNW C3 C 9.002 -5.803 7
BNW C4 C 7.702 -5.053 8
BNW C5 C 7.702 -3.553 9
BNW C6 C 6.404 -2.803 10
BNW O5 O 9.002 -2.803 11
BNW O6 O 6.404 -1.302 12
BNW N2 N 11.600 -5.803 13
BNW C7 C 12.899 -5.053 14
BNW O7 O 12.899 -3.553 15
BNW C8 C 14.198 -5.803 16
BNW PA P 12.899 0.948 17
BNW PB P 11.600 -1.302 18
BNW O1A O 12.149 2.247 19
BNW O1B O 13.100 -1.302 20
BNW C1D C 17.121 5.751 21
BNW C1E C 7.702 -9.553 22
BNW O1E O 6.404 -10.303 23
BNW N1U N 17.731 7.122 24
BNW O2A O 13.649 -0.351 25
BNW O2B O 10.100 -1.302 26
BNW C2D C 17.871 4.452 27
BNW O2D O 19.363 4.295 28
BNW C2E C 7.702 -8.053 29
BNW O2E O 9.002 -10.303 30
BNW C2U C 19.223 7.278 31
BNW O2U O 20.104 6.065 32
BNW O3A O 11.600 0.198 33
BNW C3D C 16.867 3.337 34
BNW O3D O 17.179 1.870 35
BNW C3E C 6.404 -7.302 36
BNW N3U N 19.833 8.649 37
BNW C4D C 15.497 3.947 38
BNW O4D O 15.654 5.439 39
BNW C4U C 18.951 9.862 40
BNW O4U O 19.561 11.232 41
BNW C5D C 14.198 3.197 42
BNW O5D O 14.198 1.698 43
BNW C5U C 17.459 9.705 44
BNW C6U C 16.849 8.335 45
BNW O1P O 4.354 -6.351 46
BNW O2P O 5.854 -3.753 47
BNW O3P O 3.805 -4.303 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BNW O4U C4U DOUBLE NONE 1
BNW C4U N3U SINGLE NONE 2
BNW C4U C5U SINGLE NONE 3
BNW N3U C2U SINGLE NONE 4
BNW C5U C6U DOUBLE NONE 5
BNW C2U O2U DOUBLE NONE 6
BNW C2U N1U SINGLE NONE 7
BNW C6U N1U SINGLE NONE 8
BNW C1D N1U SINGLE BEGINWEDGE 9
BNW O7 C7 DOUBLE NONE 10
BNW O1A PA DOUBLE NONE 11
BNW C1D O4D SINGLE NONE 12
BNW C1D C2D SINGLE NONE 13
BNW PA O2A SINGLE BEGINDASH 14
BNW O4D C4D SINGLE NONE 15
BNW C8 C7 SINGLE NONE 16
BNW C7 N2 SINGLE NONE 17
BNW PA O5D SINGLE NONE 18
BNW PA O3A SINGLE NONE 19
BNW C2D O2D SINGLE BEGINDASH 20
BNW C2D C3D SINGLE NONE 21
BNW O5D C5D SINGLE NONE 22
BNW O1E C1E DOUBLE NONE 23
BNW C2 N2 SINGLE BEGINDASH 24
BNW C4D C5D SINGLE BEGINWEDGE 25
BNW C4D C3D SINGLE NONE 26
BNW O3A PB SINGLE NONE 27
BNW C3D O3D SINGLE BEGINDASH 28
BNW C1E O2E SINGLE NONE 29
BNW C1E C2E SINGLE NONE 30
BNW C2 C1 SINGLE NONE 31
BNW C2 C3 SINGLE NONE 32
BNW O3 C2E SINGLE NONE 33
BNW C3 O3 SINGLE BEGINWEDGE 34
BNW C2E C3E SINGLE BEGINWEDGE 35
BNW PB O1 SINGLE NONE 36
BNW PB O1B DOUBLE NONE 37
BNW PB O2B SINGLE BEGINDASH 38
BNW C1 O1 SINGLE BEGINDASH 39
BNW C1 O5 SINGLE NONE 40
BNW C3 C4 SINGLE NONE 41
BNW O5 C5 SINGLE NONE 42
BNW C4 C5 SINGLE NONE 43
BNW C4 O4 SINGLE BEGINDASH 44
BNW C5 C6 SINGLE BEGINWEDGE 45
BNW O4 P SINGLE NONE 46
BNW O3P P DOUBLE NONE 47
BNW O6 C6 SINGLE NONE 48
BNW P O1P SINGLE NONE 49
BNW P O2P SINGLE NONE 50
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BNW MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]3CCCCO3)O2)c(=O)[nH]1' InChI=1S/C14H22N2O9P2/c17-11-6-7-16(14(18)15-11)12-5-4-10(23-12)9-22-26(19)25-27(20)24-13-3-1-2-8-21-13/h6-7,10,12-13,26-27H,1-5,8-9H2,(H,15,17,18)/t10-,12+,13+/m0/s1 AKKVBKIXAFLMCT-CYZMBNFOSA-N
BNW amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
