data_BO2
#
_chem_comp.id BO2
_chem_comp.name N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H25 B N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms BORTEZOMIB
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-01-06
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 384.237
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BO2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2F16
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BO2 N1 N1 N 0 1 Y N N N N N 62.634 -135.350 34.666 -3.232 2.476 -0.644 N1 BO2 1
BO2 C2 C2 C 0 1 Y N N N N N 62.377 -134.360 35.574 -3.442 1.487 0.220 C2 BO2 2
BO2 C3 C3 C 0 1 Y N N N N N 62.689 -133.030 35.200 -4.685 1.361 0.841 C3 BO2 3
BO2 N4 N4 N 0 1 Y N N N N N 63.218 -132.770 33.968 -5.649 2.221 0.564 N4 BO2 4
BO2 C5 C5 C 0 1 Y N N N N N 63.470 -133.760 33.061 -5.436 3.198 -0.300 C5 BO2 5
BO2 C6 C6 C 0 1 Y N N N N N 63.168 -135.090 33.419 -4.201 3.326 -0.919 C6 BO2 6
BO2 C7 C7 C 0 1 N N N N N N 61.800 -134.740 36.929 -2.358 0.526 0.528 C7 BO2 7
BO2 O8 O8 O 0 1 N N N N N N 61.283 -133.830 37.577 -2.550 -0.374 1.322 O8 BO2 8
BO2 N9 N9 N 0 1 N N N N N N 61.877 -136.010 37.437 -1.158 0.649 -0.073 N9 BO2 9
BO2 C10 C10 C 0 1 N N S N N N 61.352 -136.240 38.799 -0.085 -0.301 0.231 C10 BO2 10
BO2 C11 C11 C 0 1 N N N N N N 60.559 -137.570 38.857 -0.236 -1.541 -0.653 C11 BO2 11
BO2 C12 C12 C 0 1 Y N N N N N 59.202 -137.390 38.165 -1.515 -2.256 -0.301 C12 BO2 12
BO2 C13 C13 C 0 1 Y N N N N N 58.969 -137.980 36.877 -1.511 -3.240 0.670 C13 BO2 13
BO2 C14 C14 C 0 1 Y N N N N N 57.704 -137.810 36.223 -2.684 -3.894 0.997 C14 BO2 14
BO2 C15 C15 C 0 1 Y N N N N N 56.663 -137.060 36.847 -3.860 -3.569 0.346 C15 BO2 15
BO2 C16 C16 C 0 1 Y N N N N N 56.887 -136.480 38.129 -3.863 -2.589 -0.629 C16 BO2 16
BO2 C17 C17 C 0 1 Y N N N N N 58.153 -136.640 38.789 -2.690 -1.933 -0.952 C17 BO2 17
BO2 C18 C18 C 0 1 N N N N N N 62.559 -136.270 39.740 1.250 0.346 -0.035 C18 BO2 18
BO2 O19 O19 O 0 1 N N N N N N 63.694 -136.180 39.233 1.300 1.488 -0.439 O19 BO2 19
BO2 N20 N20 N 0 1 N N N N N N 62.375 -136.400 41.088 2.388 -0.345 0.175 N20 BO2 20
BO2 C21 C21 C 0 1 N N R N N N 63.560 -136.420 41.957 3.685 0.284 -0.083 C21 BO2 21
BO2 C22 C22 C 0 1 N N N N N N 64.290 -135.000 42.077 4.637 -0.015 1.076 C22 BO2 22
BO2 C23 C23 C 0 1 N N N N N N 63.536 -133.650 41.792 5.936 0.770 0.885 C23 BO2 23
BO2 C24 C24 C 0 1 N N N N N N 62.339 -133.370 42.746 5.644 2.269 0.977 C24 BO2 24
BO2 C25 C25 C 0 1 N N N N N N 64.522 -132.460 41.943 6.935 0.378 1.976 C25 BO2 25
BO2 B26 B26 B 0 1 N N N N N N 63.207 -137.050 43.372 4.288 -0.288 -1.416 B26 BO2 26
BO2 O27 O27 O 0 1 N N N N N N 62.353 -136.240 44.024 3.430 -0.616 -2.499 O27 BO2 27
BO2 O28 O28 O 0 1 N N N N N N 62.626 -138.240 43.153 5.690 -0.477 -1.537 O28 BO2 28
BO2 H3 H3 H 0 1 N N N N N N 62.508 -132.220 35.891 -4.858 0.563 1.547 H3 BO2 29
BO2 H5 H5 H 0 1 N N N N N N 63.890 -133.530 32.093 -6.226 3.899 -0.525 H5 BO2 30
BO2 H6 H6 H 0 1 N N N N N N 63.352 -135.897 32.725 -4.032 4.126 -1.625 H6 BO2 31
BO2 HN9 HN9 H 0 1 N N N N N N 62.275 -136.756 36.904 -1.004 1.367 -0.707 HN9 BO2 32
BO2 H10 H10 H 0 1 N N N N N N 60.655 -135.443 39.096 -0.145 -0.593 1.279 H10 BO2 33
BO2 H111 1H11 H 0 0 N N N N N N 60.399 -137.855 39.907 -0.266 -1.239 -1.700 H111 BO2 34
BO2 H112 2H11 H 0 0 N N N N N N 61.129 -138.359 38.345 0.610 -2.208 -0.491 H112 BO2 35
BO2 H13 H13 H 0 1 N N N N N N 59.749 -138.554 36.399 -0.592 -3.494 1.178 H13 BO2 36
BO2 H14 H14 H 0 1 N N N N N N 57.538 -138.253 35.252 -2.682 -4.659 1.758 H14 BO2 37
BO2 H15 H15 H 0 1 N N N N N N 55.712 -136.933 36.351 -4.777 -4.082 0.599 H15 BO2 38
BO2 H16 H16 H 0 1 N N N N N N 56.100 -135.916 38.608 -4.782 -2.335 -1.137 H16 BO2 39
BO2 H17 H17 H 0 1 N N N N N N 58.314 -136.193 39.759 -2.692 -1.167 -1.714 H17 BO2 40
BO2 H20 H20 H 0 1 N N N N N N 61.456 -136.480 41.474 2.347 -1.259 0.498 H20 BO2 41
BO2 H21 H21 H 0 1 N N N N N N 64.301 -137.072 41.472 3.554 1.362 -0.177 H21 BO2 42
BO2 H221 1H22 H 0 0 N N N N N N 65.027 -135.040 41.261 4.858 -1.083 1.099 H221 BO2 43
BO2 H222 2H22 H 0 0 N N N N N N 64.631 -134.932 43.121 4.169 0.279 2.016 H222 BO2 44
BO2 H23 H23 H 0 1 N N N N N N 63.140 -133.750 40.771 6.359 0.541 -0.093 H23 BO2 45
BO2 H241 1H24 H 0 0 N N N N N N 61.608 -134.188 42.666 4.933 2.549 0.200 H241 BO2 46
BO2 H242 2H24 H 0 0 N N N N N N 61.860 -132.421 42.464 5.222 2.498 1.955 H242 BO2 47
BO2 H243 3H24 H 0 0 N N N N N N 62.703 -133.304 43.782 6.569 2.829 0.841 H243 BO2 48
BO2 H251 1H25 H 0 0 N N N N N N 64.061 -131.548 41.536 6.512 0.606 2.955 H251 BO2 49
BO2 H252 2H25 H 0 0 N N N N N N 65.449 -132.680 41.392 7.143 -0.690 1.911 H252 BO2 50
BO2 H253 3H25 H 0 0 N N N N N N 64.755 -132.309 43.007 7.860 0.937 1.840 H253 BO2 51
BO2 H27 H27 H 0 1 N N N N N N 62.695 -136.049 44.889 2.529 -0.414 -2.213 H27 BO2 52
BO2 H28 H28 H 0 1 N N N N N N 62.489 -138.359 42.221 5.848 -0.833 -2.423 H28 BO2 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BO2 N1 C2 SING Y N 1
BO2 N1 C6 DOUB Y N 2
BO2 C2 C3 DOUB Y N 3
BO2 C2 C7 SING N N 4
BO2 C3 N4 SING Y N 5
BO2 C3 H3 SING N N 6
BO2 N4 C5 DOUB Y N 7
BO2 C5 C6 SING Y N 8
BO2 C5 H5 SING N N 9
BO2 C6 H6 SING N N 10
BO2 C7 O8 DOUB N N 11
BO2 C7 N9 SING N N 12
BO2 N9 C10 SING N N 13
BO2 N9 HN9 SING N N 14
BO2 C10 C11 SING N N 15
BO2 C10 C18 SING N N 16
BO2 C10 H10 SING N N 17
BO2 C11 C12 SING N N 18
BO2 C11 H111 SING N N 19
BO2 C11 H112 SING N N 20
BO2 C12 C13 SING Y N 21
BO2 C12 C17 DOUB Y N 22
BO2 C13 C14 DOUB Y N 23
BO2 C13 H13 SING N N 24
BO2 C14 C15 SING Y N 25
BO2 C14 H14 SING N N 26
BO2 C15 C16 DOUB Y N 27