BNW phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
BNW pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
BNW pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
BNW ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BNW O1 S1 1
BNW C1 S1 1
BNW C2 S1 1
BNW C3 S1 1
BNW C4 S1 1
BNW C5 S1 1
BNW O5 S1 1
BNW PA S1 1
BNW PB S1 1
BNW O1A S1 1
BNW O1B S1 1
BNW C1D S1 1
BNW N1U S1 1
BNW C2D S1 1
BNW C2U S1 1
BNW O2U S1 1
BNW O3A S1 1
BNW C3D S1 1
BNW N3U S1 1
BNW C4D S1 1
BNW O4D S1 1
BNW C4U S1 1
BNW O4U S1 1
BNW C5D S1 1
BNW O5D S1 1
BNW C5U S1 1
BNW C6U S1 1
BNW N2 F1 1
BNW C7 F1 1
BNW O7 F1 1
BNW C8 F1 1
BNW O1 F2 1
BNW PB F2 1
BNW O1B F2 1
BNW O3A F2 1
BNW O2B F2 1
BNW O4 F2 2
BNW P F2 2
BNW O3P F2 2
BNW O1P F2 2
BNW O2P F2 2
BNW O2A F2 3
BNW PA F2 3
BNW O1A F2 3
BNW O5D F2 3
BNW O3A F2 3
BNW C4 F3 1
BNW C5 F3 1
BNW O5 F3 1
BNW C1 F3 1
BNW C2 F3 1
BNW C3 F3 1
BNW O1 F3 1
BNW C5U F4 1
BNW C4U F4 1
BNW N3U F4 1
BNW C2U F4 1
BNW N1U F4 1
BNW C6U F4 1
BNW C2D F5 1
BNW C3D F5 1
BNW C4D F5 1
BNW O4D F5 1
BNW C1D F5 1
BNW C5D F5 1
BNW O5D F5 1
BNW O3D F5 1
BNW O2D F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BNW
_pdbe_chem_comp_rdkit_properties.exactmw 759.069
_pdbe_chem_comp_rdkit_properties.amw 759.397
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 25
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 24
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 23
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 28
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.700
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 12
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 312.670
_pdbe_chem_comp_rdkit_properties.tpsa 378.690
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.236
_pdbe_chem_comp_rdkit_properties.CrippenMR 147.474
_pdbe_chem_comp_rdkit_properties.chi0v 24.348
_pdbe_chem_comp_rdkit_properties.chi1v 15.108
_pdbe_chem_comp_rdkit_properties.chi2v 6.941
_pdbe_chem_comp_rdkit_properties.chi3v 6.941
_pdbe_chem_comp_rdkit_properties.chi4v 4.821
_pdbe_chem_comp_rdkit_properties.chi0n 53.665
_pdbe_chem_comp_rdkit_properties.chi1n 25.887
_pdbe_chem_comp_rdkit_properties.chi2n 4.231
_pdbe_chem_comp_rdkit_properties.chi3n 4.231
_pdbe_chem_comp_rdkit_properties.chi4n 2.664
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.250
_pdbe_chem_comp_rdkit_properties.kappa1 14.405
_pdbe_chem_comp_rdkit_properties.kappa2 15.748
_pdbe_chem_comp_rdkit_properties.kappa3 10.625
_pdbe_chem_comp_rdkit_properties.Phi 4.726
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BNW UniChem PDBe BNW
BNW UniChem PubChem 133054013
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BNW P -6.643 0.792 1.410 ETKDGv3 1
BNW O1 -1.542 -2.697 0.457 ETKDGv3 2
BNW O3 -3.725 0.078 -1.947 ETKDGv3 3
BNW O4 -5.427 -0.398 1.249 ETKDGv3 4
BNW C1 -2.641 -2.098 -0.202 ETKDGv3 5