BO2 C15 H15 SING N N 28
BO2 C16 C17 SING Y N 29
BO2 C16 H16 SING N N 30
BO2 C17 H17 SING N N 31
BO2 C18 O19 DOUB N N 32
BO2 C18 N20 SING N N 33
BO2 N20 C21 SING N N 34
BO2 N20 H20 SING N N 35
BO2 C21 C22 SING N N 36
BO2 C21 B26 SING N N 37
BO2 C21 H21 SING N N 38
BO2 C22 C23 SING N N 39
BO2 C22 H221 SING N N 40
BO2 C22 H222 SING N N 41
BO2 C23 C24 SING N N 42
BO2 C23 C25 SING N N 43
BO2 C23 H23 SING N N 44
BO2 C24 H241 SING N N 45
BO2 C24 H242 SING N N 46
BO2 C24 H243 SING N N 47
BO2 C25 H251 SING N N 48
BO2 C25 H252 SING N N 49
BO2 C25 H253 SING N N 50
BO2 B26 O27 SING N N 51
BO2 B26 O28 SING N N 52
BO2 O27 H27 SING N N 53
BO2 O28 H28 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BO2 SMILES ACDLabs 10.04 O=C(NC(C(=O)NC(B(O)O)CC(C)C)Cc1ccccc1)c2nccnc2
BO2 SMILES_CANONICAL CACTVS 3.341 CC(C)C[C@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)c2cnccn2)B(O)O
BO2 SMILES CACTVS 3.341 CC(C)C[CH](NC(=O)[CH](Cc1ccccc1)NC(=O)c2cnccn2)B(O)O
BO2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 B([C@H](CC(C)C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c2cnccn2)(O)O
BO2 SMILES "OpenEye OEToolkits" 1.5.0 B(C(CC(C)C)NC(=O)C(Cc1ccccc1)NC(=O)c2cnccn2)(O)O
BO2 InChI InChI 1.03 InChI=1S/C19H25BN4O4/c1-13(2)10-17(20(27)28)24-18(25)15(11-14-6-4-3-5-7-14)23-19(26)16-12-21-8-9-22-16/h3-9,12-13,15,17,27-28H,10-11H2,1-2H3,(H,23,26)(H,24,25)/t15-,17-/m0/s1
BO2 InChIKey InChI 1.03 GXJABQQUPOEUTA-RDJZCZTQSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BO2 "SYSTEMATIC NAME" ACDLabs 10.04 N-[(1R)-1-(dihydroxyboranyl)-3-methylbutyl]-Nalpha-(pyrazin-2-ylcarbonyl)-L-phenylalaninamide
BO2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R)-3-methyl-1-[[(2S)-3-phenyl-2-(pyrazin-2-ylcarbonylamino)propanoyl]amino]butyl]boronic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BO2 'Create component' 2006-01-06 RCSB
BO2 'Modify descriptor' 2011-06-04 RCSB
BO2 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id BO2
_pdbx_chem_comp_synonyms.name BORTEZOMIB
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id BO2
_pdbe_chem_comp_drugbank_details.drugbank_id DB00188
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Bortezomib
_pdbe_chem_comp_drugbank_details.description
'Bortezomib is a dipeptide boronic acid derivative and proteasome inhibitor used to treat multiple myeloma and mantle cell lymphoma.[A204083] The 26S proteasome is a protein complex that degrades ubiquitinated proteins in the ubiquitin-proteasome pathway: reversible inhibition of the 26S proteasome, leading to cell cycle arrest and apoptosis of cancer cells, is thought to be the main mechanism of action of bortezomib.[L14180] However, multiple mechanisms may be involved in the anticancer activity of bortezomib.[A204083]  Bortezomib was first synthesized in 1995.[A204083] In May 2003, bortezomib became the first anticancer proteasome inhibitor that was approved by the FDA under the trade name VELCADE.[A204146] Phase I, II, III, and IV clinical trials are undergoing to investigate the therapeutic efficacy of bortezomib in leukemia, myasthenia gravis, systemic lupus erythematosus, rheumatoid arthritis, and solid tumours.[A214307]'
_pdbe_chem_comp_drugbank_details.cas_number 179324-69-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'The ubiquitin-proteasome pathway is a homeostatic proteolytic pathway for intracellular protein degradation: proteins marked with a poly-ubiquitin chain are degraded to small peptides and free ubiquitin by the proteasome, which is a large multimeric protease.[A18508] Aberrant proteasome-dependent proteolysis, as seen in some malignancies, can lead to uncontrolled cell division, leading to tumorigenesis, cancer growth, and spread.[A18508, A204083]   Bortezomib is a reversible inhibitor of the 26S proteasome, which is made up of a 20S core complexed with a 19S regulatory complex. Individual β-subunits allow specific catalytic action of the 20S core.[A18509, A204083] In mammalian cells, bortezomib is a potent inhibitor of the proteasome’s chymotryptic-like activity, which is attributed to the β5-subunit of the 20S core particle.[A18509] Bortezomib binds to the active site of the threonine hydroxyl group in the β5-subunit.[A204083] A probing study showed bortezomib also binding to and inhibiting the β1-subunit, which mediates the caspase-like activity of the proteasome, and β1i-subunit, which is an altered subunit that is expressed to form immunoproteasomes in response to cell stress or inflammation.[A18509] By inhibiting the proteasome-mediated degradation of key proteins that promote cell apoptosis,[A18508] bortezomib induces a cell cycle arrest during the G2-M phase.[L14180] It is believed that multiple mechanisms, other than proteasome inhibition, may be involved in the anticancer activity of bortezomib.[A204083] The anticancer activity of bortezomib was largely associated with suppression of the NF-κB signalling pathway, resulting in the downregulation of anti-apoptotic target genes and expression of anti-apoptic proteins. This may be explained by bortezomib preventing uncontrolled degradation of IκB, which is an inhibitory protein of NF-κB. NOXA, which is a pro-apoptotic factor, induced by bortezomib selectively in cancer cells; thus, it is suggested to be another key mechanism of bortezomib.[A204083]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
BO2 Velcade ChEMBL Tradename
BO2 BORTEZOMIB wwPDB ?
BO2 '[(1R)-3-methyl-1-({(2S)-3-phenyl-2-[(pyrazin-2-ylcarbonyl)amino]propanoyl}amino)butyl]boronic acid' DrugBank ?
BO2 Bortezomib DrugBank ?