BNW C2 -2.634 -0.579 0.092 ETKDGv3 6
BNW C3 -3.871 0.088 -0.534 ETKDGv3 7
BNW C4 -5.160 -0.660 -0.119 ETKDGv3 8
BNW C5 -5.009 -2.195 -0.288 ETKDGv3 9
BNW C6 -5.203 -2.706 -1.735 ETKDGv3 10
BNW O5 -3.820 -2.698 0.310 ETKDGv3 11
BNW O6 -6.517 -2.475 -2.170 ETKDGv3 12
BNW N2 -2.582 -0.326 1.539 ETKDGv3 13
BNW C7 -2.182 0.939 2.083 ETKDGv3 14
BNW O7 -1.813 1.875 1.323 ETKDGv3 15
BNW C8 -2.165 1.139 3.563 ETKDGv3 16
BNW PA 1.253 -1.635 1.379 ETKDGv3 17
BNW PB -0.206 -2.859 -0.600 ETKDGv3 18
BNW O1A 0.267 -1.888 2.498 ETKDGv3 19
BNW O1B -0.364 -4.142 -1.383 ETKDGv3 20
BNW C1D 6.852 0.105 0.688 ETKDGv3 21
BNW C1E -3.297 2.361 -2.525 ETKDGv3 22
BNW O1E -2.089 2.152 -2.821 ETKDGv3 23
BNW N1U 7.266 0.626 -0.625 ETKDGv3 24
BNW O2A 0.851 -0.186 0.597 ETKDGv3 25
BNW O2B -0.109 -1.567 -1.693 ETKDGv3 26
BNW C2D 6.034 1.130 1.451 ETKDGv3 27
BNW O2D 6.867 2.013 2.158 ETKDGv3 28
BNW C2E -4.288 1.233 -2.544 ETKDGv3 29
BNW O2E -3.719 3.647 -2.203 ETKDGv3 30
BNW C2U 6.351 0.700 -1.741 ETKDGv3 31
BNW O2U 5.163 0.296 -1.633 ETKDGv3 32
BNW O3A 1.237 -2.950 0.296 ETKDGv3 33
BNW C3D 5.203 0.261 2.363 ETKDGv3 34
BNW O3D 5.854 0.073 3.594 ETKDGv3 35
BNW C3E -4.665 0.902 -3.985 ETKDGv3 36
BNW N3U 6.799 1.246 -2.984 ETKDGv3 37
BNW C4D 5.127 -1.070 1.594 ETKDGv3 38
BNW O4D 6.073 -1.060 0.542 ETKDGv3 39
BNW C4U 8.134 1.740 -3.091 ETKDGv3 40
BNW O4U 8.545 2.223 -4.178 ETKDGv3 41
BNW C5D 3.732 -1.311 1.010 ETKDGv3 42
BNW O5D 2.809 -1.487 2.059 ETKDGv3 43
BNW C5U 9.024 1.686 -1.924 ETKDGv3 44
BNW C6U 8.598 1.164 -0.770 ETKDGv3 45
BNW O1P -6.257 2.172 0.508 ETKDGv3 46
BNW O2P -6.783 1.215 3.041 ETKDGv3 47
BNW O3P -7.965 0.235 0.931 ETKDGv3 48
BNW H1 -2.600 -2.268 -1.302 ETKDGv3 49
BNW H2 -1.729 -0.137 -0.374 ETKDGv3 50
BNW H3 -3.911 1.129 -0.139 ETKDGv3 51
BNW H4 -5.993 -0.339 -0.788 ETKDGv3 52
BNW H5 -5.846 -2.646 0.290 ETKDGv3 53
BNW H6 -4.975 -3.795 -1.777 ETKDGv3 54
BNW H7 -4.517 -2.204 -2.442 ETKDGv3 55
BNW H8 -7.086 -3.166 -1.741 ETKDGv3 56
BNW H9 -2.813 -1.097 2.207 ETKDGv3 57
BNW H10 -3.125 0.793 3.998 ETKDGv3 58
BNW H11 -2.027 2.213 3.809 ETKDGv3 59
BNW H12 -1.330 0.555 4.004 ETKDGv3 60
BNW H13 7.752 -0.171 1.287 ETKDGv3 61
BNW H14 0.933 0.510 1.297 ETKDGv3 62
BNW H15 0.758 -1.691 -2.155 ETKDGv3 63
BNW H16 5.369 1.692 0.754 ETKDGv3 64
BNW H17 6.279 2.732 2.507 ETKDGv3 65
BNW H18 -5.225 1.554 -2.032 ETKDGv3 66
BNW H19 -3.066 4.421 -2.191 ETKDGv3 67
BNW H20 4.205 0.733 2.528 ETKDGv3 68
BNW H21 5.186 -0.332 4.207 ETKDGv3 69
BNW H22 -5.109 1.790 -4.482 ETKDGv3 70
BNW H23 -3.770 0.573 -4.557 ETKDGv3 71
BNW H24 -5.413 0.081 -3.996 ETKDGv3 72
BNW H25 6.152 1.292 -3.803 ETKDGv3 73
BNW H26 5.369 -1.921 2.270 ETKDGv3 74
BNW H27 3.774 -2.228 0.379 ETKDGv3 75
BNW H28 3.460 -0.439 0.371 ETKDGv3 76
BNW H29 10.031 2.076 -1.999 ETKDGv3 77
BNW H30 9.280 1.148 0.072 ETKDGv3 78
BNW H31 -5.516 2.600 1.005 ETKDGv3 79
BNW H32 -5.861 1.440 3.323 ETKDGv3 80
#