BO2 'N-[(1R)-1-(DIHYDROXYBORYL)-3-methylbutyl]-N-(pyrazin-2-ylcarbonyl)-L-phenylalaninamide' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BO2
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00188
_pdbe_chem_comp_drugbank_classification.parent 'Phenylalanine and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylalanine and derivatives. These are compounds containing phenylalanine or a derivative thereof resulting from reaction of phenylalanine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
BO2 DB00188 'Proteasome subunit beta type-5' Humans P28074 yes 1
BO2 DB00188 'Proteasome subunit beta type-1' Humans P20618 yes 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BO2 N1 N 14.691 -0.840 1
BO2 C2 C 13.392 -0.090 2
BO2 C3 C 13.392 1.410 3
BO2 N4 N 14.691 2.160 4
BO2 C5 C 15.990 1.410 5
BO2 C6 C 15.990 -0.090 6
BO2 C7 C 12.093 -0.840 7
BO2 O8 O 12.093 -2.340 8
BO2 N9 N 10.794 -0.090 9
BO2 C10 C 9.495 -0.840 10
BO2 C11 C 9.495 -2.340 11
BO2 C12 C 8.196 -3.090 12
BO2 C13 C 6.897 -2.340 13
BO2 C14 C 5.598 -3.090 14
BO2 C15 C 5.598 -4.590 15
BO2 C16 C 6.897 -5.340 16
BO2 C17 C 8.196 -4.590 17
BO2 C18 C 8.196 -0.090 18
BO2 O19 O 6.897 -0.840 19
BO2 N20 N 8.196 1.410 20
BO2 C21 C 6.897 2.160 21
BO2 C22 C 5.598 1.410 22
BO2 C23 C 4.299 2.160 23
BO2 C24 C 3.000 1.410 24
BO2 C25 C 4.299 3.660 25
BO2 B26 B 6.897 3.660 26
BO2 O27 O 5.598 4.410 27
BO2 O28 O 8.196 4.410 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BO2 N1 C2 DOUBLE NONE 1
BO2 N1 C6 SINGLE NONE 2
BO2 C2 C3 SINGLE NONE 3
BO2 C2 C7 SINGLE NONE 4
BO2 C3 N4 DOUBLE NONE 5
BO2 N4 C5 SINGLE NONE 6
BO2 C5 C6 DOUBLE NONE 7
BO2 C7 O8 DOUBLE NONE 8
BO2 C7 N9 SINGLE NONE 9
BO2 N9 C10 SINGLE NONE 10
BO2 C10 C11 SINGLE BEGINWEDGE 11
BO2 C10 C18 SINGLE NONE 12
BO2 C11 C12 SINGLE NONE 13
BO2 C12 C13 DOUBLE NONE 14
BO2 C12 C17 SINGLE NONE 15
BO2 C13 C14 SINGLE NONE 16
BO2 C14 C15 DOUBLE NONE 17
BO2 C15 C16 SINGLE NONE 18
BO2 C16 C17 DOUBLE NONE 19
BO2 C18 O19 DOUBLE NONE 20
BO2 C18 N20 SINGLE NONE 21
BO2 N20 C21 SINGLE NONE 22
BO2 C21 C22 SINGLE BEGINWEDGE 23
BO2 C21 B26 SINGLE NONE 24
BO2 C22 C23 SINGLE NONE 25
BO2 C23 C24 SINGLE NONE 26
BO2 C23 C25 SINGLE NONE 27
BO2 B26 O27 SINGLE NONE 28
BO2 B26 O28 SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BO2 MurckoScaffold S1 scaffold O=C(NCCc1ccccc1)c1cnccn1 InChI=1S/C13H13N3O/c17-13(12-10-14-8-9-15-12)16-7-6-11-4-2-1-3-5-11/h1-5,8-10H,6-7H2,(H,16,17) LTUIOLVGQSZARV-UHFFFAOYSA-N
BO2 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
BO2 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
BO2 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
BO2 pyrazine F4 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BO2 N1 S1 1
BO2 C2 S1 1
BO2 C3 S1 1
BO2 N4 S1 1
BO2 C5 S1 1
BO2 C6 S1 1
BO2 C7 S1 1
BO2 O8 S1 1
BO2 N9 S1 1
BO2 C10 S1 1
BO2 C11 S1 1
BO2 C12 S1 1
BO2 C13 S1 1
BO2 C14 S1 1
BO2 C15 S1 1
BO2 C16 S1 1
BO2 C17 S1 1
BO2 N9 F1 1
BO2 C7 F1 1
BO2 O8 F1 1
BO2 C2 F1 1
BO2 N20 F1 2
BO2 C18 F1 2
BO2 O19 F1 2
BO2 C10 F1 2
BO2 O19 F2 1
BO2 C18 F2 1
BO2 C10 F2 1
BO2 N9 F2 1
BO2 C12 F3 1
BO2 C13 F3 1
BO2 C14 F3 1
BO2 C15 F3 1
BO2 C16 F3 1
BO2 C17 F3 1
BO2 C2 F4 1
BO2 C3 F4 1
BO2 N4 F4 1
BO2 C5 F4 1
BO2 C6 F4 1
BO2 N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id BO2
_pdbe_chem_comp_rdkit_properties.exactmw 384.197
_pdbe_chem_comp_rdkit_properties.amw 384.245
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 53
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.368
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 199.530
_pdbe_chem_comp_rdkit_properties.tpsa 124.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.251
_pdbe_chem_comp_rdkit_properties.CrippenMR 104.478
_pdbe_chem_comp_rdkit_properties.chi0v 13.499
_pdbe_chem_comp_rdkit_properties.chi1v 6.957
_pdbe_chem_comp_rdkit_properties.chi2v 2.496
_pdbe_chem_comp_rdkit_properties.chi3v 2.496
_pdbe_chem_comp_rdkit_properties.chi4v 1.452
_pdbe_chem_comp_rdkit_properties.chi0n 38.499
_pdbe_chem_comp_rdkit_properties.chi1n 19.168
_pdbe_chem_comp_rdkit_properties.chi2n 2.496
_pdbe_chem_comp_rdkit_properties.chi3n 2.496
_pdbe_chem_comp_rdkit_properties.chi4n 1.452
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.775
_pdbe_chem_comp_rdkit_properties.kappa1 5.641
_pdbe_chem_comp_rdkit_properties.kappa2 10.531
_pdbe_chem_comp_rdkit_properties.kappa3 6.750
_pdbe_chem_comp_rdkit_properties.Phi 2.122
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BO2 UniChem ChEMBL CHEMBL325041
BO2 UniChem DrugBank DB00188
BO2 UniChem PDBe BO2
BO2 UniChem 'Guide to Pharmacology' 6391
BO2 UniChem 'PubChem DOTF' 12015194
BO2 UniChem ChEBI 52717
BO2 UniChem ZINC ZINC000169746649
BO2 UniChem eMolecules 29934400
BO2 UniChem fdasrs 69G8BD63PP
BO2 UniChem SureChEMBL SCHEMBL192129
BO2 UniChem HMDB HMDB0014334
BO2 UniChem Selleck Bortezomib
BO2 UniChem 'PubChem TPHARMA' 14853748
BO2 UniChem LINCS LSM-6281
BO2 UniChem ACTor 179324-69-7
BO2 UniChem Nikkaji J1.921.292K
BO2 UniChem BindingDb 50069989
BO2 UniChem DrugCentral 391
BO2 UniChem BRENDA 16402
BO2 UniChem BRENDA 42093
BO2 UniChem BRENDA 4725
BO2 UniChem DailyMed BORTEZOMIB
BO2 UniChem ClinicalTrials BORTEZOMIB
BO2 UniChem ClinicalTrials LDP-341
BO2 UniChem ClinicalTrials NSC-681239
BO2 UniChem ClinicalTrials PS-341
BO2 UniChem ClinicalTrials VELCADE
BO2 UniChem rxnorm BORTEZOMIB
BO2 UniChem rxnorm VELCADE
BO2 UniChem MedChemExpress HY-10227
BO2 UniChem 'Probes And Drugs' PD003632
BO2 UniChem 'EPA CompTox Dashboard' DTXSID3040980
BO2 UniChem PubChem 387447
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BO2 N1 2.443 -4.081 -1.395 ETKDGv3 1
BO2 C2 3.203 -3.220 -0.778 ETKDGv3 2
BO2 C3 4.373 -3.721 -0.015 ETKDGv3 3
BO2 N4 4.615 -4.999 0.022 ETKDGv3 4
BO2 C5 3.771 -5.937 -0.664 ETKDGv3 5
BO2 C6 2.715 -5.491 -1.353 ETKDGv3 6
BO2 C7 2.894 -1.777 -0.836 ETKDGv3 7
BO2 O8 3.631 -0.959 -0.220 ETKDGv3 8
BO2 N9 1.762 -1.298 -1.581 ETKDGv3 9
BO2 C10 1.363 0.113 -1.566 ETKDGv3 10
BO2 C11 0.294 0.383 -2.644 ETKDGv3 11
BO2 C12 -0.122 1.832 -2.673 ETKDGv3 12
BO2 C13 0.624 2.750 -3.314 ETKDGv3 13
BO2 C14 0.233 4.175 -3.292 ETKDGv3 14
BO2 C15 -0.859 4.561 -2.621 ETKDGv3 15
BO2 C16 -1.677 3.562 -1.904 ETKDGv3 16
BO2 C17 -1.331 2.270 -1.928 ETKDGv3 17
BO2 C18 0.848 0.479 -0.198 ETKDGv3 18
BO2 O19 1.367 1.448 0.419 ETKDGv3 19
BO2 N20 -0.241 -0.254 0.384 ETKDGv3 20
BO2 C21 -0.867 0.131 1.651 ETKDGv3 21
BO2 C22 -2.399 -0.108 1.573 ETKDGv3 22
BO2 C23 -3.275 0.907 2.351 ETKDGv3 23
BO2 C24 -2.908 1.001 3.836 ETKDGv3 24
BO2 C25 -3.277 2.297 1.695 ETKDGv3 25
BO2 B26 -0.178 -0.712 2.830 ETKDGv3 26
BO2 O27 0.630 -0.033 3.841 ETKDGv3 27
BO2 O28 -0.264 -2.171 2.833 ETKDGv3 28
BO2 H3 5.027 -3.039 0.512 ETKDGv3 29
BO2 H5 3.991 -6.996 -0.621 ETKDGv3 30
BO2 H6 2.068 -6.183 -1.875 ETKDGv3 31
BO2 HN9 1.194 -1.980 -2.133 ETKDGv3 32
BO2 H10 2.256 0.735 -1.806 ETKDGv3 33
BO2 H111 -0.597 -0.258 -2.466 ETKDGv3 34
BO2 H112 0.700 0.096 -3.640 ETKDGv3 35
BO2 H13 1.522 2.458 -3.845 ETKDGv3 36
BO2 H14 0.835 4.906 -3.816 ETKDGv3 37
BO2 H15 -1.145 5.605 -2.602 ETKDGv3 38
BO2 H16 -2.556 3.879 -1.357 ETKDGv3 39
BO2 H17 -1.933 1.544 -1.397 ETKDGv3 40
BO2 H20 -0.550 -1.140 -0.078 ETKDGv3 41
BO2 H21 -0.667 1.204 1.844 ETKDGv3 42
BO2 H221 -2.650 -1.137 1.915 ETKDGv3 43
BO2 H222 -2.720 -0.071 0.509 ETKDGv3 44
BO2 H23 -4.320 0.528 2.299 ETKDGv3 45
BO2 H241 -2.860 -0.013 4.287 ETKDGv3 46
BO2 H242 -3.681 1.585 4.380 ETKDGv3 47
BO2 H243 -1.931 1.510 3.972 ETKDGv3 48
BO2 H251 -4.021 2.950 2.199 ETKDGv3 49
BO2 H252 -3.562 2.217 0.625 ETKDGv3 50
BO2 H253 -2.283 2.785 1.766 ETKDGv3 51
BO2 H27 0.006 0.137 4.590 ETKDGv3 52
BO2 H28 0.509 -2.469 2.290 ETKDGv3 53
#